data_8NSE # _model_server_result.job_id KPzSiNo3-0gnBOIMSTb3bQ _model_server_result.datetime_utc '2024-11-23 02:46:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8nse # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":601}' # _entry.id 8NSE # _exptl.entry_id 8NSE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8NSE _cell.length_a 58.31 _cell.length_b 105.78 _cell.length_c 156.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8NSE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 58 A CYS 96 1_555 C ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc2 A SG CYS 63 A CYS 101 1_555 C ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc3 A SG CYS 148 A CYS 186 1_555 D FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc4 A SG CYS 346 A CYS 384 1_555 G AS CAD . A CAD 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc5 C ZN ZN . A ZN 900 1_555 B SG CYS 58 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc6 C ZN ZN . A ZN 900 1_555 B SG CYS 63 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc7 B SG CYS 148 B CYS 186 1_555 I FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc8 B SG CYS 346 B CYS 384 1_555 L AS CAD . B CAD 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 153 n y N1 C8A H4B sing 154 n y C2 N2 H4B sing 155 n n C2 N3 H4B sing 156 n y N2 HN21 H4B sing 157 n n N2 HN22 H4B sing 158 n n N3 C4 H4B sing 159 n y N3 HN3 H4B sing 160 n n C4 O4 H4B doub 161 n n C4 C4A H4B sing 162 n y C4A C8A H4B doub 163 n y C4A N5 H4B sing 164 n n C8A N8 H4B sing 165 n n N5 C6 H4B sing 166 n n N5 HN5 H4B sing 167 n n N8 C7 H4B sing 168 n n N8 HN8 H4B sing 169 n n C6 C7 H4B sing 170 n n C6 C9 H4B sing 171 n n C6 H6 H4B sing 172 n n C7 H71 H4B sing 173 n n C7 H72 H4B sing 174 n n C9 O9 H4B sing 175 n n C9 C10 H4B sing 176 n n C9 H9 H4B sing 177 n n O9 HO9 H4B sing 178 n n C10 C11 H4B sing 179 n n C10 O10 H4B sing 180 n n C10 H10 H4B sing 181 n n C11 H111 H4B sing 182 n n C11 H112 H4B sing 183 n n C11 H113 H4B sing 184 n n O10 HO0 H4B sing 185 n n # _atom_sites.entry_id 8NSE _atom_sites.fract_transf_matrix[1][1] 0.01715 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 900 900 ZN ZN . D 3 HEM A 1 500 500 HEM HEM . E 4 H4B A 1 600 600 H4B H4B . F 5 NRG A 1 705 705 NRG NRG . G 6 CAD A 1 950 950 CAD CAC . H 7 GOL A 1 880 -99999 GOL GOL . I 3 HEM B 1 500 500 HEM HEM . J 4 H4B B 1 601 600 H4B H4B . K 5 NRG B 1 706 705 NRG NRG . L 6 CAD B 1 950 950 CAD CAC . M 7 GOL B 1 881 880 GOL GOL . N 8 HOH A 1 951 1 HOH HOH . N 8 HOH A 2 952 3 HOH HOH . N 8 HOH A 3 953 4 HOH HOH . N 8 HOH A 4 954 6 HOH HOH . N 8 HOH A 5 955 7 HOH HOH . N 8 HOH A 6 956 11 HOH HOH . N 8 HOH A 7 957 13 HOH HOH . N 8 HOH A 8 958 15 HOH HOH . N 8 HOH A 9 959 20 HOH HOH . N 8 HOH A 10 960 22 HOH HOH . N 8 HOH A 11 961 24 HOH HOH . N 8 HOH A 12 962 25 HOH HOH . N 8 HOH A 13 963 26 HOH HOH . N 8 HOH A 14 964 32 HOH HOH . N 8 HOH A 15 965 33 HOH HOH . N 8 HOH A 16 966 35 HOH HOH . N 8 HOH A 17 967 40 HOH HOH . N 8 HOH A 18 968 41 HOH HOH . N 8 HOH A 19 969 44 HOH HOH . N 8 HOH A 20 970 46 HOH HOH . N 8 HOH A 21 971 47 HOH HOH . N 8 HOH A 22 972 48 HOH HOH . N 8 HOH A 23 973 50 HOH HOH . N 8 HOH A 24 974 52 HOH HOH . N 8 HOH A 25 975 53 HOH HOH . N 8 HOH A 26 976 55 HOH HOH . N 8 HOH A 27 977 57 HOH HOH . N 8 HOH A 28 978 58 HOH HOH . N 8 HOH A 29 979 60 HOH HOH . N 8 HOH A 30 980 65 HOH HOH . N 8 HOH A 31 981 66 HOH HOH . N 8 HOH A 32 982 67 HOH HOH . N 8 HOH A 33 983 68 HOH HOH . N 8 HOH A 34 984 69 HOH HOH . N 8 HOH A 35 985 70 HOH HOH . N 8 HOH A 36 986 71 HOH HOH . N 8 HOH A 37 987 73 HOH HOH . N 8 HOH A 38 988 74 HOH HOH . N 8 HOH A 39 989 75 HOH HOH . N 8 HOH A 40 990 76 HOH HOH . N 8 HOH A 41 991 77 HOH HOH . N 8 HOH A 42 992 79 HOH HOH . N 8 HOH A 43 993 80 HOH HOH . N 8 HOH A 44 994 84 HOH HOH . N 8 HOH A 45 995 86 HOH HOH . N 8 HOH A 46 996 87 HOH HOH . N 8 HOH A 47 997 88 HOH HOH . N 8 HOH A 48 998 90 HOH HOH . N 8 HOH A 49 999 91 HOH HOH . N 8 HOH A 50 1000 92 HOH HOH . N 8 HOH A 51 1001 94 HOH HOH . N 8 HOH A 52 1002 95 HOH HOH . N 8 HOH A 53 1003 96 HOH HOH . N 8 HOH A 54 1004 97 HOH HOH . N 8 HOH A 55 1005 101 HOH HOH . N 8 HOH A 56 1006 105 HOH HOH . N 8 HOH A 57 1007 106 HOH HOH . N 8 HOH A 58 1008 108 HOH HOH . N 8 HOH A 59 1009 109 HOH HOH . N 8 HOH A 60 1010 110 HOH HOH . N 8 HOH A 61 1011 111 HOH HOH . N 8 HOH A 62 1012 112 HOH HOH . N 8 HOH A 63 1013 116 HOH HOH . N 8 HOH A 64 1014 117 HOH HOH . N 8 HOH A 65 1015 121 HOH HOH . N 8 HOH A 66 1016 125 HOH HOH . N 8 HOH A 67 1017 129 HOH HOH . N 8 HOH A 68 1018 131 HOH HOH . N 8 HOH A 69 1019 132 HOH HOH . N 8 HOH A 70 1020 133 HOH HOH . N 8 HOH A 71 1021 138 HOH HOH . N 8 HOH A 72 1022 140 HOH HOH . N 8 HOH A 73 1023 142 HOH HOH . N 8 HOH A 74 1024 149 HOH HOH . N 8 HOH A 75 1025 150 HOH HOH . N 8 HOH A 76 1026 153 HOH HOH . N 8 HOH A 77 1027 154 HOH HOH . N 8 HOH A 78 1028 156 HOH HOH . N 8 HOH A 79 1029 157 HOH HOH . N 8 HOH A 80 1030 158 HOH HOH . N 8 HOH A 81 1031 159 HOH HOH . N 8 HOH A 82 1032 163 HOH HOH . N 8 HOH A 83 1033 164 HOH HOH . N 8 HOH A 84 1034 165 HOH HOH . N 8 HOH A 85 1035 166 HOH HOH . N 8 HOH A 86 1036 167 HOH HOH . N 8 HOH A 87 1037 168 HOH HOH . N 8 HOH A 88 1038 169 HOH HOH . N 8 HOH A 89 1039 170 HOH HOH . N 8 HOH A 90 1040 171 HOH HOH . N 8 HOH A 91 1041 172 HOH HOH . N 8 HOH A 92 1042 173 HOH HOH . N 8 HOH A 93 1043 174 HOH HOH . N 8 HOH A 94 1044 191 HOH HOH . N 8 HOH A 95 1045 192 HOH HOH . N 8 HOH A 96 1046 193 HOH HOH . N 8 HOH A 97 1047 194 HOH HOH . O 8 HOH B 1 951 2 HOH HOH . O 8 HOH B 2 952 5 HOH HOH . O 8 HOH B 3 953 8 HOH HOH . O 8 HOH B 4 954 9 HOH HOH . O 8 HOH B 5 955 10 HOH HOH . O 8 HOH B 6 956 12 HOH HOH . O 8 HOH B 7 957 14 HOH HOH . O 8 HOH B 8 958 16 HOH HOH . O 8 HOH B 9 959 17 HOH HOH . O 8 HOH B 10 960 18 HOH HOH . O 8 HOH B 11 961 19 HOH HOH . O 8 HOH B 12 962 21 HOH HOH . O 8 HOH B 13 963 23 HOH HOH . O 8 HOH B 14 964 27 HOH HOH . O 8 HOH B 15 965 28 HOH HOH . O 8 HOH B 16 966 29 HOH HOH . O 8 HOH B 17 967 30 HOH HOH . O 8 HOH B 18 968 31 HOH HOH . O 8 HOH B 19 969 34 HOH HOH . O 8 HOH B 20 970 36 HOH HOH . O 8 HOH B 21 971 37 HOH HOH . O 8 HOH B 22 972 38 HOH HOH . O 8 HOH B 23 973 39 HOH HOH . O 8 HOH B 24 974 42 HOH HOH . O 8 HOH B 25 975 43 HOH HOH . O 8 HOH B 26 976 45 HOH HOH . O 8 HOH B 27 977 49 HOH HOH . O 8 HOH B 28 978 51 HOH HOH . O 8 HOH B 29 979 54 HOH HOH . O 8 HOH B 30 980 56 HOH HOH . O 8 HOH B 31 981 59 HOH HOH . O 8 HOH B 32 982 61 HOH HOH . O 8 HOH B 33 983 62 HOH HOH . O 8 HOH B 34 984 63 HOH HOH . O 8 HOH B 35 985 64 HOH HOH . O 8 HOH B 36 986 72 HOH HOH . O 8 HOH B 37 987 78 HOH HOH . O 8 HOH B 38 988 81 HOH HOH . O 8 HOH B 39 989 82 HOH HOH . O 8 HOH B 40 990 83 HOH HOH . O 8 HOH B 41 991 85 HOH HOH . O 8 HOH B 42 992 89 HOH HOH . O 8 HOH B 43 993 93 HOH HOH . O 8 HOH B 44 994 98 HOH HOH . O 8 HOH B 45 995 99 HOH HOH . O 8 HOH B 46 996 100 HOH HOH . O 8 HOH B 47 997 102 HOH HOH . O 8 HOH B 48 998 103 HOH HOH . O 8 HOH B 49 999 104 HOH HOH . O 8 HOH B 50 1000 107 HOH HOH . O 8 HOH B 51 1001 113 HOH HOH . O 8 HOH B 52 1002 114 HOH HOH . O 8 HOH B 53 1003 115 HOH HOH . O 8 HOH B 54 1004 118 HOH HOH . O 8 HOH B 55 1005 119 HOH HOH . O 8 HOH B 56 1006 120 HOH HOH . O 8 HOH B 57 1007 122 HOH HOH . O 8 HOH B 58 1008 123 HOH HOH . O 8 HOH B 59 1009 124 HOH HOH . O 8 HOH B 60 1010 126 HOH HOH . O 8 HOH B 61 1011 127 HOH HOH . O 8 HOH B 62 1012 128 HOH HOH . O 8 HOH B 63 1013 130 HOH HOH . O 8 HOH B 64 1014 134 HOH HOH . O 8 HOH B 65 1015 135 HOH HOH . O 8 HOH B 66 1016 136 HOH HOH . O 8 HOH B 67 1017 137 HOH HOH . O 8 HOH B 68 1018 139 HOH HOH . O 8 HOH B 69 1019 141 HOH HOH . O 8 HOH B 70 1020 143 HOH HOH . O 8 HOH B 71 1021 144 HOH HOH . O 8 HOH B 72 1022 145 HOH HOH . O 8 HOH B 73 1023 146 HOH HOH . O 8 HOH B 74 1024 147 HOH HOH . O 8 HOH B 75 1025 148 HOH HOH . O 8 HOH B 76 1026 151 HOH HOH . O 8 HOH B 77 1027 152 HOH HOH . O 8 HOH B 78 1028 155 HOH HOH . O 8 HOH B 79 1029 160 HOH HOH . O 8 HOH B 80 1030 161 HOH HOH . O 8 HOH B 81 1031 162 HOH HOH . O 8 HOH B 82 1032 175 HOH HOH . O 8 HOH B 83 1033 176 HOH HOH . O 8 HOH B 84 1034 177 HOH HOH . O 8 HOH B 85 1035 178 HOH HOH . O 8 HOH B 86 1036 179 HOH HOH . O 8 HOH B 87 1037 180 HOH HOH . O 8 HOH B 88 1038 181 HOH HOH . O 8 HOH B 89 1039 182 HOH HOH . O 8 HOH B 90 1040 183 HOH HOH . O 8 HOH B 91 1041 184 HOH HOH . O 8 HOH B 92 1042 185 HOH HOH . O 8 HOH B 93 1043 186 HOH HOH . O 8 HOH B 94 1044 187 HOH HOH . O 8 HOH B 95 1045 188 HOH HOH . O 8 HOH B 96 1046 189 HOH HOH . O 8 HOH B 97 1047 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . J 4 2.795 6.622 56.309 1 27.29 ? N1 H4B 601 B 1 HETATM 2 C C2 H4B . . . J 4 2.289 6.713 57.56 1 29.07 ? C2 H4B 601 B 1 HETATM 3 N N2 H4B . . . J 4 2.421 7.799 58.322 1 24.03 ? N2 H4B 601 B 1 HETATM 4 N N3 H4B . . . J 4 1.614 5.634 58.044 1 31.14 ? N3 H4B 601 B 1 HETATM 5 C C4 H4B . . . J 4 1.411 4.427 57.338 1 29.73 ? C4 H4B 601 B 1 HETATM 6 O O4 H4B . . . J 4 0.79 3.511 57.868 1 33.69 ? O4 H4B 601 B 1 HETATM 7 C C4A H4B . . . J 4 1.975 4.416 56.061 1 31.59 ? C4A H4B 601 B 1 HETATM 8 C C8A H4B . . . J 4 2.65 5.482 55.533 1 29.09 ? C8A H4B 601 B 1 HETATM 9 N N5 H4B . . . J 4 1.807 3.185 55.285 1 31.93 ? N5 H4B 601 B 1 HETATM 10 N N8 H4B . . . J 4 3.178 5.453 54.31 1 29.51 ? N8 H4B 601 B 1 HETATM 11 C C6 H4B . . . J 4 2.884 2.976 54.237 1 28.65 ? C6 H4B 601 B 1 HETATM 12 C C7 H4B . . . J 4 3.052 4.268 53.457 1 29.58 ? C7 H4B 601 B 1 HETATM 13 C C9 H4B . . . J 4 2.412 1.784 53.408 1 32.5 ? C9 H4B 601 B 1 HETATM 14 O O9 H4B . . . J 4 1.127 1.965 52.85 1 35.32 ? O9 H4B 601 B 1 HETATM 15 C C10 H4B . . . J 4 3.376 1.419 52.267 1 33.13 ? C10 H4B 601 B 1 HETATM 16 C C11 H4B . . . J 4 2.99 0.128 51.637 1 32.02 ? C11 H4B 601 B 1 HETATM 17 O O10 H4B . . . J 4 4.643 1.293 52.901 1 33.57 ? O10 H4B 601 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 17 #