data_8NSE
#
_model_server_result.job_id            vnXSkhvKBaQXr0P-W_Bgig 
_model_server_result.datetime_utc      '2024-11-23 02:51:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8nse 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":881}' 
#
_entry.id    8NSE 
#
_exptl.entry_id    8NSE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8NSE 
_cell.length_a            58.31 
_cell.length_b            105.78 
_cell.length_c            156.61 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8NSE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 H N N 
? 7 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 58 A CYS 96 1_555 C ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc2 A SG CYS 63 A CYS 101 1_555 C ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc3 A SG CYS 148 A CYS 186 1_555 D FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc4 A SG CYS 346 A CYS 384 1_555 G AS CAD . A CAD 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc5 C ZN ZN . A ZN 900 1_555 B SG CYS 58 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc6 C ZN ZN . A ZN 900 1_555 B SG CYS 63 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc7 B SG CYS 148 B CYS 186 1_555 I FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc8 B SG CYS 346 B CYS 384 1_555 L AS CAD . B CAD 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 140 n n 
C1 C2 GOL sing 141 n n 
C1 H11 GOL sing 142 n n 
C1 H12 GOL sing 143 n n 
O1 HO1 GOL sing 144 n n 
C2 O2 GOL sing 145 n n 
C2 C3 GOL sing 146 n n 
C2 H2 GOL sing 147 n n 
O2 HO2 GOL sing 148 n n 
C3 O3 GOL sing 149 n n 
C3 H31 GOL sing 150 n n 
C3 H32 GOL sing 151 n n 
O3 HO3 GOL sing 152 n n 
#
_atom_sites.entry_id                     8NSE 
_atom_sites.fract_transf_matrix[1][1]    0.01715 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009453 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006385 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 900 900 ZN ZN . 
D 3 HEM A 1 500 500 HEM HEM . 
E 4 H4B A 1 600 600 H4B H4B . 
F 5 NRG A 1 705 705 NRG NRG . 
G 6 CAD A 1 950 950 CAD CAC . 
H 7 GOL A 1 880 -99999 GOL GOL . 
I 3 HEM B 1 500 500 HEM HEM . 
J 4 H4B B 1 601 600 H4B H4B . 
K 5 NRG B 1 706 705 NRG NRG . 
L 6 CAD B 1 950 950 CAD CAC . 
M 7 GOL B 1 881 880 GOL GOL . 
N 8 HOH A 1 951 1 HOH HOH . 
N 8 HOH A 2 952 3 HOH HOH . 
N 8 HOH A 3 953 4 HOH HOH . 
N 8 HOH A 4 954 6 HOH HOH . 
N 8 HOH A 5 955 7 HOH HOH . 
N 8 HOH A 6 956 11 HOH HOH . 
N 8 HOH A 7 957 13 HOH HOH . 
N 8 HOH A 8 958 15 HOH HOH . 
N 8 HOH A 9 959 20 HOH HOH . 
N 8 HOH A 10 960 22 HOH HOH . 
N 8 HOH A 11 961 24 HOH HOH . 
N 8 HOH A 12 962 25 HOH HOH . 
N 8 HOH A 13 963 26 HOH HOH . 
N 8 HOH A 14 964 32 HOH HOH . 
N 8 HOH A 15 965 33 HOH HOH . 
N 8 HOH A 16 966 35 HOH HOH . 
N 8 HOH A 17 967 40 HOH HOH . 
N 8 HOH A 18 968 41 HOH HOH . 
N 8 HOH A 19 969 44 HOH HOH . 
N 8 HOH A 20 970 46 HOH HOH . 
N 8 HOH A 21 971 47 HOH HOH . 
N 8 HOH A 22 972 48 HOH HOH . 
N 8 HOH A 23 973 50 HOH HOH . 
N 8 HOH A 24 974 52 HOH HOH . 
N 8 HOH A 25 975 53 HOH HOH . 
N 8 HOH A 26 976 55 HOH HOH . 
N 8 HOH A 27 977 57 HOH HOH . 
N 8 HOH A 28 978 58 HOH HOH . 
N 8 HOH A 29 979 60 HOH HOH . 
N 8 HOH A 30 980 65 HOH HOH . 
N 8 HOH A 31 981 66 HOH HOH . 
N 8 HOH A 32 982 67 HOH HOH . 
N 8 HOH A 33 983 68 HOH HOH . 
N 8 HOH A 34 984 69 HOH HOH . 
N 8 HOH A 35 985 70 HOH HOH . 
N 8 HOH A 36 986 71 HOH HOH . 
N 8 HOH A 37 987 73 HOH HOH . 
N 8 HOH A 38 988 74 HOH HOH . 
N 8 HOH A 39 989 75 HOH HOH . 
N 8 HOH A 40 990 76 HOH HOH . 
N 8 HOH A 41 991 77 HOH HOH . 
N 8 HOH A 42 992 79 HOH HOH . 
N 8 HOH A 43 993 80 HOH HOH . 
N 8 HOH A 44 994 84 HOH HOH . 
N 8 HOH A 45 995 86 HOH HOH . 
N 8 HOH A 46 996 87 HOH HOH . 
N 8 HOH A 47 997 88 HOH HOH . 
N 8 HOH A 48 998 90 HOH HOH . 
N 8 HOH A 49 999 91 HOH HOH . 
N 8 HOH A 50 1000 92 HOH HOH . 
N 8 HOH A 51 1001 94 HOH HOH . 
N 8 HOH A 52 1002 95 HOH HOH . 
N 8 HOH A 53 1003 96 HOH HOH . 
N 8 HOH A 54 1004 97 HOH HOH . 
N 8 HOH A 55 1005 101 HOH HOH . 
N 8 HOH A 56 1006 105 HOH HOH . 
N 8 HOH A 57 1007 106 HOH HOH . 
N 8 HOH A 58 1008 108 HOH HOH . 
N 8 HOH A 59 1009 109 HOH HOH . 
N 8 HOH A 60 1010 110 HOH HOH . 
N 8 HOH A 61 1011 111 HOH HOH . 
N 8 HOH A 62 1012 112 HOH HOH . 
N 8 HOH A 63 1013 116 HOH HOH . 
N 8 HOH A 64 1014 117 HOH HOH . 
N 8 HOH A 65 1015 121 HOH HOH . 
N 8 HOH A 66 1016 125 HOH HOH . 
N 8 HOH A 67 1017 129 HOH HOH . 
N 8 HOH A 68 1018 131 HOH HOH . 
N 8 HOH A 69 1019 132 HOH HOH . 
N 8 HOH A 70 1020 133 HOH HOH . 
N 8 HOH A 71 1021 138 HOH HOH . 
N 8 HOH A 72 1022 140 HOH HOH . 
N 8 HOH A 73 1023 142 HOH HOH . 
N 8 HOH A 74 1024 149 HOH HOH . 
N 8 HOH A 75 1025 150 HOH HOH . 
N 8 HOH A 76 1026 153 HOH HOH . 
N 8 HOH A 77 1027 154 HOH HOH . 
N 8 HOH A 78 1028 156 HOH HOH . 
N 8 HOH A 79 1029 157 HOH HOH . 
N 8 HOH A 80 1030 158 HOH HOH . 
N 8 HOH A 81 1031 159 HOH HOH . 
N 8 HOH A 82 1032 163 HOH HOH . 
N 8 HOH A 83 1033 164 HOH HOH . 
N 8 HOH A 84 1034 165 HOH HOH . 
N 8 HOH A 85 1035 166 HOH HOH . 
N 8 HOH A 86 1036 167 HOH HOH . 
N 8 HOH A 87 1037 168 HOH HOH . 
N 8 HOH A 88 1038 169 HOH HOH . 
N 8 HOH A 89 1039 170 HOH HOH . 
N 8 HOH A 90 1040 171 HOH HOH . 
N 8 HOH A 91 1041 172 HOH HOH . 
N 8 HOH A 92 1042 173 HOH HOH . 
N 8 HOH A 93 1043 174 HOH HOH . 
N 8 HOH A 94 1044 191 HOH HOH . 
N 8 HOH A 95 1045 192 HOH HOH . 
N 8 HOH A 96 1046 193 HOH HOH . 
N 8 HOH A 97 1047 194 HOH HOH . 
O 8 HOH B 1 951 2 HOH HOH . 
O 8 HOH B 2 952 5 HOH HOH . 
O 8 HOH B 3 953 8 HOH HOH . 
O 8 HOH B 4 954 9 HOH HOH . 
O 8 HOH B 5 955 10 HOH HOH . 
O 8 HOH B 6 956 12 HOH HOH . 
O 8 HOH B 7 957 14 HOH HOH . 
O 8 HOH B 8 958 16 HOH HOH . 
O 8 HOH B 9 959 17 HOH HOH . 
O 8 HOH B 10 960 18 HOH HOH . 
O 8 HOH B 11 961 19 HOH HOH . 
O 8 HOH B 12 962 21 HOH HOH . 
O 8 HOH B 13 963 23 HOH HOH . 
O 8 HOH B 14 964 27 HOH HOH . 
O 8 HOH B 15 965 28 HOH HOH . 
O 8 HOH B 16 966 29 HOH HOH . 
O 8 HOH B 17 967 30 HOH HOH . 
O 8 HOH B 18 968 31 HOH HOH . 
O 8 HOH B 19 969 34 HOH HOH . 
O 8 HOH B 20 970 36 HOH HOH . 
O 8 HOH B 21 971 37 HOH HOH . 
O 8 HOH B 22 972 38 HOH HOH . 
O 8 HOH B 23 973 39 HOH HOH . 
O 8 HOH B 24 974 42 HOH HOH . 
O 8 HOH B 25 975 43 HOH HOH . 
O 8 HOH B 26 976 45 HOH HOH . 
O 8 HOH B 27 977 49 HOH HOH . 
O 8 HOH B 28 978 51 HOH HOH . 
O 8 HOH B 29 979 54 HOH HOH . 
O 8 HOH B 30 980 56 HOH HOH . 
O 8 HOH B 31 981 59 HOH HOH . 
O 8 HOH B 32 982 61 HOH HOH . 
O 8 HOH B 33 983 62 HOH HOH . 
O 8 HOH B 34 984 63 HOH HOH . 
O 8 HOH B 35 985 64 HOH HOH . 
O 8 HOH B 36 986 72 HOH HOH . 
O 8 HOH B 37 987 78 HOH HOH . 
O 8 HOH B 38 988 81 HOH HOH . 
O 8 HOH B 39 989 82 HOH HOH . 
O 8 HOH B 40 990 83 HOH HOH . 
O 8 HOH B 41 991 85 HOH HOH . 
O 8 HOH B 42 992 89 HOH HOH . 
O 8 HOH B 43 993 93 HOH HOH . 
O 8 HOH B 44 994 98 HOH HOH . 
O 8 HOH B 45 995 99 HOH HOH . 
O 8 HOH B 46 996 100 HOH HOH . 
O 8 HOH B 47 997 102 HOH HOH . 
O 8 HOH B 48 998 103 HOH HOH . 
O 8 HOH B 49 999 104 HOH HOH . 
O 8 HOH B 50 1000 107 HOH HOH . 
O 8 HOH B 51 1001 113 HOH HOH . 
O 8 HOH B 52 1002 114 HOH HOH . 
O 8 HOH B 53 1003 115 HOH HOH . 
O 8 HOH B 54 1004 118 HOH HOH . 
O 8 HOH B 55 1005 119 HOH HOH . 
O 8 HOH B 56 1006 120 HOH HOH . 
O 8 HOH B 57 1007 122 HOH HOH . 
O 8 HOH B 58 1008 123 HOH HOH . 
O 8 HOH B 59 1009 124 HOH HOH . 
O 8 HOH B 60 1010 126 HOH HOH . 
O 8 HOH B 61 1011 127 HOH HOH . 
O 8 HOH B 62 1012 128 HOH HOH . 
O 8 HOH B 63 1013 130 HOH HOH . 
O 8 HOH B 64 1014 134 HOH HOH . 
O 8 HOH B 65 1015 135 HOH HOH . 
O 8 HOH B 66 1016 136 HOH HOH . 
O 8 HOH B 67 1017 137 HOH HOH . 
O 8 HOH B 68 1018 139 HOH HOH . 
O 8 HOH B 69 1019 141 HOH HOH . 
O 8 HOH B 70 1020 143 HOH HOH . 
O 8 HOH B 71 1021 144 HOH HOH . 
O 8 HOH B 72 1022 145 HOH HOH . 
O 8 HOH B 73 1023 146 HOH HOH . 
O 8 HOH B 74 1024 147 HOH HOH . 
O 8 HOH B 75 1025 148 HOH HOH . 
O 8 HOH B 76 1026 151 HOH HOH . 
O 8 HOH B 77 1027 152 HOH HOH . 
O 8 HOH B 78 1028 155 HOH HOH . 
O 8 HOH B 79 1029 160 HOH HOH . 
O 8 HOH B 80 1030 161 HOH HOH . 
O 8 HOH B 81 1031 162 HOH HOH . 
O 8 HOH B 82 1032 175 HOH HOH . 
O 8 HOH B 83 1033 176 HOH HOH . 
O 8 HOH B 84 1034 177 HOH HOH . 
O 8 HOH B 85 1035 178 HOH HOH . 
O 8 HOH B 86 1036 179 HOH HOH . 
O 8 HOH B 87 1037 180 HOH HOH . 
O 8 HOH B 88 1038 181 HOH HOH . 
O 8 HOH B 89 1039 182 HOH HOH . 
O 8 HOH B 90 1040 183 HOH HOH . 
O 8 HOH B 91 1041 184 HOH HOH . 
O 8 HOH B 92 1042 185 HOH HOH . 
O 8 HOH B 93 1043 186 HOH HOH . 
O 8 HOH B 94 1044 187 HOH HOH . 
O 8 HOH B 95 1045 188 HOH HOH . 
O 8 HOH B 96 1046 189 HOH HOH . 
O 8 HOH B 97 1047 190 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 7 -0.168 -0.11 57.879 1 48.82 ? C1 GOL 881 B 1 
HETATM 2 O O1 GOL . . . M 7 1.197 -0.147 57.503 1 53.68 ? O1 GOL 881 B 1 
HETATM 3 C C2 GOL . . . M 7 -1.021 0.476 56.759 1 43.2 ? C2 GOL 881 B 1 
HETATM 4 O O2 GOL . . . M 7 -1.352 1.829 57.081 1 45.78 ? O2 GOL 881 B 1 
HETATM 5 C C3 GOL . . . M 7 -2.295 -0.348 56.605 1 46.59 ? C3 GOL 881 B 1 
HETATM 6 O O3 GOL . . . M 7 -3.091 0.113 55.524 1 45.14 ? O3 GOL 881 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#