data_8OE3 # _model_server_result.job_id ovt1xRuSY10M0Xvuid592w _model_server_result.datetime_utc '2024-10-10 13:32:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oe3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":104}' # _entry.id 8OE3 # _exptl.entry_id 8OE3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 161.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT HEXAMMINE(III)' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OE3 _cell.length_a 22.157 _cell.length_b 59.156 _cell.length_c 45.666 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OE3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 22.833 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog 'DG-DC PAIR' hydrog1 A N2 DG 1 A DG 1 1_555 A O2 DC 6 A DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog2 A O2 DC 2 A DC 2 1_555 A N2 DG 5 A DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog3 B N2 DG 1 B DG 1 1_555 B O2 DC 6 B DC 6 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog4 B N2 DG 1 B DG 1 1_555 B O2 DC 6 B DC 6 1_555 ? B ? ? B ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog5 B O2 DC 2 B DC 2 1_555 B N2 DG 5 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Co H18 N6 3' _chem_comp.formula_weight 161.116 _chem_comp.id NCO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT HEXAMMINE(III)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CO N1 NCO sing 152 n n CO N2 NCO sing 153 n n CO N3 NCO sing 154 n n CO N4 NCO sing 155 n n CO N5 NCO sing 156 n n CO N6 NCO sing 157 n n N1 HN11 NCO sing 158 n n N1 HN12 NCO sing 159 n n N1 HN13 NCO sing 160 n n N2 HN21 NCO sing 161 n n N2 HN22 NCO sing 162 n n N2 HN23 NCO sing 163 n n N3 HN31 NCO sing 164 n n N3 HN32 NCO sing 165 n n N3 HN33 NCO sing 166 n n N4 HN41 NCO sing 167 n n N4 HN42 NCO sing 168 n n N4 HN43 NCO sing 169 n n N5 HN51 NCO sing 170 n n N5 HN52 NCO sing 171 n n N5 HN53 NCO sing 172 n n N6 HN61 NCO sing 173 n n N6 HN62 NCO sing 174 n n N6 HN63 NCO sing 175 n n # _atom_sites.entry_id 8OE3 _atom_sites.fract_transf_matrix[1][1] 0.045132 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NCO A 1 101 101 NCO NCO . D 2 NCO A 1 102 103 NCO NCO . E 2 NCO A 1 103 104 NCO NCO . F 2 NCO A 1 104 105 NCO NCO . G 2 NCO A 1 105 107 NCO NCO . H 2 NCO B 1 101 108 NCO NCO . I 3 HOH A 1 201 65 HOH HOH . I 3 HOH A 2 202 52 HOH HOH . I 3 HOH A 3 203 56 HOH HOH . I 3 HOH A 4 204 62 HOH HOH . I 3 HOH A 5 205 25 HOH HOH . I 3 HOH A 6 206 30 HOH HOH . I 3 HOH A 7 207 1 HOH HOH . I 3 HOH A 8 208 3 HOH HOH . I 3 HOH A 9 209 59 HOH HOH . I 3 HOH A 10 210 60 HOH HOH . I 3 HOH A 11 211 2 HOH HOH . I 3 HOH A 12 212 20 HOH HOH . I 3 HOH A 13 213 51 HOH HOH . I 3 HOH A 14 214 5 HOH HOH . I 3 HOH A 15 215 13 HOH HOH . I 3 HOH A 16 216 17 HOH HOH . I 3 HOH A 17 217 14 HOH HOH . I 3 HOH A 18 218 39 HOH HOH . I 3 HOH A 19 219 12 HOH HOH . I 3 HOH A 20 220 32 HOH HOH . I 3 HOH A 21 221 50 HOH HOH . I 3 HOH A 22 222 64 HOH HOH . J 3 HOH B 1 201 40 HOH HOH . J 3 HOH B 2 202 55 HOH HOH . J 3 HOH B 3 203 22 HOH HOH . J 3 HOH B 4 204 26 HOH HOH . J 3 HOH B 5 205 16 HOH HOH . J 3 HOH B 6 206 31 HOH HOH . J 3 HOH B 7 207 10 HOH HOH . J 3 HOH B 8 208 34 HOH HOH . J 3 HOH B 9 209 21 HOH HOH . J 3 HOH B 10 210 4 HOH HOH . J 3 HOH B 11 211 38 HOH HOH . J 3 HOH B 12 212 9 HOH HOH . J 3 HOH B 13 213 28 HOH HOH . J 3 HOH B 14 214 18 HOH HOH . J 3 HOH B 15 215 24 HOH HOH . J 3 HOH B 16 216 15 HOH HOH . J 3 HOH B 17 217 8 HOH HOH . J 3 HOH B 18 218 11 HOH HOH . J 3 HOH B 19 219 7 HOH HOH . J 3 HOH B 20 220 6 HOH HOH . J 3 HOH B 21 221 37 HOH HOH . J 3 HOH B 22 222 29 HOH HOH . J 3 HOH B 23 223 48 HOH HOH . J 3 HOH B 24 224 19 HOH HOH . J 3 HOH B 25 225 46 HOH HOH . J 3 HOH B 26 226 35 HOH HOH . J 3 HOH B 27 227 23 HOH HOH . J 3 HOH B 28 228 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CO CO NCO . . . F 2 11.122 4.348 11.33 0.49 33.03 ? CO NCO 104 A 1 HETATM 2 N N1 NCO . . . F 2 11.312 6.267 10.864 0.49 32.87 ? N1 NCO 104 A 1 HETATM 3 N N2 NCO . . . F 2 10.947 2.42 11.761 0.49 33.64 ? N2 NCO 104 A 1 HETATM 4 N N3 NCO . . . F 2 12.273 3.922 9.768 0.49 34.67 ? N3 NCO 104 A 1 HETATM 5 N N4 NCO . . . F 2 9.486 4.279 10.202 0.49 33.69 ? N4 NCO 104 A 1 HETATM 6 N N5 NCO . . . F 2 9.967 4.817 12.867 0.49 34.58 ? N5 NCO 104 A 1 HETATM 7 N N6 NCO . . . F 2 12.756 4.428 12.465 0.49 33.7 ? N6 NCO 104 A 1 HETATM 8 H HN11 NCO . . . F 2 12.152 6.658 11.337 0.49 39.45 ? HN11 NCO 104 A 1 HETATM 9 H HN12 NCO . . . F 2 11.417 6.365 9.834 0.49 39.45 ? HN12 NCO 104 A 1 HETATM 10 H HN13 NCO . . . F 2 10.466 6.785 11.177 0.49 39.45 ? HN13 NCO 104 A 1 HETATM 11 H HN21 NCO . . . F 2 11.722 2.134 12.393 0.49 40.37 ? HN21 NCO 104 A 1 HETATM 12 H HN22 NCO . . . F 2 10.036 2.251 12.233 0.49 40.37 ? HN22 NCO 104 A 1 HETATM 13 H HN23 NCO . . . F 2 10.991 1.863 10.884 0.49 40.37 ? HN23 NCO 104 A 1 HETATM 14 H HN31 NCO . . . F 2 13.268 3.893 10.068 0.49 41.61 ? HN31 NCO 104 A 1 HETATM 15 H HN32 NCO . . . F 2 12.001 2.996 9.379 0.49 41.61 ? HN32 NCO 104 A 1 HETATM 16 H HN33 NCO . . . F 2 12.152 4.653 9.038 0.49 41.61 ? HN33 NCO 104 A 1 HETATM 17 H HN41 NCO . . . F 2 8.88 5.095 10.42 0.49 40.43 ? HN41 NCO 104 A 1 HETATM 18 H HN42 NCO . . . F 2 9.756 4.306 9.198 0.49 40.43 ? HN42 NCO 104 A 1 HETATM 19 H HN43 NCO . . . F 2 8.967 3.399 10.398 0.49 40.43 ? HN43 NCO 104 A 1 HETATM 20 H HN51 NCO . . . F 2 10.554 4.947 13.716 0.49 41.5 ? HN51 NCO 104 A 1 HETATM 21 H HN52 NCO . . . F 2 9.457 5.699 12.661 0.49 41.5 ? HN52 NCO 104 A 1 HETATM 22 H HN53 NCO . . . F 2 9.283 4.052 13.033 0.49 41.5 ? HN53 NCO 104 A 1 HETATM 23 H HN61 NCO . . . F 2 13.327 3.573 12.311 0.49 40.44 ? HN61 NCO 104 A 1 HETATM 24 H HN62 NCO . . . F 2 13.314 5.268 12.211 0.49 40.44 ? HN62 NCO 104 A 1 HETATM 25 H HN63 NCO . . . F 2 12.481 4.485 13.466 0.49 40.44 ? HN63 NCO 104 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #