data_8OEP # _model_server_result.job_id MwVEE-RPVoW72MUmwo0R_A _model_server_result.datetime_utc '2025-02-05 09:59:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oep # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 8OEP # _exptl.entry_id 8OEP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8OEP _cell.length_a 82.23 _cell.length_b 82.23 _cell.length_c 139.2 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OEP _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G 1 1 C,D,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id ILE _struct_conn.ptnr1_label_seq_id 84 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ILE _struct_conn.ptnr1_auth_seq_id 67 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.78 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8OEP _atom_sites.fract_transf_matrix[1][1] 0.012161 _atom_sites.fract_transf_matrix[1][2] 0.007021 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA A 1 101 3 NA NA . F 4 HOH A 1 201 38 HOH HOH . F 4 HOH A 2 202 9 HOH HOH . F 4 HOH A 3 203 6 HOH HOH . F 4 HOH A 4 204 52 HOH HOH . F 4 HOH A 5 205 3 HOH HOH . F 4 HOH A 6 206 81 HOH HOH . F 4 HOH A 7 207 19 HOH HOH . F 4 HOH A 8 208 45 HOH HOH . F 4 HOH A 9 209 15 HOH HOH . F 4 HOH A 10 210 25 HOH HOH . F 4 HOH A 11 211 90 HOH HOH . F 4 HOH A 12 212 66 HOH HOH . F 4 HOH A 13 213 56 HOH HOH . F 4 HOH A 14 214 127 HOH HOH . F 4 HOH A 15 215 37 HOH HOH . F 4 HOH A 16 216 69 HOH HOH . F 4 HOH A 17 217 14 HOH HOH . F 4 HOH A 18 218 34 HOH HOH . F 4 HOH A 19 219 83 HOH HOH . F 4 HOH A 20 220 4 HOH HOH . F 4 HOH A 21 221 107 HOH HOH . F 4 HOH A 22 222 121 HOH HOH . F 4 HOH A 23 223 100 HOH HOH . F 4 HOH A 24 224 30 HOH HOH . F 4 HOH A 25 225 16 HOH HOH . F 4 HOH A 26 226 8 HOH HOH . F 4 HOH A 27 227 65 HOH HOH . F 4 HOH A 28 228 32 HOH HOH . F 4 HOH A 29 229 7 HOH HOH . F 4 HOH A 30 230 86 HOH HOH . F 4 HOH A 31 231 26 HOH HOH . F 4 HOH A 32 232 12 HOH HOH . F 4 HOH A 33 233 79 HOH HOH . F 4 HOH A 34 234 18 HOH HOH . F 4 HOH A 35 235 84 HOH HOH . F 4 HOH A 36 236 47 HOH HOH . F 4 HOH A 37 237 28 HOH HOH . F 4 HOH A 38 238 78 HOH HOH . F 4 HOH A 39 239 27 HOH HOH . F 4 HOH A 40 240 142 HOH HOH . F 4 HOH A 41 241 112 HOH HOH . F 4 HOH A 42 242 67 HOH HOH . F 4 HOH A 43 243 116 HOH HOH . F 4 HOH A 44 244 57 HOH HOH . F 4 HOH A 45 245 96 HOH HOH . F 4 HOH A 46 246 93 HOH HOH . F 4 HOH A 47 247 82 HOH HOH . F 4 HOH A 48 248 120 HOH HOH . F 4 HOH A 49 249 71 HOH HOH . F 4 HOH A 50 250 64 HOH HOH . F 4 HOH A 51 251 31 HOH HOH . F 4 HOH A 52 252 87 HOH HOH . F 4 HOH A 53 253 85 HOH HOH . F 4 HOH A 54 254 74 HOH HOH . F 4 HOH A 55 255 138 HOH HOH . F 4 HOH A 56 256 91 HOH HOH . F 4 HOH A 57 257 105 HOH HOH . F 4 HOH A 58 258 140 HOH HOH . F 4 HOH A 59 259 124 HOH HOH . F 4 HOH A 60 260 94 HOH HOH . F 4 HOH A 61 261 131 HOH HOH . F 4 HOH A 62 262 139 HOH HOH . F 4 HOH A 63 263 132 HOH HOH . F 4 HOH A 64 264 95 HOH HOH . F 4 HOH A 65 265 126 HOH HOH . G 4 HOH B 1 101 104 HOH HOH . G 4 HOH B 2 102 58 HOH HOH . G 4 HOH B 3 103 137 HOH HOH . G 4 HOH B 4 104 51 HOH HOH . G 4 HOH B 5 105 48 HOH HOH . G 4 HOH B 6 106 41 HOH HOH . G 4 HOH B 7 107 88 HOH HOH . G 4 HOH B 8 108 136 HOH HOH . G 4 HOH B 9 109 73 HOH HOH . G 4 HOH B 10 110 75 HOH HOH . G 4 HOH B 11 111 130 HOH HOH . H 4 HOH C 1 101 102 HOH HOH . H 4 HOH C 2 102 113 HOH HOH . H 4 HOH C 3 103 11 HOH HOH . H 4 HOH C 4 104 21 HOH HOH . H 4 HOH C 5 105 89 HOH HOH . H 4 HOH C 6 106 98 HOH HOH . H 4 HOH C 7 107 35 HOH HOH . H 4 HOH C 8 108 103 HOH HOH . H 4 HOH C 9 109 42 HOH HOH . H 4 HOH C 10 110 54 HOH HOH . H 4 HOH C 11 111 59 HOH HOH . H 4 HOH C 12 112 63 HOH HOH . H 4 HOH C 13 113 17 HOH HOH . H 4 HOH C 14 114 62 HOH HOH . H 4 HOH C 15 115 122 HOH HOH . H 4 HOH C 16 116 61 HOH HOH . H 4 HOH C 17 117 123 HOH HOH . H 4 HOH C 18 118 49 HOH HOH . H 4 HOH C 19 119 128 HOH HOH . H 4 HOH C 20 120 72 HOH HOH . H 4 HOH C 21 121 39 HOH HOH . H 4 HOH C 22 122 53 HOH HOH . H 4 HOH C 23 123 5 HOH HOH . H 4 HOH C 24 124 13 HOH HOH . H 4 HOH C 25 125 46 HOH HOH . H 4 HOH C 26 126 24 HOH HOH . H 4 HOH C 27 127 50 HOH HOH . H 4 HOH C 28 128 76 HOH HOH . H 4 HOH C 29 129 10 HOH HOH . H 4 HOH C 30 130 23 HOH HOH . H 4 HOH C 31 131 20 HOH HOH . H 4 HOH C 32 132 115 HOH HOH . H 4 HOH C 33 133 129 HOH HOH . H 4 HOH C 34 134 110 HOH HOH . H 4 HOH C 35 135 111 HOH HOH . H 4 HOH C 36 136 135 HOH HOH . H 4 HOH C 37 137 44 HOH HOH . H 4 HOH C 38 138 143 HOH HOH . H 4 HOH C 39 139 43 HOH HOH . H 4 HOH C 40 140 92 HOH HOH . H 4 HOH C 41 141 36 HOH HOH . H 4 HOH C 42 142 108 HOH HOH . H 4 HOH C 43 143 119 HOH HOH . H 4 HOH C 44 144 33 HOH HOH . H 4 HOH C 45 145 22 HOH HOH . H 4 HOH C 46 146 97 HOH HOH . H 4 HOH C 47 147 109 HOH HOH . H 4 HOH C 48 148 80 HOH HOH . H 4 HOH C 49 149 118 HOH HOH . H 4 HOH C 50 150 141 HOH HOH . I 4 HOH D 1 101 40 HOH HOH . I 4 HOH D 2 102 55 HOH HOH . I 4 HOH D 3 103 134 HOH HOH . I 4 HOH D 4 104 114 HOH HOH . I 4 HOH D 5 105 133 HOH HOH . I 4 HOH D 6 106 125 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -13.817 _atom_site.Cartn_y -37.155 _atom_site.Cartn_z 24.067 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 84.6 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #