data_8OF5
#
_model_server_result.job_id            TLftgMkMYBUQEkvvKc7TCg 
_model_server_result.datetime_utc      '2024-12-27 00:51:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8of5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    8OF5 
#
_exptl.entry_id    8OF5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8OF5 
_cell.length_a            83.49 
_cell.length_b            83.49 
_cell.length_c            116.57 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OF5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -58.285 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 143 A ASN 261 1_555 H MG MG . A MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc2 A OD1 ASP 156 A ASP 274 1_555 H MG MG . A MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc3 A OD1 ASP 156 A ASP 274 1_555 I MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc4 A OD2 ASP 156 A ASP 274 1_555 I MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc5 B O3B ADP . A ADP 501 1_555 H MG MG . A MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc6 B O2A ADP . A ADP 501 1_555 H MG MG . A MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc7 B O1B ADP . A ADP 501 1_555 I MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc8 H MG MG . A MG 507 1_555 K O HOH . A HOH 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc9 H MG MG . A MG 507 1_555 K O HOH . A HOH 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc10 I MG MG . A MG 508 1_555 K O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? 
metalc ? metalc11 I MG MG . A MG 508 1_555 K O HOH . A HOH 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? 
metalc ? metalc12 I MG MG . A MG 508 1_555 K O HOH . A HOH 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc13 J MG MG . A MG 509 1_555 K O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 206 n n 
C1 C2 GOL sing 207 n n 
C1 H11 GOL sing 208 n n 
C1 H12 GOL sing 209 n n 
O1 HO1 GOL sing 210 n n 
C2 O2 GOL sing 211 n n 
C2 C3 GOL sing 212 n n 
C2 H2 GOL sing 213 n n 
O2 HO2 GOL sing 214 n n 
C3 O3 GOL sing 215 n n 
C3 H31 GOL sing 216 n n 
C3 H32 GOL sing 217 n n 
O3 HO3 GOL sing 218 n n 
#
_atom_sites.entry_id                     8OF5 
_atom_sites.fract_transf_matrix[1][1]    0.011977 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011977 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008579 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 501 401 ADP ADP . 
C 3 EPE A 1 502 402 EPE EPE . 
D 4 GOL A 1 503 403 GOL GOL . 
E 4 GOL A 1 504 406 GOL GOL . 
F 5 MPO A 1 505 407 MPO MPO . 
G 6 NO3 A 1 506 409 NO3 NO3 . 
H 7 MG A 1 507 411 MG MG . 
I 7 MG A 1 508 412 MG MG . 
J 7 MG A 1 509 413 MG MG . 
K 8 HOH A 1 601 83 HOH HOH . 
K 8 HOH A 2 602 93 HOH HOH . 
K 8 HOH A 3 603 45 HOH HOH . 
K 8 HOH A 4 604 69 HOH HOH . 
K 8 HOH A 5 605 89 HOH HOH . 
K 8 HOH A 6 606 30 HOH HOH . 
K 8 HOH A 7 607 95 HOH HOH . 
K 8 HOH A 8 608 54 HOH HOH . 
K 8 HOH A 9 609 62 HOH HOH . 
K 8 HOH A 10 610 40 HOH HOH . 
K 8 HOH A 11 611 97 HOH HOH . 
K 8 HOH A 12 612 139 HOH HOH . 
K 8 HOH A 13 613 48 HOH HOH . 
K 8 HOH A 14 614 58 HOH HOH . 
K 8 HOH A 15 615 7 HOH HOH . 
K 8 HOH A 16 616 72 HOH HOH . 
K 8 HOH A 17 617 66 HOH HOH . 
K 8 HOH A 18 618 120 HOH HOH . 
K 8 HOH A 19 619 56 HOH HOH . 
K 8 HOH A 20 620 84 HOH HOH . 
K 8 HOH A 21 621 113 HOH HOH . 
K 8 HOH A 22 622 75 HOH HOH . 
K 8 HOH A 23 623 104 HOH HOH . 
K 8 HOH A 24 624 22 HOH HOH . 
K 8 HOH A 25 625 90 HOH HOH . 
K 8 HOH A 26 626 125 HOH HOH . 
K 8 HOH A 27 627 85 HOH HOH . 
K 8 HOH A 28 628 59 HOH HOH . 
K 8 HOH A 29 629 36 HOH HOH . 
K 8 HOH A 30 630 74 HOH HOH . 
K 8 HOH A 31 631 53 HOH HOH . 
K 8 HOH A 32 632 35 HOH HOH . 
K 8 HOH A 33 633 101 HOH HOH . 
K 8 HOH A 34 634 123 HOH HOH . 
K 8 HOH A 35 635 37 HOH HOH . 
K 8 HOH A 36 636 12 HOH HOH . 
K 8 HOH A 37 637 61 HOH HOH . 
K 8 HOH A 38 638 68 HOH HOH . 
K 8 HOH A 39 639 65 HOH HOH . 
K 8 HOH A 40 640 103 HOH HOH . 
K 8 HOH A 41 641 127 HOH HOH . 
K 8 HOH A 42 642 81 HOH HOH . 
K 8 HOH A 43 643 13 HOH HOH . 
K 8 HOH A 44 644 29 HOH HOH . 
K 8 HOH A 45 645 33 HOH HOH . 
K 8 HOH A 46 646 102 HOH HOH . 
K 8 HOH A 47 647 110 HOH HOH . 
K 8 HOH A 48 648 21 HOH HOH . 
K 8 HOH A 49 649 46 HOH HOH . 
K 8 HOH A 50 650 115 HOH HOH . 
K 8 HOH A 51 651 47 HOH HOH . 
K 8 HOH A 52 652 114 HOH HOH . 
K 8 HOH A 53 653 64 HOH HOH . 
K 8 HOH A 54 654 91 HOH HOH . 
K 8 HOH A 55 655 55 HOH HOH . 
K 8 HOH A 56 656 16 HOH HOH . 
K 8 HOH A 57 657 70 HOH HOH . 
K 8 HOH A 58 658 94 HOH HOH . 
K 8 HOH A 59 659 39 HOH HOH . 
K 8 HOH A 60 660 15 HOH HOH . 
K 8 HOH A 61 661 38 HOH HOH . 
K 8 HOH A 62 662 34 HOH HOH . 
K 8 HOH A 63 663 44 HOH HOH . 
K 8 HOH A 64 664 76 HOH HOH . 
K 8 HOH A 65 665 17 HOH HOH . 
K 8 HOH A 66 666 86 HOH HOH . 
K 8 HOH A 67 667 111 HOH HOH . 
K 8 HOH A 68 668 79 HOH HOH . 
K 8 HOH A 69 669 9 HOH HOH . 
K 8 HOH A 70 670 43 HOH HOH . 
K 8 HOH A 71 671 24 HOH HOH . 
K 8 HOH A 72 672 6 HOH HOH . 
K 8 HOH A 73 673 108 HOH HOH . 
K 8 HOH A 74 674 52 HOH HOH . 
K 8 HOH A 75 675 71 HOH HOH . 
K 8 HOH A 76 676 136 HOH HOH . 
K 8 HOH A 77 677 87 HOH HOH . 
K 8 HOH A 78 678 4 HOH HOH . 
K 8 HOH A 79 679 19 HOH HOH . 
K 8 HOH A 80 680 31 HOH HOH . 
K 8 HOH A 81 681 107 HOH HOH . 
K 8 HOH A 82 682 10 HOH HOH . 
K 8 HOH A 83 683 18 HOH HOH . 
K 8 HOH A 84 684 11 HOH HOH . 
K 8 HOH A 85 685 42 HOH HOH . 
K 8 HOH A 86 686 138 HOH HOH . 
K 8 HOH A 87 687 121 HOH HOH . 
K 8 HOH A 88 688 26 HOH HOH . 
K 8 HOH A 89 689 82 HOH HOH . 
K 8 HOH A 90 690 51 HOH HOH . 
K 8 HOH A 91 691 96 HOH HOH . 
K 8 HOH A 92 692 41 HOH HOH . 
K 8 HOH A 93 693 122 HOH HOH . 
K 8 HOH A 94 694 28 HOH HOH . 
K 8 HOH A 95 695 23 HOH HOH . 
K 8 HOH A 96 696 20 HOH HOH . 
K 8 HOH A 97 697 3 HOH HOH . 
K 8 HOH A 98 698 27 HOH HOH . 
K 8 HOH A 99 699 50 HOH HOH . 
K 8 HOH A 100 700 32 HOH HOH . 
K 8 HOH A 101 701 2 HOH HOH . 
K 8 HOH A 102 702 14 HOH HOH . 
K 8 HOH A 103 703 8 HOH HOH . 
K 8 HOH A 104 704 25 HOH HOH . 
K 8 HOH A 105 705 60 HOH HOH . 
K 8 HOH A 106 706 67 HOH HOH . 
K 8 HOH A 107 707 106 HOH HOH . 
K 8 HOH A 108 708 5 HOH HOH . 
K 8 HOH A 109 709 98 HOH HOH . 
K 8 HOH A 110 710 112 HOH HOH . 
K 8 HOH A 111 711 49 HOH HOH . 
K 8 HOH A 112 712 116 HOH HOH . 
K 8 HOH A 113 713 92 HOH HOH . 
K 8 HOH A 114 714 135 HOH HOH . 
K 8 HOH A 115 715 57 HOH HOH . 
K 8 HOH A 116 716 99 HOH HOH . 
K 8 HOH A 117 717 88 HOH HOH . 
K 8 HOH A 118 718 63 HOH HOH . 
K 8 HOH A 119 719 130 HOH HOH . 
K 8 HOH A 120 720 78 HOH HOH . 
K 8 HOH A 121 721 109 HOH HOH . 
K 8 HOH A 122 722 80 HOH HOH . 
K 8 HOH A 123 723 1 HOH HOH . 
K 8 HOH A 124 724 100 HOH HOH . 
K 8 HOH A 125 725 118 HOH HOH . 
K 8 HOH A 126 726 124 HOH HOH . 
K 8 HOH A 127 727 129 HOH HOH . 
K 8 HOH A 128 728 128 HOH HOH . 
K 8 HOH A 129 729 73 HOH HOH . 
K 8 HOH A 130 730 133 HOH HOH . 
K 8 HOH A 131 731 134 HOH HOH . 
K 8 HOH A 132 732 117 HOH HOH . 
K 8 HOH A 133 733 131 HOH HOH . 
K 8 HOH A 134 734 119 HOH HOH . 
K 8 HOH A 135 735 105 HOH HOH . 
K 8 HOH A 136 736 77 HOH HOH . 
K 8 HOH A 137 737 126 HOH HOH . 
K 8 HOH A 138 738 132 HOH HOH . 
K 8 HOH A 139 739 137 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -5.455 -19.268 -6.766 1 97.09 0 C1 GOL 503 A 1 
HETATM 2 O O1 GOL . . . D 4 -5.911 -18.78 -5.506 1 92.92 0 O1 GOL 503 A 1 
HETATM 3 C C2 GOL . . . D 4 -6.232 -20.499 -7.179 1 94.21 0 C2 GOL 503 A 1 
HETATM 4 O O2 GOL . . . D 4 -6.908 -20.219 -8.41 1 98.81 0 O2 GOL 503 A 1 
HETATM 5 C C3 GOL . . . D 4 -5.364 -21.743 -7.261 1 94.56 0 C3 GOL 503 A 1 
HETATM 6 O O3 GOL . . . D 4 -5.409 -22.394 -8.537 1 77.59 0 O3 GOL 503 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#