data_8OFL
#
_model_server_result.job_id            tiiQYV9VCZ6_0tpy8Hu1pg 
_model_server_result.datetime_utc      '2024-11-20 17:31:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ofl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    8OFL 
#
_exptl.entry_id    8OFL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              654.709 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'coproporphyrin III' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.742 
_cell.angle_gamma         90 
_cell.entry_id            8OFL 
_cell.length_a            37.439 
_cell.length_b            67.638 
_cell.length_c            63.178 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OFL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 12 A TYR 12 1_555 F FE FE2 . A FE2 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc2 D N1 HT9 . A HT9 403 1_555 F FE FE2 . A FE2 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc3 D N2 HT9 . A HT9 403 1_555 F FE FE2 . A FE2 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? 
metalc ? metalc4 D N3 HT9 . A HT9 403 1_555 F FE FE2 . A FE2 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc5 D N4 HT9 . A HT9 403 1_555 F FE FE2 . A FE2 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
#
_chem_comp.formula           'C36 H38 N4 O8' 
_chem_comp.formula_weight    654.709 
_chem_comp.id                HT9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'coproporphyrin III' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C24 C16 HT9 sing 180 n n 
C16 C15 HT9 doub 181 n y 
C16 C17 HT9 sing 182 n y 
C27 C15 HT9 sing 183 n n 
C27 C28 HT9 sing 184 n n 
C35 C10 HT9 sing 185 n n 
C15 C18 HT9 sing 186 n y 
C20 C17 HT9 sing 187 n y 
C20 C13 HT9 doub 188 n y 
C28 C29 HT9 sing 189 n n 
C17 N4 HT9 doub 190 n y 
O5 C29 HT9 doub 191 n n 
C29 O6 HT9 sing 192 n n 
C10 C13 HT9 sing 193 n y 
C10 C11 HT9 doub 194 n y 
C13 N3 HT9 sing 195 n y 
C18 N4 HT9 sing 196 n y 
C18 C19 HT9 doub 197 n y 
C22 C21 HT9 sing 198 n n 
C22 C23 HT9 sing 199 n n 
C11 C21 HT9 sing 200 n n 
C11 C12 HT9 sing 201 n y 
C19 C3 HT9 sing 202 n y 
N3 C12 HT9 sing 203 n y 
O2 C23 HT9 doub 204 n n 
C23 O1 HT9 sing 205 n n 
C12 C14 HT9 doub 206 n y 
C3 N1 HT9 doub 207 n y 
C3 C2 HT9 sing 208 n y 
N1 C4 HT9 sing 209 n y 
C36 C2 HT9 sing 210 n n 
C14 C8 HT9 sing 211 n y 
C2 C1 HT9 doub 212 n y 
O3 C26 HT9 doub 213 n n 
N2 C8 HT9 sing 214 n y 
N2 C7 HT9 sing 215 n y 
C8 C5 HT9 doub 216 n y 
C4 C1 HT9 sing 217 n y 
C4 C9 HT9 doub 218 n y 
O4 C26 HT9 sing 219 n n 
C1 C34 HT9 sing 220 n n 
C26 C25 HT9 sing 221 n n 
C7 C9 HT9 sing 222 n y 
C7 C6 HT9 doub 223 n y 
C5 C6 HT9 sing 224 n y 
C5 C30 HT9 sing 225 n n 
C34 C25 HT9 sing 226 n n 
C31 C30 HT9 sing 227 n n 
C31 C32 HT9 sing 228 n n 
C6 C33 HT9 sing 229 n n 
O7 C32 HT9 doub 230 n n 
C32 O8 HT9 sing 231 n n 
C14 H1 HT9 sing 232 n n 
C19 H2 HT9 sing 233 n n 
C20 H3 HT9 sing 234 n n 
C21 H4 HT9 sing 235 n n 
C21 H5 HT9 sing 236 n n 
C22 H6 HT9 sing 237 n n 
C22 H7 HT9 sing 238 n n 
C24 H8 HT9 sing 239 n n 
C24 H9 HT9 sing 240 n n 
C24 H10 HT9 sing 241 n n 
C25 H11 HT9 sing 242 n n 
C25 H12 HT9 sing 243 n n 
C27 H13 HT9 sing 244 n n 
C27 H14 HT9 sing 245 n n 
C28 H15 HT9 sing 246 n n 
C28 H16 HT9 sing 247 n n 
C30 H17 HT9 sing 248 n n 
C30 H18 HT9 sing 249 n n 
C31 H19 HT9 sing 250 n n 
C31 H20 HT9 sing 251 n n 
C33 H21 HT9 sing 252 n n 
C33 H22 HT9 sing 253 n n 
C33 H23 HT9 sing 254 n n 
C34 H24 HT9 sing 255 n n 
C34 H25 HT9 sing 256 n n 
C35 H26 HT9 sing 257 n n 
C35 H27 HT9 sing 258 n n 
C35 H28 HT9 sing 259 n n 
C36 H29 HT9 sing 260 n n 
C36 H30 HT9 sing 261 n n 
C36 H31 HT9 sing 262 n n 
C9 H32 HT9 sing 263 n n 
N3 H34 HT9 sing 264 n n 
O1 H35 HT9 sing 265 n n 
O4 H36 HT9 sing 266 n n 
O6 H37 HT9 sing 267 n n 
O8 H38 HT9 sing 268 n n 
N2 H33 HT9 sing 269 n n 
#
_atom_sites.entry_id                     8OFL 
_atom_sites.fract_transf_matrix[1][1]    0.02671 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00604 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014785 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016228 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 401 406 GOL GOL . 
C 3 ACT A 1 402 409 ACT ACT . 
D 4 HT9 A 1 403 410 HT9 VEC . 
E 5 EDO A 1 404 411 EDO EDO . 
F 6 FE2 A 1 405 1 FE2 FE . 
G 3 ACT A 1 406 1 ACT ACT . 
H 7 HOH A 1 501 16 HOH HOH . 
H 7 HOH A 2 502 1 HOH HOH . 
H 7 HOH A 3 503 40 HOH HOH . 
H 7 HOH A 4 504 9 HOH HOH . 
H 7 HOH A 5 505 7 HOH HOH . 
H 7 HOH A 6 506 39 HOH HOH . 
H 7 HOH A 7 507 36 HOH HOH . 
H 7 HOH A 8 508 14 HOH HOH . 
H 7 HOH A 9 509 54 HOH HOH . 
H 7 HOH A 10 510 31 HOH HOH . 
H 7 HOH A 11 511 34 HOH HOH . 
H 7 HOH A 12 512 47 HOH HOH . 
H 7 HOH A 13 513 56 HOH HOH . 
H 7 HOH A 14 514 55 HOH HOH . 
H 7 HOH A 15 515 26 HOH HOH . 
H 7 HOH A 16 516 6 HOH HOH . 
H 7 HOH A 17 517 42 HOH HOH . 
H 7 HOH A 18 518 11 HOH HOH . 
H 7 HOH A 19 519 15 HOH HOH . 
H 7 HOH A 20 520 4 HOH HOH . 
H 7 HOH A 21 521 41 HOH HOH . 
H 7 HOH A 22 522 21 HOH HOH . 
H 7 HOH A 23 523 5 HOH HOH . 
H 7 HOH A 24 524 17 HOH HOH . 
H 7 HOH A 25 525 2 HOH HOH . 
H 7 HOH A 26 526 19 HOH HOH . 
H 7 HOH A 27 527 23 HOH HOH . 
H 7 HOH A 28 528 45 HOH HOH . 
H 7 HOH A 29 529 20 HOH HOH . 
H 7 HOH A 30 530 35 HOH HOH . 
H 7 HOH A 31 531 25 HOH HOH . 
H 7 HOH A 32 532 24 HOH HOH . 
H 7 HOH A 33 533 10 HOH HOH . 
H 7 HOH A 34 534 37 HOH HOH . 
H 7 HOH A 35 535 53 HOH HOH . 
H 7 HOH A 36 536 62 HOH HOH . 
H 7 HOH A 37 537 44 HOH HOH . 
H 7 HOH A 38 538 29 HOH HOH . 
H 7 HOH A 39 539 30 HOH HOH . 
H 7 HOH A 40 540 3 HOH HOH . 
H 7 HOH A 41 541 12 HOH HOH . 
H 7 HOH A 42 542 18 HOH HOH . 
H 7 HOH A 43 543 61 HOH HOH . 
H 7 HOH A 44 544 38 HOH HOH . 
H 7 HOH A 45 545 8 HOH HOH . 
H 7 HOH A 46 546 50 HOH HOH . 
H 7 HOH A 47 547 28 HOH HOH . 
H 7 HOH A 48 548 13 HOH HOH . 
H 7 HOH A 49 549 60 HOH HOH . 
H 7 HOH A 50 550 22 HOH HOH . 
H 7 HOH A 51 551 63 HOH HOH . 
H 7 HOH A 52 552 32 HOH HOH . 
H 7 HOH A 53 553 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HT9 . . . D 4 12.726 10.576 16.041 1 49.9 ? C1 HT9 403 A 1 
HETATM 2 C C10 HT9 . . . D 4 4.936 12.648 19.196 1 41.74 ? C10 HT9 403 A 1 
HETATM 3 C C11 HT9 . . . D 4 5.41 13.905 18.971 1 44.15 ? C11 HT9 403 A 1 
HETATM 4 C C12 HT9 . . . D 4 6.768 13.742 18.464 1 45.45 ? C12 HT9 403 A 1 
HETATM 5 C C13 HT9 . . . D 4 6.054 11.74 18.928 1 42.48 ? C13 HT9 403 A 1 
HETATM 6 C C14 HT9 . . . D 4 7.577 14.778 18.052 1 48.05 ? C14 HT9 403 A 1 
HETATM 7 C C15 HT9 . . . D 4 8.17 7.449 18.722 1 43.86 ? C15 HT9 403 A 1 
HETATM 8 C C16 HT9 . . . D 4 6.967 8.007 19.148 1 40.89 ? C16 HT9 403 A 1 
HETATM 9 C C17 HT9 . . . D 4 6.997 9.42 18.86 1 36.6 ? C17 HT9 403 A 1 
HETATM 10 C C18 HT9 . . . D 4 8.956 8.532 18.168 1 36.94 ? C18 HT9 403 A 1 
HETATM 11 C C19 HT9 . . . D 4 10.236 8.483 17.609 1 39.28 ? C19 HT9 403 A 1 
HETATM 12 C C2 HT9 . . . D 4 12.31 9.34 16.435 1 44.61 ? C2 HT9 403 A 1 
HETATM 13 C C20 HT9 . . . D 4 6.008 10.368 19.125 1 37.82 ? C20 HT9 403 A 1 
HETATM 14 C C21 HT9 . . . D 4 4.69 15.204 19.159 1 48.66 ? C21 HT9 403 A 1 
HETATM 15 C C22 HT9 . . . D 4 4.144 15.783 17.866 1 51.47 ? C22 HT9 403 A 1 
HETATM 16 C C23 HT9 . . . D 4 3.452 17.122 18.029 1 60.08 ? C23 HT9 403 A 1 
HETATM 17 C C24 HT9 . . . D 4 5.822 7.285 19.798 1 36.03 ? C24 HT9 403 A 1 
HETATM 18 C C25 HT9 . . . D 4 14.657 12.15 15.481 1 48.57 ? C25 HT9 403 A 1 
HETATM 19 C C26 HT9 . . . D 4 15.892 12.318 14.616 1 43.42 ? C26 HT9 403 A 1 
HETATM 20 C C27 HT9 . . . D 4 8.563 5.999 18.829 1 39.61 ? C27 HT9 403 A 1 
HETATM 21 C C28 HT9 . . . D 4 9.525 5.48 17.768 1 47.34 ? C28 HT9 403 A 1 
HETATM 22 C C29 HT9 . . . D 4 9.018 5.35 16.335 1 41.99 ? C29 HT9 403 A 1 
HETATM 23 C C3 HT9 . . . D 4 11.017 9.526 17.099 1 45.54 ? C3 HT9 403 A 1 
HETATM 24 C C30 HT9 . . . D 4 9.264 17.243 17.053 1 50.57 ? C30 HT9 403 A 1 
HETATM 25 C C31 HT9 . . . D 4 9.916 18.14 18.102 1 51.42 ? C31 HT9 403 A 1 
HETATM 26 C C32 HT9 . . . D 4 9.886 17.623 19.538 1 64.89 ? C32 HT9 403 A 1 
HETATM 27 C C33 HT9 . . . D 4 11.992 16.023 15.961 1 40.77 ? C33 HT9 403 A 1 
HETATM 28 C C34 HT9 . . . D 4 13.982 10.812 15.258 1 47.21 ? C34 HT9 403 A 1 
HETATM 29 C C35 HT9 . . . D 4 3.567 12.242 19.659 1 41.4 ? C35 HT9 403 A 1 
HETATM 30 C C36 HT9 . . . D 4 13.005 8.029 16.209 1 49.86 ? C36 HT9 403 A 1 
HETATM 31 C C4 HT9 . . . D 4 11.711 11.513 16.518 1 47.61 ? C4 HT9 403 A 1 
HETATM 32 C C5 HT9 . . . D 4 9.664 15.794 17.028 1 49.15 ? C5 HT9 403 A 1 
HETATM 33 C C6 HT9 . . . D 4 10.84 15.263 16.554 1 52.25 ? C6 HT9 403 A 1 
HETATM 34 C C7 HT9 . . . D 4 10.79 13.838 16.72 1 46.94 ? C7 HT9 403 A 1 
HETATM 35 C C8 HT9 . . . D 4 8.858 14.707 17.501 1 44.03 ? C8 HT9 403 A 1 
HETATM 36 C C9 HT9 . . . D 4 11.759 12.888 16.37 1 46.65 ? C9 HT9 403 A 1 
HETATM 37 N N1 HT9 . . . D 4 10.678 10.849 17.118 1 44.28 ? N1 HT9 403 A 1 
HETATM 38 N N2 HT9 . . . D 4 9.572 13.555 17.287 1 50.79 ? N2 HT9 403 A 1 
HETATM 39 N N3 HT9 . . . D 4 7.127 12.424 18.437 1 43.03 ? N3 HT9 403 A 1 
HETATM 40 N N4 HT9 . . . D 4 8.218 9.695 18.278 1 38.06 ? N4 HT9 403 A 1 
HETATM 41 O O1 HT9 . . . D 4 2.265 17.215 17.657 1 58.28 ? O1 HT9 403 A 1 
HETATM 42 O O2 HT9 . . . D 4 4.103 18.066 18.528 1 52.05 ? O2 HT9 403 A 1 
HETATM 43 O O3 HT9 . . . D 4 16.912 11.657 14.903 1 40.93 ? O3 HT9 403 A 1 
HETATM 44 O O4 HT9 . . . D 4 15.825 13.096 13.642 1 50.53 ? O4 HT9 403 A 1 
HETATM 45 O O5 HT9 . . . D 4 7.822 5.6 16.086 1 42.15 ? O5 HT9 403 A 1 
HETATM 46 O O6 HT9 . . . D 4 9.85 4.991 15.478 1 49.77 ? O6 HT9 403 A 1 
HETATM 47 O O7 HT9 . . . D 4 8.788 17.286 20.029 1 65.1 ? O7 HT9 403 A 1 
HETATM 48 O O8 HT9 . . . D 4 10.972 17.574 20.154 1 71.56 ? O8 HT9 403 A 1 
#
_model_server_stats.io_time_ms              80 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           48 
#