data_8OFS
#
_model_server_result.job_id            Qj7wYtFf1bMo70zxjzJVyw 
_model_server_result.datetime_utc      '2024-11-08 09:04:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ofs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    8OFS 
#
_exptl.entry_id    8OFS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              309.27 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-acetyl-beta-neuraminic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.85 
_cell.angle_gamma         90 
_cell.entry_id            8OFS 
_cell.length_a            62.13 
_cell.length_b            62.49 
_cell.length_c            71.8 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OFS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 33 A CYS 215 1_555 B SG CYS 33 B CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 33 A CYS 215 1_555 C SG CYS 33 C CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
disulf ? disulf3 B SG CYS 33 B CYS 215 1_555 C SG CYS 33 C CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C11 H19 N O9' 
_chem_comp.formula_weight    309.27 
_chem_comp.id                SLB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-acetyl-beta-neuraminic acid' 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     'N-acetylneuraminic acid;sialic acid;O-sialic acid;5-N-ACETYL-BETA-D-NEURAMINIC ACID;BETA-SIALIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SLB sing 267 n n 
C1 O1A SLB doub 268 n n 
C1 O1B SLB sing 269 n n 
C2 C3 SLB sing 270 n n 
C2 O2 SLB sing 271 n n 
C2 O6 SLB sing 272 n n 
C3 C4 SLB sing 273 n n 
C3 H32 SLB sing 274 n n 
C3 H31 SLB sing 275 n n 
C4 C5 SLB sing 276 n n 
C4 O4 SLB sing 277 n n 
C4 H4 SLB sing 278 n n 
C5 C6 SLB sing 279 n n 
C5 N5 SLB sing 280 n n 
C5 H5 SLB sing 281 n n 
C6 C7 SLB sing 282 n n 
C6 O6 SLB sing 283 n n 
C6 H6 SLB sing 284 n n 
C7 C8 SLB sing 285 n n 
C7 O7 SLB sing 286 n n 
C7 H7 SLB sing 287 n n 
C8 C9 SLB sing 288 n n 
C8 O8 SLB sing 289 n n 
C8 H8 SLB sing 290 n n 
C9 O9 SLB sing 291 n n 
C9 H92 SLB sing 292 n n 
C9 H91 SLB sing 293 n n 
C10 C11 SLB sing 294 n n 
C10 N5 SLB sing 295 n n 
C10 O10 SLB doub 296 n n 
C11 H111 SLB sing 297 n n 
C11 H113 SLB sing 298 n n 
C11 H112 SLB sing 299 n n 
N5 HN5 SLB sing 300 n n 
O1B HO1B SLB sing 301 n n 
O2 HO2 SLB sing 302 n n 
O4 HO4 SLB sing 303 n n 
O7 HO7 SLB sing 304 n n 
O8 HO8 SLB sing 305 n n 
O9 HO9 SLB sing 306 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
SLB DNeup5Acb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
SLB 'N-acetyl-b-D-neuraminic acid' 'COMMON NAME' GMML 1 
SLB b-D-Neup5Ac 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
SLB Neu5Ac 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8OFS 
_atom_sites.fract_transf_matrix[1][1]    0.016095 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001083 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016003 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013959 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SLB A 1 401 388 SLB SLB . 
E 2 SLB B 1 401 388 SLB SLB . 
F 2 SLB C 1 401 388 SLB SLB . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SLB . . . D 2 22.714 -25.921 31.848 1 126.82 ? C1 SLB 401 A 1 
HETATM 2 C C2 SLB . . . D 2 21.694 -25.697 30.713 1 123.48 ? C2 SLB 401 A 1 
HETATM 3 C C3 SLB . . . D 2 22.244 -24.868 29.561 1 127.62 ? C3 SLB 401 A 1 
HETATM 4 C C4 SLB . . . D 2 21.167 -24.553 28.528 1 127.48 ? C4 SLB 401 A 1 
HETATM 5 C C5 SLB . . . D 2 19.944 -23.983 29.227 1 124.22 ? C5 SLB 401 A 1 
HETATM 6 C C6 SLB . . . D 2 19.468 -24.962 30.297 1 124.02 ? C6 SLB 401 A 1 
HETATM 7 C C7 SLB . . . D 2 18.184 -24.543 31.001 1 131.28 ? C7 SLB 401 A 1 
HETATM 8 C C8 SLB . . . D 2 17.245 -25.763 31.246 1 137.54 ? C8 SLB 401 A 1 
HETATM 9 C C9 SLB . . . D 2 17.859 -26.832 32.133 1 131.81 ? C9 SLB 401 A 1 
HETATM 10 C C10 SLB . . . D 2 18.148 -22.54 28.424 1 138.15 ? C10 SLB 401 A 1 
HETATM 11 C C11 SLB . . . D 2 17.105 -22.311 27.374 1 154.94 ? C11 SLB 401 A 1 
HETATM 12 N N5 SLB . . . D 2 18.876 -23.645 28.301 1 130.44 ? N5 SLB 401 A 1 
HETATM 13 O O1A SLB . . . D 2 23.747 -26.509 31.622 1 135.33 ? O1A SLB 401 A 1 
HETATM 14 O O1B SLB . . . D 2 22.461 -25.542 32.97 1 126.02 ? O1B SLB 401 A 1 
HETATM 15 O O2 SLB . . . D 2 21.301 -26.946 30.214 1 128.18 ? O2 SLB 401 A 1 
HETATM 16 O O4 SLB . . . D 2 21.659 -23.629 27.557 1 135.92 ? O4 SLB 401 A 1 
HETATM 17 O O6 SLB . . . D 2 20.522 -25.075 31.279 1 121.62 ? O6 SLB 401 A 1 
HETATM 18 O O7 SLB . . . D 2 18.489 -23.876 32.228 1 131.18 ? O7 SLB 401 A 1 
HETATM 19 O O8 SLB . . . D 2 16.012 -25.31 31.82 1 151.76 ? O8 SLB 401 A 1 
HETATM 20 O O9 SLB . . . D 2 18.311 -27.95 31.369 1 127.32 ? O9 SLB 401 A 1 
HETATM 21 O O10 SLB . . . D 2 18.302 -21.769 29.365 1 137.74 ? O10 SLB 401 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#