data_8OG2 # _model_server_result.job_id YvvUg_ZgCl_wLQzYMYVfbQ _model_server_result.datetime_utc '2025-03-06 08:13:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8og2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1807}' # _entry.id 8OG2 # _exptl.entry_id 8OG2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OG2 _cell.length_a 86.766 _cell.length_b 145.69 _cell.length_c 155.312 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OG2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 391 A CYS 1444 1_555 A SG CYS 391 A CYS 1444 3_555 ? A ? ? A ? ? ? ? ? ? ? 2.938 ? disulf ? disulf2 A SG CYS 391 A CYS 1444 1_555 A SG CYS 391 A CYS 1444 3_555 ? B ? ? B ? ? ? ? ? ? ? 2.938 ? disulf ? disulf3 A SG CYS 600 A CYS 1710 1_555 A SG CYS 619 A CYS 1729 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? disulf ? disulf4 A SG CYS 610 A CYS 1720 1_555 A SG CYS 613 A CYS 1723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? covale ? covale1 A NH1 ARG 393 A ARG 1446 1_555 G O5A COA . A COA 1806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? metalc ? metalc1 A O TRP 112 A TRP 1165 1_555 H NA NA . A NA 1807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? metalc ? metalc2 A O LEU 113 A LEU 1166 1_555 H NA NA . A NA 1807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc3 A O ASN 115 A ASN 1168 1_555 H NA NA . A NA 1807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc4 A SG CYS 146 A CYS 1199 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc5 A SG CYS 147 A CYS 1200 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc6 A SG CYS 230 A CYS 1283 1_555 D ZN ZN . A ZN 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc7 A SG CYS 233 A CYS 1286 1_555 D ZN ZN . A ZN 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc8 A ND1 HIS 238 A HIS 1291 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc9 A SG CYS 241 A CYS 1294 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc10 A SG CYS 255 A CYS 1308 1_555 D ZN ZN . A ZN 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc11 A SG CYS 258 A CYS 1311 1_555 D ZN ZN . A ZN 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc12 A SG CYS 597 A CYS 1707 1_555 E ZN ZN . A ZN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc13 A SG CYS 619 A CYS 1729 1_555 E ZN ZN . A ZN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc14 A ND1 HIS 630 A HIS 1740 1_555 F ZN ZN . A ZN 1805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc15 H NA NA . A NA 1807 1_555 I O HOH . A HOH 1915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8OG2 _atom_sites.fract_transf_matrix[1][1] 0.011525 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006439 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1801 1 SO4 SO4 . C 3 ZN A 1 1802 1801 ZN ZN . D 3 ZN A 1 1803 1802 ZN ZN . E 3 ZN A 1 1804 1803 ZN ZN . F 3 ZN A 1 1805 1804 ZN ZN . G 4 COA A 1 1806 1901 COA COA . H 5 NA A 1 1807 1 NA NA . I 6 HOH A 1 1901 11 HOH HOH . I 6 HOH A 2 1902 16 HOH HOH . I 6 HOH A 3 1903 17 HOH HOH . I 6 HOH A 4 1904 1 HOH HOH . I 6 HOH A 5 1905 7 HOH HOH . I 6 HOH A 6 1906 12 HOH HOH . I 6 HOH A 7 1907 2 HOH HOH . I 6 HOH A 8 1908 9 HOH HOH . I 6 HOH A 9 1909 3 HOH HOH . I 6 HOH A 10 1910 6 HOH HOH . I 6 HOH A 11 1911 5 HOH HOH . I 6 HOH A 12 1912 8 HOH HOH . I 6 HOH A 13 1913 4 HOH HOH . I 6 HOH A 14 1914 10 HOH HOH . I 6 HOH A 15 1915 13 HOH HOH . I 6 HOH A 16 1916 15 HOH HOH . I 6 HOH A 17 1917 14 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x 17.532 _atom_site.Cartn_y 67.064 _atom_site.Cartn_z 10.26 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1807 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #