data_8OGA
#
_model_server_result.job_id            cHoK3TY0ZJq9Pg5USFCfzA 
_model_server_result.datetime_utc      '2024-11-16 05:25:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8oga 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1405}' 
#
_entry.id    8OGA 
#
_exptl.entry_id    8OGA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8OGA 
_cell.length_a            81.581 
_cell.length_b            81.581 
_cell.length_c            234.805 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OGA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     8OGA 
_atom_sites.fract_transf_matrix[1][1]    0.012258 
_atom_sites.fract_transf_matrix[1][2]    0.007077 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014154 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004259 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO P 1 1401 1401 EDO EDO . 
C 2 EDO P 1 1402 1402 EDO EDO . 
D 2 EDO P 1 1403 1404 EDO EDO . 
E 3 DMS P 1 1404 1405 DMS DMS . 
F 3 DMS P 1 1405 1406 DMS DMS . 
G 4 VLW P 1 1406 1403 VLW LI1 . 
H 5 HOH P 1 1501 42 HOH HOH . 
H 5 HOH P 2 1502 8 HOH HOH . 
H 5 HOH P 3 1503 43 HOH HOH . 
H 5 HOH P 4 1504 17 HOH HOH . 
H 5 HOH P 5 1505 13 HOH HOH . 
H 5 HOH P 6 1506 21 HOH HOH . 
H 5 HOH P 7 1507 60 HOH HOH . 
H 5 HOH P 8 1508 33 HOH HOH . 
H 5 HOH P 9 1509 10 HOH HOH . 
H 5 HOH P 10 1510 20 HOH HOH . 
H 5 HOH P 11 1511 19 HOH HOH . 
H 5 HOH P 12 1512 16 HOH HOH . 
H 5 HOH P 13 1513 30 HOH HOH . 
H 5 HOH P 14 1514 63 HOH HOH . 
H 5 HOH P 15 1515 65 HOH HOH . 
H 5 HOH P 16 1516 11 HOH HOH . 
H 5 HOH P 17 1517 57 HOH HOH . 
H 5 HOH P 18 1518 6 HOH HOH . 
H 5 HOH P 19 1519 22 HOH HOH . 
H 5 HOH P 20 1520 18 HOH HOH . 
H 5 HOH P 21 1521 28 HOH HOH . 
H 5 HOH P 22 1522 40 HOH HOH . 
H 5 HOH P 23 1523 12 HOH HOH . 
H 5 HOH P 24 1524 46 HOH HOH . 
H 5 HOH P 25 1525 32 HOH HOH . 
H 5 HOH P 26 1526 24 HOH HOH . 
H 5 HOH P 27 1527 25 HOH HOH . 
H 5 HOH P 28 1528 9 HOH HOH . 
H 5 HOH P 29 1529 7 HOH HOH . 
H 5 HOH P 30 1530 39 HOH HOH . 
H 5 HOH P 31 1531 36 HOH HOH . 
H 5 HOH P 32 1532 3 HOH HOH . 
H 5 HOH P 33 1533 38 HOH HOH . 
H 5 HOH P 34 1534 27 HOH HOH . 
H 5 HOH P 35 1535 34 HOH HOH . 
H 5 HOH P 36 1536 44 HOH HOH . 
H 5 HOH P 37 1537 26 HOH HOH . 
H 5 HOH P 38 1538 23 HOH HOH . 
H 5 HOH P 39 1539 59 HOH HOH . 
H 5 HOH P 40 1540 47 HOH HOH . 
H 5 HOH P 41 1541 62 HOH HOH . 
H 5 HOH P 42 1542 61 HOH HOH . 
H 5 HOH P 43 1543 14 HOH HOH . 
H 5 HOH P 44 1544 56 HOH HOH . 
H 5 HOH P 45 1545 45 HOH HOH . 
H 5 HOH P 46 1546 5 HOH HOH . 
H 5 HOH P 47 1547 31 HOH HOH . 
H 5 HOH P 48 1548 2 HOH HOH . 
H 5 HOH P 49 1549 52 HOH HOH . 
H 5 HOH P 50 1550 48 HOH HOH . 
H 5 HOH P 51 1551 29 HOH HOH . 
H 5 HOH P 52 1552 49 HOH HOH . 
H 5 HOH P 53 1553 35 HOH HOH . 
H 5 HOH P 54 1554 50 HOH HOH . 
H 5 HOH P 55 1555 1 HOH HOH . 
H 5 HOH P 56 1556 58 HOH HOH . 
H 5 HOH P 57 1557 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . F 3 -25.93 -17.257 28.759 1 92.46 0 S DMS 1405 P 1 
HETATM 2 O O DMS . . . F 3 -26.381 -18.188 27.624 1 74.61 0 O DMS 1405 P 1 
HETATM 3 C C1 DMS . . . F 3 -24.796 -16.09 28.034 1 77.8 0 C1 DMS 1405 P 1 
HETATM 4 C C2 DMS . . . F 3 -24.872 -18.153 29.905 1 82.38 0 C2 DMS 1405 P 1 
HETATM 5 H H11 DMS . . . F 3 -24.306 -15.639 28.735 1 81.91 0 H11 DMS 1405 P 1 
HETATM 6 H H12 DMS . . . F 3 -25.292 -15.44 27.517 1 81.91 0 H12 DMS 1405 P 1 
HETATM 7 H H13 DMS . . . F 3 -24.179 -16.556 27.456 1 81.64 0 H13 DMS 1405 P 1 
HETATM 8 H H21 DMS . . . F 3 -24.499 -17.534 30.548 1 85.29 0 H21 DMS 1405 P 1 
HETATM 9 H H22 DMS . . . F 3 -24.157 -18.581 29.416 1 85.17 0 H22 DMS 1405 P 1 
HETATM 10 H H23 DMS . . . F 3 -25.394 -18.823 30.367 1 85.29 0 H23 DMS 1405 P 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#