data_8OGB
#
_model_server_result.job_id            4uoMQgctQoeUe3EhoXaUqA 
_model_server_result.datetime_utc      '2024-11-16 08:26:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ogb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1503}' 
#
_entry.id    8OGB 
#
_exptl.entry_id    8OGB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8OGB 
_cell.length_a            85.018 
_cell.length_b            85.018 
_cell.length_c            219.36 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OGB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     8OGB 
_atom_sites.fract_transf_matrix[1][1]    0.011762 
_atom_sites.fract_transf_matrix[1][2]    0.006791 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013582 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004559 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 1501 1401 EDO EDO . 
C 3 VN5 A 1 1502 1 VN5 LI1 . 
D 4 DMS A 1 1503 2 DMS DMS . 
E 4 DMS A 1 1504 3 DMS DMS . 
F 5 HOH A 1 1601 128 HOH HOH . 
F 5 HOH A 2 1602 351 HOH HOH . 
F 5 HOH A 3 1603 10 HOH HOH . 
F 5 HOH A 4 1604 192 HOH HOH . 
F 5 HOH A 5 1605 198 HOH HOH . 
F 5 HOH A 6 1606 226 HOH HOH . 
F 5 HOH A 7 1607 55 HOH HOH . 
F 5 HOH A 8 1608 186 HOH HOH . 
F 5 HOH A 9 1609 206 HOH HOH . 
F 5 HOH A 10 1610 67 HOH HOH . 
F 5 HOH A 11 1611 2 HOH HOH . 
F 5 HOH A 12 1612 38 HOH HOH . 
F 5 HOH A 13 1613 77 HOH HOH . 
F 5 HOH A 14 1614 37 HOH HOH . 
F 5 HOH A 15 1615 381 HOH HOH . 
F 5 HOH A 16 1616 54 HOH HOH . 
F 5 HOH A 17 1617 31 HOH HOH . 
F 5 HOH A 18 1618 25 HOH HOH . 
F 5 HOH A 19 1619 263 HOH HOH . 
F 5 HOH A 20 1620 73 HOH HOH . 
F 5 HOH A 21 1621 6 HOH HOH . 
F 5 HOH A 22 1622 342 HOH HOH . 
F 5 HOH A 23 1623 24 HOH HOH . 
F 5 HOH A 24 1624 111 HOH HOH . 
F 5 HOH A 25 1625 149 HOH HOH . 
F 5 HOH A 26 1626 3 HOH HOH . 
F 5 HOH A 27 1627 23 HOH HOH . 
F 5 HOH A 28 1628 74 HOH HOH . 
F 5 HOH A 29 1629 8 HOH HOH . 
F 5 HOH A 30 1630 19 HOH HOH . 
F 5 HOH A 31 1631 9 HOH HOH . 
F 5 HOH A 32 1632 180 HOH HOH . 
F 5 HOH A 33 1633 142 HOH HOH . 
F 5 HOH A 34 1634 63 HOH HOH . 
F 5 HOH A 35 1635 64 HOH HOH . 
F 5 HOH A 36 1636 197 HOH HOH . 
F 5 HOH A 37 1637 181 HOH HOH . 
F 5 HOH A 38 1638 188 HOH HOH . 
F 5 HOH A 39 1639 65 HOH HOH . 
F 5 HOH A 40 1640 1 HOH HOH . 
F 5 HOH A 41 1641 13 HOH HOH . 
F 5 HOH A 42 1642 103 HOH HOH . 
F 5 HOH A 43 1643 53 HOH HOH . 
F 5 HOH A 44 1644 151 HOH HOH . 
F 5 HOH A 45 1645 248 HOH HOH . 
F 5 HOH A 46 1646 102 HOH HOH . 
F 5 HOH A 47 1647 39 HOH HOH . 
F 5 HOH A 48 1648 78 HOH HOH . 
F 5 HOH A 49 1649 81 HOH HOH . 
F 5 HOH A 50 1650 348 HOH HOH . 
F 5 HOH A 51 1651 258 HOH HOH . 
F 5 HOH A 52 1652 47 HOH HOH . 
F 5 HOH A 53 1653 123 HOH HOH . 
F 5 HOH A 54 1654 106 HOH HOH . 
F 5 HOH A 55 1655 269 HOH HOH . 
F 5 HOH A 56 1656 15 HOH HOH . 
F 5 HOH A 57 1657 374 HOH HOH . 
F 5 HOH A 58 1658 217 HOH HOH . 
F 5 HOH A 59 1659 36 HOH HOH . 
F 5 HOH A 60 1660 137 HOH HOH . 
F 5 HOH A 61 1661 20 HOH HOH . 
F 5 HOH A 62 1662 22 HOH HOH . 
F 5 HOH A 63 1663 4 HOH HOH . 
F 5 HOH A 64 1664 12 HOH HOH . 
F 5 HOH A 65 1665 96 HOH HOH . 
F 5 HOH A 66 1666 27 HOH HOH . 
F 5 HOH A 67 1667 184 HOH HOH . 
F 5 HOH A 68 1668 35 HOH HOH . 
F 5 HOH A 69 1669 190 HOH HOH . 
F 5 HOH A 70 1670 16 HOH HOH . 
F 5 HOH A 71 1671 49 HOH HOH . 
F 5 HOH A 72 1672 110 HOH HOH . 
F 5 HOH A 73 1673 231 HOH HOH . 
F 5 HOH A 74 1674 79 HOH HOH . 
F 5 HOH A 75 1675 17 HOH HOH . 
F 5 HOH A 76 1676 200 HOH HOH . 
F 5 HOH A 77 1677 101 HOH HOH . 
F 5 HOH A 78 1678 189 HOH HOH . 
F 5 HOH A 79 1679 7 HOH HOH . 
F 5 HOH A 80 1680 32 HOH HOH . 
F 5 HOH A 81 1681 124 HOH HOH . 
F 5 HOH A 82 1682 33 HOH HOH . 
F 5 HOH A 83 1683 86 HOH HOH . 
F 5 HOH A 84 1684 139 HOH HOH . 
F 5 HOH A 85 1685 56 HOH HOH . 
F 5 HOH A 86 1686 364 HOH HOH . 
F 5 HOH A 87 1687 193 HOH HOH . 
F 5 HOH A 88 1688 28 HOH HOH . 
F 5 HOH A 89 1689 89 HOH HOH . 
F 5 HOH A 90 1690 29 HOH HOH . 
F 5 HOH A 91 1691 255 HOH HOH . 
F 5 HOH A 92 1692 179 HOH HOH . 
F 5 HOH A 93 1693 51 HOH HOH . 
F 5 HOH A 94 1694 167 HOH HOH . 
F 5 HOH A 95 1695 40 HOH HOH . 
F 5 HOH A 96 1696 18 HOH HOH . 
F 5 HOH A 97 1697 52 HOH HOH . 
F 5 HOH A 98 1698 113 HOH HOH . 
F 5 HOH A 99 1699 26 HOH HOH . 
F 5 HOH A 100 1700 141 HOH HOH . 
F 5 HOH A 101 1701 207 HOH HOH . 
F 5 HOH A 102 1702 266 HOH HOH . 
F 5 HOH A 103 1703 48 HOH HOH . 
F 5 HOH A 104 1704 41 HOH HOH . 
F 5 HOH A 105 1705 87 HOH HOH . 
F 5 HOH A 106 1706 14 HOH HOH . 
F 5 HOH A 107 1707 21 HOH HOH . 
F 5 HOH A 108 1708 46 HOH HOH . 
F 5 HOH A 109 1709 114 HOH HOH . 
F 5 HOH A 110 1710 95 HOH HOH . 
F 5 HOH A 111 1711 94 HOH HOH . 
F 5 HOH A 112 1712 371 HOH HOH . 
F 5 HOH A 113 1713 92 HOH HOH . 
F 5 HOH A 114 1714 359 HOH HOH . 
F 5 HOH A 115 1715 163 HOH HOH . 
F 5 HOH A 116 1716 75 HOH HOH . 
F 5 HOH A 117 1717 11 HOH HOH . 
F 5 HOH A 118 1718 93 HOH HOH . 
F 5 HOH A 119 1719 50 HOH HOH . 
F 5 HOH A 120 1720 85 HOH HOH . 
F 5 HOH A 121 1721 43 HOH HOH . 
F 5 HOH A 122 1722 195 HOH HOH . 
F 5 HOH A 123 1723 350 HOH HOH . 
F 5 HOH A 124 1724 76 HOH HOH . 
F 5 HOH A 125 1725 187 HOH HOH . 
F 5 HOH A 126 1726 34 HOH HOH . 
F 5 HOH A 127 1727 386 HOH HOH . 
F 5 HOH A 128 1728 84 HOH HOH . 
F 5 HOH A 129 1729 153 HOH HOH . 
F 5 HOH A 130 1730 82 HOH HOH . 
F 5 HOH A 131 1731 366 HOH HOH . 
F 5 HOH A 132 1732 172 HOH HOH . 
F 5 HOH A 133 1733 30 HOH HOH . 
F 5 HOH A 134 1734 183 HOH HOH . 
F 5 HOH A 135 1735 61 HOH HOH . 
F 5 HOH A 136 1736 57 HOH HOH . 
F 5 HOH A 137 1737 58 HOH HOH . 
F 5 HOH A 138 1738 331 HOH HOH . 
F 5 HOH A 139 1739 196 HOH HOH . 
F 5 HOH A 140 1740 108 HOH HOH . 
F 5 HOH A 141 1741 219 HOH HOH . 
F 5 HOH A 142 1742 347 HOH HOH . 
F 5 HOH A 143 1743 227 HOH HOH . 
F 5 HOH A 144 1744 45 HOH HOH . 
F 5 HOH A 145 1745 5 HOH HOH . 
F 5 HOH A 146 1746 98 HOH HOH . 
F 5 HOH A 147 1747 42 HOH HOH . 
F 5 HOH A 148 1748 145 HOH HOH . 
F 5 HOH A 149 1749 221 HOH HOH . 
F 5 HOH A 150 1750 165 HOH HOH . 
F 5 HOH A 151 1751 122 HOH HOH . 
F 5 HOH A 152 1752 100 HOH HOH . 
F 5 HOH A 153 1753 387 HOH HOH . 
F 5 HOH A 154 1754 388 HOH HOH . 
F 5 HOH A 155 1755 62 HOH HOH . 
F 5 HOH A 156 1756 173 HOH HOH . 
F 5 HOH A 157 1757 90 HOH HOH . 
F 5 HOH A 158 1758 256 HOH HOH . 
F 5 HOH A 159 1759 336 HOH HOH . 
F 5 HOH A 160 1760 274 HOH HOH . 
F 5 HOH A 161 1761 91 HOH HOH . 
F 5 HOH A 162 1762 352 HOH HOH . 
F 5 HOH A 163 1763 238 HOH HOH . 
F 5 HOH A 164 1764 284 HOH HOH . 
F 5 HOH A 165 1765 72 HOH HOH . 
F 5 HOH A 166 1766 140 HOH HOH . 
F 5 HOH A 167 1767 130 HOH HOH . 
F 5 HOH A 168 1768 234 HOH HOH . 
F 5 HOH A 169 1769 104 HOH HOH . 
F 5 HOH A 170 1770 60 HOH HOH . 
F 5 HOH A 171 1771 339 HOH HOH . 
F 5 HOH A 172 1772 80 HOH HOH . 
F 5 HOH A 173 1773 313 HOH HOH . 
F 5 HOH A 174 1774 297 HOH HOH . 
F 5 HOH A 175 1775 66 HOH HOH . 
F 5 HOH A 176 1776 107 HOH HOH . 
F 5 HOH A 177 1777 178 HOH HOH . 
F 5 HOH A 178 1778 133 HOH HOH . 
F 5 HOH A 179 1779 88 HOH HOH . 
F 5 HOH A 180 1780 344 HOH HOH . 
F 5 HOH A 181 1781 210 HOH HOH . 
F 5 HOH A 182 1782 220 HOH HOH . 
F 5 HOH A 183 1783 224 HOH HOH . 
F 5 HOH A 184 1784 166 HOH HOH . 
F 5 HOH A 185 1785 169 HOH HOH . 
F 5 HOH A 186 1786 353 HOH HOH . 
F 5 HOH A 187 1787 370 HOH HOH . 
F 5 HOH A 188 1788 208 HOH HOH . 
F 5 HOH A 189 1789 315 HOH HOH . 
F 5 HOH A 190 1790 270 HOH HOH . 
F 5 HOH A 191 1791 273 HOH HOH . 
F 5 HOH A 192 1792 372 HOH HOH . 
F 5 HOH A 193 1793 254 HOH HOH . 
F 5 HOH A 194 1794 262 HOH HOH . 
F 5 HOH A 195 1795 383 HOH HOH . 
F 5 HOH A 196 1796 325 HOH HOH . 
F 5 HOH A 197 1797 380 HOH HOH . 
F 5 HOH A 198 1798 358 HOH HOH . 
F 5 HOH A 199 1799 134 HOH HOH . 
F 5 HOH A 200 1800 319 HOH HOH . 
F 5 HOH A 201 1801 265 HOH HOH . 
F 5 HOH A 202 1802 185 HOH HOH . 
F 5 HOH A 203 1803 307 HOH HOH . 
F 5 HOH A 204 1804 213 HOH HOH . 
F 5 HOH A 205 1805 240 HOH HOH . 
F 5 HOH A 206 1806 131 HOH HOH . 
F 5 HOH A 207 1807 360 HOH HOH . 
F 5 HOH A 208 1808 323 HOH HOH . 
F 5 HOH A 209 1809 355 HOH HOH . 
F 5 HOH A 210 1810 202 HOH HOH . 
F 5 HOH A 211 1811 281 HOH HOH . 
F 5 HOH A 212 1812 168 HOH HOH . 
F 5 HOH A 213 1813 368 HOH HOH . 
F 5 HOH A 214 1814 391 HOH HOH . 
F 5 HOH A 215 1815 170 HOH HOH . 
F 5 HOH A 216 1816 199 HOH HOH . 
F 5 HOH A 217 1817 246 HOH HOH . 
F 5 HOH A 218 1818 68 HOH HOH . 
F 5 HOH A 219 1819 260 HOH HOH . 
F 5 HOH A 220 1820 117 HOH HOH . 
F 5 HOH A 221 1821 317 HOH HOH . 
F 5 HOH A 222 1822 143 HOH HOH . 
F 5 HOH A 223 1823 363 HOH HOH . 
F 5 HOH A 224 1824 264 HOH HOH . 
F 5 HOH A 225 1825 232 HOH HOH . 
F 5 HOH A 226 1826 127 HOH HOH . 
F 5 HOH A 227 1827 44 HOH HOH . 
F 5 HOH A 228 1828 390 HOH HOH . 
F 5 HOH A 229 1829 228 HOH HOH . 
F 5 HOH A 230 1830 164 HOH HOH . 
F 5 HOH A 231 1831 268 HOH HOH . 
F 5 HOH A 232 1832 212 HOH HOH . 
F 5 HOH A 233 1833 203 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . D 4 -40.029 -39.087 0.643 1 32.09 0 S DMS 1503 A 1 
HETATM 2 O O DMS . . . D 4 -40.227 -38.146 1.822 1 33.94 0 O DMS 1503 A 1 
HETATM 3 C C1 DMS . . . D 4 -38.721 -40.149 1.072 1 29.4 0 C1 DMS 1503 A 1 
HETATM 4 C C2 DMS . . . D 4 -41.335 -40.293 0.891 1 30.94 0 C2 DMS 1503 A 1 
HETATM 5 H H11 DMS . . . D 4 -38.353 -40.533 0.266 1 29.99 0 H11 DMS 1503 A 1 
HETATM 6 H H12 DMS . . . D 4 -39.055 -40.852 1.641 1 30.08 0 H12 DMS 1503 A 1 
HETATM 7 H H13 DMS . . . D 4 -38.047 -39.647 1.541 1 29.9 0 H13 DMS 1503 A 1 
HETATM 8 H H21 DMS . . . D 4 -41.239 -41.007 0.247 1 31.29 0 H21 DMS 1503 A 1 
HETATM 9 H H22 DMS . . . D 4 -42.194 -39.865 0.773 1 31.29 0 H22 DMS 1503 A 1 
HETATM 10 H H23 DMS . . . D 4 -41.274 -40.654 1.786 1 31.28 0 H23 DMS 1503 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#