data_8OGC # _model_server_result.job_id YoL4UVAsofbYaYAa-VYztg _model_server_result.datetime_utc '2024-11-16 07:37:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ogc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 8OGC # _exptl.entry_id 8OGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8OGC _cell.length_a 81.74 _cell.length_b 81.74 _cell.length_c 234.101 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OGC _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 50 A SER 1084 1_555 C MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc2 A O PHE 89 A PHE 1123 1_555 C MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc3 C MG MG . A MG 1502 1_555 I O HOH . A HOH 1668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc4 C MG MG . A MG 1502 1_555 I O HOH . A HOH 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 89 n n S C1 DMS sing 90 n n S C2 DMS sing 91 n n C1 H11 DMS sing 92 n n C1 H12 DMS sing 93 n n C1 H13 DMS sing 94 n n C2 H21 DMS sing 95 n n C2 H22 DMS sing 96 n n C2 H23 DMS sing 97 n n # _atom_sites.entry_id 8OGC _atom_sites.fract_transf_matrix[1][1] 0.012234 _atom_sites.fract_transf_matrix[1][2] 0.007063 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004272 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 1501 1401 DMS DMS . C 3 MG A 1 1502 1 MG MG . D 4 ACT A 1 1503 2 ACT ACT . E 4 ACT A 1 1504 3 ACT ACT . F 5 EDO A 1 1505 11 EDO EDO . G 6 VMZ A 1 1506 1 VMZ LI1 . H 6 VMZ A 1 1507 2 VMZ LI1 . I 7 HOH A 1 1601 147 HOH HOH . I 7 HOH A 2 1602 211 HOH HOH . I 7 HOH A 3 1603 241 HOH HOH . I 7 HOH A 4 1604 176 HOH HOH . I 7 HOH A 5 1605 164 HOH HOH . I 7 HOH A 6 1606 207 HOH HOH . I 7 HOH A 7 1607 88 HOH HOH . I 7 HOH A 8 1608 63 HOH HOH . I 7 HOH A 9 1609 178 HOH HOH . I 7 HOH A 10 1610 227 HOH HOH . I 7 HOH A 11 1611 191 HOH HOH . I 7 HOH A 12 1612 67 HOH HOH . I 7 HOH A 13 1613 161 HOH HOH . I 7 HOH A 14 1614 87 HOH HOH . I 7 HOH A 15 1615 237 HOH HOH . I 7 HOH A 16 1616 10 HOH HOH . I 7 HOH A 17 1617 39 HOH HOH . I 7 HOH A 18 1618 106 HOH HOH . I 7 HOH A 19 1619 158 HOH HOH . I 7 HOH A 20 1620 168 HOH HOH . I 7 HOH A 21 1621 175 HOH HOH . I 7 HOH A 22 1622 28 HOH HOH . I 7 HOH A 23 1623 83 HOH HOH . I 7 HOH A 24 1624 19 HOH HOH . I 7 HOH A 25 1625 128 HOH HOH . I 7 HOH A 26 1626 210 HOH HOH . I 7 HOH A 27 1627 1 HOH HOH . I 7 HOH A 28 1628 4 HOH HOH . I 7 HOH A 29 1629 198 HOH HOH . I 7 HOH A 30 1630 78 HOH HOH . I 7 HOH A 31 1631 31 HOH HOH . I 7 HOH A 32 1632 94 HOH HOH . I 7 HOH A 33 1633 14 HOH HOH . I 7 HOH A 34 1634 142 HOH HOH . I 7 HOH A 35 1635 16 HOH HOH . I 7 HOH A 36 1636 185 HOH HOH . I 7 HOH A 37 1637 69 HOH HOH . I 7 HOH A 38 1638 263 HOH HOH . I 7 HOH A 39 1639 2 HOH HOH . I 7 HOH A 40 1640 38 HOH HOH . I 7 HOH A 41 1641 264 HOH HOH . I 7 HOH A 42 1642 65 HOH HOH . I 7 HOH A 43 1643 3 HOH HOH . I 7 HOH A 44 1644 152 HOH HOH . I 7 HOH A 45 1645 64 HOH HOH . I 7 HOH A 46 1646 206 HOH HOH . I 7 HOH A 47 1647 258 HOH HOH . I 7 HOH A 48 1648 246 HOH HOH . I 7 HOH A 49 1649 247 HOH HOH . I 7 HOH A 50 1650 135 HOH HOH . I 7 HOH A 51 1651 157 HOH HOH . I 7 HOH A 52 1652 221 HOH HOH . I 7 HOH A 53 1653 192 HOH HOH . I 7 HOH A 54 1654 151 HOH HOH . I 7 HOH A 55 1655 58 HOH HOH . I 7 HOH A 56 1656 122 HOH HOH . I 7 HOH A 57 1657 32 HOH HOH . I 7 HOH A 58 1658 20 HOH HOH . I 7 HOH A 59 1659 271 HOH HOH . I 7 HOH A 60 1660 213 HOH HOH . I 7 HOH A 61 1661 146 HOH HOH . I 7 HOH A 62 1662 138 HOH HOH . I 7 HOH A 63 1663 249 HOH HOH . I 7 HOH A 64 1664 209 HOH HOH . I 7 HOH A 65 1665 8 HOH HOH . I 7 HOH A 66 1666 129 HOH HOH . I 7 HOH A 67 1667 225 HOH HOH . I 7 HOH A 68 1668 228 HOH HOH . I 7 HOH A 69 1669 82 HOH HOH . I 7 HOH A 70 1670 126 HOH HOH . I 7 HOH A 71 1671 174 HOH HOH . I 7 HOH A 72 1672 72 HOH HOH . I 7 HOH A 73 1673 7 HOH HOH . I 7 HOH A 74 1674 30 HOH HOH . I 7 HOH A 75 1675 17 HOH HOH . I 7 HOH A 76 1676 98 HOH HOH . I 7 HOH A 77 1677 248 HOH HOH . I 7 HOH A 78 1678 150 HOH HOH . I 7 HOH A 79 1679 232 HOH HOH . I 7 HOH A 80 1680 137 HOH HOH . I 7 HOH A 81 1681 202 HOH HOH . I 7 HOH A 82 1682 120 HOH HOH . I 7 HOH A 83 1683 25 HOH HOH . I 7 HOH A 84 1684 167 HOH HOH . I 7 HOH A 85 1685 275 HOH HOH . I 7 HOH A 86 1686 45 HOH HOH . I 7 HOH A 87 1687 239 HOH HOH . I 7 HOH A 88 1688 68 HOH HOH . I 7 HOH A 89 1689 27 HOH HOH . I 7 HOH A 90 1690 110 HOH HOH . I 7 HOH A 91 1691 133 HOH HOH . I 7 HOH A 92 1692 171 HOH HOH . I 7 HOH A 93 1693 130 HOH HOH . I 7 HOH A 94 1694 259 HOH HOH . I 7 HOH A 95 1695 71 HOH HOH . I 7 HOH A 96 1696 79 HOH HOH . I 7 HOH A 97 1697 238 HOH HOH . I 7 HOH A 98 1698 5 HOH HOH . I 7 HOH A 99 1699 26 HOH HOH . I 7 HOH A 100 1700 194 HOH HOH . I 7 HOH A 101 1701 22 HOH HOH . I 7 HOH A 102 1702 21 HOH HOH . I 7 HOH A 103 1703 229 HOH HOH . I 7 HOH A 104 1704 18 HOH HOH . I 7 HOH A 105 1705 242 HOH HOH . I 7 HOH A 106 1706 36 HOH HOH . I 7 HOH A 107 1707 116 HOH HOH . I 7 HOH A 108 1708 6 HOH HOH . I 7 HOH A 109 1709 134 HOH HOH . I 7 HOH A 110 1710 254 HOH HOH . I 7 HOH A 111 1711 140 HOH HOH . I 7 HOH A 112 1712 156 HOH HOH . I 7 HOH A 113 1713 215 HOH HOH . I 7 HOH A 114 1714 92 HOH HOH . I 7 HOH A 115 1715 166 HOH HOH . I 7 HOH A 116 1716 54 HOH HOH . I 7 HOH A 117 1717 62 HOH HOH . I 7 HOH A 118 1718 205 HOH HOH . I 7 HOH A 119 1719 97 HOH HOH . I 7 HOH A 120 1720 141 HOH HOH . I 7 HOH A 121 1721 37 HOH HOH . I 7 HOH A 122 1722 66 HOH HOH . I 7 HOH A 123 1723 73 HOH HOH . I 7 HOH A 124 1724 34 HOH HOH . I 7 HOH A 125 1725 46 HOH HOH . I 7 HOH A 126 1726 40 HOH HOH . I 7 HOH A 127 1727 235 HOH HOH . I 7 HOH A 128 1728 47 HOH HOH . I 7 HOH A 129 1729 163 HOH HOH . I 7 HOH A 130 1730 35 HOH HOH . I 7 HOH A 131 1731 52 HOH HOH . I 7 HOH A 132 1732 13 HOH HOH . I 7 HOH A 133 1733 96 HOH HOH . I 7 HOH A 134 1734 144 HOH HOH . I 7 HOH A 135 1735 170 HOH HOH . I 7 HOH A 136 1736 108 HOH HOH . I 7 HOH A 137 1737 179 HOH HOH . I 7 HOH A 138 1738 139 HOH HOH . I 7 HOH A 139 1739 274 HOH HOH . I 7 HOH A 140 1740 55 HOH HOH . I 7 HOH A 141 1741 59 HOH HOH . I 7 HOH A 142 1742 53 HOH HOH . I 7 HOH A 143 1743 80 HOH HOH . I 7 HOH A 144 1744 183 HOH HOH . I 7 HOH A 145 1745 153 HOH HOH . I 7 HOH A 146 1746 43 HOH HOH . I 7 HOH A 147 1747 244 HOH HOH . I 7 HOH A 148 1748 159 HOH HOH . I 7 HOH A 149 1749 216 HOH HOH . I 7 HOH A 150 1750 11 HOH HOH . I 7 HOH A 151 1751 256 HOH HOH . I 7 HOH A 152 1752 51 HOH HOH . I 7 HOH A 153 1753 190 HOH HOH . I 7 HOH A 154 1754 257 HOH HOH . I 7 HOH A 155 1755 266 HOH HOH . I 7 HOH A 156 1756 33 HOH HOH . I 7 HOH A 157 1757 226 HOH HOH . I 7 HOH A 158 1758 74 HOH HOH . I 7 HOH A 159 1759 70 HOH HOH . I 7 HOH A 160 1760 270 HOH HOH . I 7 HOH A 161 1761 196 HOH HOH . I 7 HOH A 162 1762 260 HOH HOH . I 7 HOH A 163 1763 44 HOH HOH . I 7 HOH A 164 1764 184 HOH HOH . I 7 HOH A 165 1765 245 HOH HOH . I 7 HOH A 166 1766 272 HOH HOH . I 7 HOH A 167 1767 101 HOH HOH . I 7 HOH A 168 1768 250 HOH HOH . I 7 HOH A 169 1769 200 HOH HOH . I 7 HOH A 170 1770 136 HOH HOH . I 7 HOH A 171 1771 42 HOH HOH . I 7 HOH A 172 1772 29 HOH HOH . I 7 HOH A 173 1773 114 HOH HOH . I 7 HOH A 174 1774 148 HOH HOH . I 7 HOH A 175 1775 251 HOH HOH . I 7 HOH A 176 1776 252 HOH HOH . I 7 HOH A 177 1777 269 HOH HOH . I 7 HOH A 178 1778 268 HOH HOH . I 7 HOH A 179 1779 243 HOH HOH . I 7 HOH A 180 1780 236 HOH HOH . I 7 HOH A 181 1781 240 HOH HOH . I 7 HOH A 182 1782 143 HOH HOH . I 7 HOH A 183 1783 273 HOH HOH . I 7 HOH A 184 1784 233 HOH HOH . I 7 HOH A 185 1785 231 HOH HOH . I 7 HOH A 186 1786 41 HOH HOH . I 7 HOH A 187 1787 262 HOH HOH . I 7 HOH A 188 1788 204 HOH HOH . I 7 HOH A 189 1789 180 HOH HOH . I 7 HOH A 190 1790 267 HOH HOH . I 7 HOH A 191 1791 261 HOH HOH . I 7 HOH A 192 1792 145 HOH HOH . I 7 HOH A 193 1793 224 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . B 2 -14.86 -32.411 5.158 1 78.48 0 S DMS 1501 A 1 HETATM 2 O O DMS . . . B 2 -15.822 -32.353 6.413 1 69.19 0 O DMS 1501 A 1 HETATM 3 C C1 DMS . . . B 2 -15.86 -31.905 3.772 1 75.57 0 C1 DMS 1501 A 1 HETATM 4 C C2 DMS . . . B 2 -14.527 -34.117 4.664 1 72.86 0 C2 DMS 1501 A 1 HETATM 5 H H11 DMS . . . B 2 -15.368 -31.27 3.235 1 76.35 0 H11 DMS 1501 A 1 HETATM 6 H H12 DMS . . . B 2 -16.672 -31.49 4.097 1 76.3 0 H12 DMS 1501 A 1 HETATM 7 H H13 DMS . . . B 2 -16.086 -32.678 3.238 1 76.65 0 H13 DMS 1501 A 1 HETATM 8 H H21 DMS . . . B 2 -14.138 -34.126 3.779 1 74.56 0 H21 DMS 1501 A 1 HETATM 9 H H22 DMS . . . B 2 -15.355 -34.617 4.656 1 74.29 0 H22 DMS 1501 A 1 HETATM 10 H H23 DMS . . . B 2 -13.914 -34.521 5.292 1 74 0 H23 DMS 1501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #