data_8OGO
#
_model_server_result.job_id            a7EPgJdlGrtLa7XPxDyuYw 
_model_server_result.datetime_utc      '2024-11-06 19:40:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ogo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    8OGO 
#
_exptl.entry_id    8OGO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              128.129 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(propan-2-yl)-1,2,4-oxadiazol-5(4H)-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.61 
_cell.angle_gamma         90 
_cell.entry_id            8OGO 
_cell.length_a            119 
_cell.length_b            38.95 
_cell.length_c            68.19 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OGO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D MG MG . B MG 301 1_555 F O HOH . B HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc2 D MG MG . B MG 301 1_555 F O HOH . B HOH 464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc3 D MG MG . B MG 301 1_555 F O HOH . B HOH 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc4 D MG MG . B MG 301 1_555 F O HOH . B HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc5 D MG MG . B MG 301 1_555 F O HOH . B HOH 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc6 D MG MG . B MG 301 1_555 F O HOH . B HOH 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
#
_chem_comp.formula           'C5 H8 N2 O2' 
_chem_comp.formula_weight    128.129 
_chem_comp.id                TJ1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(propan-2-yl)-1,2,4-oxadiazol-5(4H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 O TJ1 sing 306 n n 
N1 C3 TJ1 doub 307 n n 
O C4 TJ1 sing 308 n n 
C3 C1 TJ1 sing 309 n n 
C3 N TJ1 sing 310 n n 
C1 C2 TJ1 sing 311 n n 
C1 C TJ1 sing 312 n n 
C4 O1 TJ1 doub 313 n n 
C4 N TJ1 sing 314 n n 
N H1 TJ1 sing 315 n n 
C1 H2 TJ1 sing 316 n n 
C2 H3 TJ1 sing 317 n n 
C2 H4 TJ1 sing 318 n n 
C2 H5 TJ1 sing 319 n n 
C H6 TJ1 sing 320 n n 
C H7 TJ1 sing 321 n n 
C H8 TJ1 sing 322 n n 
#
_atom_sites.entry_id                     8OGO 
_atom_sites.fract_transf_matrix[1][1]    0.008403 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000825 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025674 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014735 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TJ1 A 1 301 301 TJ1 LIG . 
D 3 MG B 1 301 1 MG MG . 
E 4 HOH A 1 401 116 HOH HOH . 
E 4 HOH A 2 402 80 HOH HOH . 
E 4 HOH A 3 403 47 HOH HOH . 
E 4 HOH A 4 404 81 HOH HOH . 
E 4 HOH A 5 405 30 HOH HOH . 
E 4 HOH A 6 406 124 HOH HOH . 
E 4 HOH A 7 407 128 HOH HOH . 
E 4 HOH A 8 408 102 HOH HOH . 
E 4 HOH A 9 409 126 HOH HOH . 
E 4 HOH A 10 410 31 HOH HOH . 
E 4 HOH A 11 411 54 HOH HOH . 
E 4 HOH A 12 412 25 HOH HOH . 
E 4 HOH A 13 413 96 HOH HOH . 
E 4 HOH A 14 414 9 HOH HOH . 
E 4 HOH A 15 415 19 HOH HOH . 
E 4 HOH A 16 416 4 HOH HOH . 
E 4 HOH A 17 417 38 HOH HOH . 
E 4 HOH A 18 418 139 HOH HOH . 
E 4 HOH A 19 419 10 HOH HOH . 
E 4 HOH A 20 420 84 HOH HOH . 
E 4 HOH A 21 421 6 HOH HOH . 
E 4 HOH A 22 422 48 HOH HOH . 
E 4 HOH A 23 423 89 HOH HOH . 
E 4 HOH A 24 424 2 HOH HOH . 
E 4 HOH A 25 425 73 HOH HOH . 
E 4 HOH A 26 426 87 HOH HOH . 
E 4 HOH A 27 427 40 HOH HOH . 
E 4 HOH A 28 428 24 HOH HOH . 
E 4 HOH A 29 429 52 HOH HOH . 
E 4 HOH A 30 430 71 HOH HOH . 
E 4 HOH A 31 431 35 HOH HOH . 
E 4 HOH A 32 432 65 HOH HOH . 
E 4 HOH A 33 433 135 HOH HOH . 
E 4 HOH A 34 434 12 HOH HOH . 
E 4 HOH A 35 435 97 HOH HOH . 
E 4 HOH A 36 436 132 HOH HOH . 
E 4 HOH A 37 437 46 HOH HOH . 
E 4 HOH A 38 438 22 HOH HOH . 
E 4 HOH A 39 439 106 HOH HOH . 
E 4 HOH A 40 440 115 HOH HOH . 
E 4 HOH A 41 441 70 HOH HOH . 
E 4 HOH A 42 442 67 HOH HOH . 
E 4 HOH A 43 443 100 HOH HOH . 
E 4 HOH A 44 444 45 HOH HOH . 
E 4 HOH A 45 445 37 HOH HOH . 
E 4 HOH A 46 446 107 HOH HOH . 
E 4 HOH A 47 447 98 HOH HOH . 
E 4 HOH A 48 448 39 HOH HOH . 
E 4 HOH A 49 449 83 HOH HOH . 
E 4 HOH A 50 450 64 HOH HOH . 
E 4 HOH A 51 451 113 HOH HOH . 
E 4 HOH A 52 452 101 HOH HOH . 
E 4 HOH A 53 453 55 HOH HOH . 
E 4 HOH A 54 454 110 HOH HOH . 
E 4 HOH A 55 455 114 HOH HOH . 
E 4 HOH A 56 456 103 HOH HOH . 
E 4 HOH A 57 457 86 HOH HOH . 
E 4 HOH A 58 458 121 HOH HOH . 
E 4 HOH A 59 459 140 HOH HOH . 
E 4 HOH A 60 460 90 HOH HOH . 
F 4 HOH B 1 401 134 HOH HOH . 
F 4 HOH B 2 402 123 HOH HOH . 
F 4 HOH B 3 403 93 HOH HOH . 
F 4 HOH B 4 404 130 HOH HOH . 
F 4 HOH B 5 405 58 HOH HOH . 
F 4 HOH B 6 406 118 HOH HOH . 
F 4 HOH B 7 407 142 HOH HOH . 
F 4 HOH B 8 408 59 HOH HOH . 
F 4 HOH B 9 409 49 HOH HOH . 
F 4 HOH B 10 410 72 HOH HOH . 
F 4 HOH B 11 411 29 HOH HOH . 
F 4 HOH B 12 412 21 HOH HOH . 
F 4 HOH B 13 413 133 HOH HOH . 
F 4 HOH B 14 414 138 HOH HOH . 
F 4 HOH B 15 415 92 HOH HOH . 
F 4 HOH B 16 416 11 HOH HOH . 
F 4 HOH B 17 417 76 HOH HOH . 
F 4 HOH B 18 418 34 HOH HOH . 
F 4 HOH B 19 419 7 HOH HOH . 
F 4 HOH B 20 420 8 HOH HOH . 
F 4 HOH B 21 421 13 HOH HOH . 
F 4 HOH B 22 422 17 HOH HOH . 
F 4 HOH B 23 423 18 HOH HOH . 
F 4 HOH B 24 424 15 HOH HOH . 
F 4 HOH B 25 425 122 HOH HOH . 
F 4 HOH B 26 426 20 HOH HOH . 
F 4 HOH B 27 427 74 HOH HOH . 
F 4 HOH B 28 428 32 HOH HOH . 
F 4 HOH B 29 429 51 HOH HOH . 
F 4 HOH B 30 430 53 HOH HOH . 
F 4 HOH B 31 431 95 HOH HOH . 
F 4 HOH B 32 432 79 HOH HOH . 
F 4 HOH B 33 433 104 HOH HOH . 
F 4 HOH B 34 434 77 HOH HOH . 
F 4 HOH B 35 435 75 HOH HOH . 
F 4 HOH B 36 436 43 HOH HOH . 
F 4 HOH B 37 437 61 HOH HOH . 
F 4 HOH B 38 438 27 HOH HOH . 
F 4 HOH B 39 439 44 HOH HOH . 
F 4 HOH B 40 440 62 HOH HOH . 
F 4 HOH B 41 441 141 HOH HOH . 
F 4 HOH B 42 442 137 HOH HOH . 
F 4 HOH B 43 443 131 HOH HOH . 
F 4 HOH B 44 444 94 HOH HOH . 
F 4 HOH B 45 445 60 HOH HOH . 
F 4 HOH B 46 446 50 HOH HOH . 
F 4 HOH B 47 447 85 HOH HOH . 
F 4 HOH B 48 448 91 HOH HOH . 
F 4 HOH B 49 449 117 HOH HOH . 
F 4 HOH B 50 450 69 HOH HOH . 
F 4 HOH B 51 451 57 HOH HOH . 
F 4 HOH B 52 452 41 HOH HOH . 
F 4 HOH B 53 453 63 HOH HOH . 
F 4 HOH B 54 454 82 HOH HOH . 
F 4 HOH B 55 455 136 HOH HOH . 
F 4 HOH B 56 456 56 HOH HOH . 
F 4 HOH B 57 457 66 HOH HOH . 
F 4 HOH B 58 458 127 HOH HOH . 
F 4 HOH B 59 459 14 HOH HOH . 
F 4 HOH B 60 460 119 HOH HOH . 
F 4 HOH B 61 461 5 HOH HOH . 
F 4 HOH B 62 462 112 HOH HOH . 
F 4 HOH B 63 463 109 HOH HOH . 
F 4 HOH B 64 464 28 HOH HOH . 
F 4 HOH B 65 465 129 HOH HOH . 
F 4 HOH B 66 466 99 HOH HOH . 
F 4 HOH B 67 467 33 HOH HOH . 
F 4 HOH B 68 468 125 HOH HOH . 
F 4 HOH B 69 469 105 HOH HOH . 
F 4 HOH B 70 470 68 HOH HOH . 
F 4 HOH B 71 471 23 HOH HOH . 
F 4 HOH B 72 472 16 HOH HOH . 
F 4 HOH B 73 473 26 HOH HOH . 
F 4 HOH B 74 474 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 TJ1 . B . C 2 20.468 -12.594 24.182 0.58 26.91 ? C4 TJ1 301 A 1 
HETATM 2 N N1 TJ1 . B . C 2 21.052 -13.787 22.436 0.58 26.68 ? N1 TJ1 301 A 1 
HETATM 3 O O1 TJ1 . B . C 2 19.805 -11.729 25.054 0.58 28.5 ? O1 TJ1 301 A 1 
HETATM 4 N N TJ1 . B . C 2 21.609 -13.203 24.44 0.58 27.6 ? N TJ1 301 A 1 
HETATM 5 O O TJ1 . B . C 2 20.11 -12.942 22.934 0.58 26.53 ? O TJ1 301 A 1 
HETATM 6 C C3 TJ1 . B . C 2 21.949 -13.931 23.398 0.58 26.27 ? C3 TJ1 301 A 1 
HETATM 7 C C1 TJ1 . B . C 2 23.212 -14.775 23.306 0.58 25.31 ? C1 TJ1 301 A 1 
HETATM 8 C C2 TJ1 . B . C 2 23.028 -16.103 24.029 0.58 24.37 ? C2 TJ1 301 A 1 
HETATM 9 C C TJ1 . B . C 2 23.6 -14.913 21.832 0.58 26.77 ? C TJ1 301 A 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           9 
#