data_8OGT
#
_model_server_result.job_id            Ic_2QaXllUSxpozpwWDsRw 
_model_server_result.datetime_utc      '2024-11-28 07:01:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ogt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    8OGT 
#
_exptl.entry_id    8OGT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              140.143 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-hydrazinyl-4-methoxypyrimidine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.54 
_cell.angle_gamma         90 
_cell.entry_id            8OGT 
_cell.length_a            118.91 
_cell.length_b            39.26 
_cell.length_c            68.57 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OGT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D MG MG . B MG 301 1_555 F O HOH . B HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc2 D MG MG . B MG 301 1_555 F O HOH . B HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc3 D MG MG . B MG 301 1_555 F O HOH . B HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc4 D MG MG . B MG 301 1_555 F O HOH . B HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc5 D MG MG . B MG 301 1_555 F O HOH . B HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc6 D MG MG . B MG 301 1_555 F O HOH . B HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
#
_chem_comp.formula           'C5 H8 N4 O' 
_chem_comp.formula_weight    140.143 
_chem_comp.id                R8S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-hydrazinyl-4-methoxypyrimidine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 N2 R8S sing 277 n n 
N2 C4 R8S sing 278 n n 
C4 N1 R8S doub 279 n y 
C4 N R8S sing 280 n y 
N1 C1 R8S sing 281 n y 
N C3 R8S doub 282 n y 
C O R8S sing 283 n n 
C1 O R8S sing 284 n n 
C1 C2 R8S doub 285 n y 
C3 C2 R8S sing 286 n y 
N2 H1 R8S sing 287 n n 
N3 H2 R8S sing 288 n n 
N3 H3 R8S sing 289 n n 
C3 H4 R8S sing 290 n n 
C2 H5 R8S sing 291 n n 
C H6 R8S sing 292 n n 
C H7 R8S sing 293 n n 
C H8 R8S sing 294 n n 
#
_atom_sites.entry_id                     8OGT 
_atom_sites.fract_transf_matrix[1][1]    0.00841 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000816 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025471 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014652 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 R8S A 1 301 301 R8S LIG . 
D 3 MG B 1 301 1 MG MG . 
E 4 HOH A 1 401 85 HOH HOH . 
E 4 HOH A 2 402 96 HOH HOH . 
E 4 HOH A 3 403 87 HOH HOH . 
E 4 HOH A 4 404 109 HOH HOH . 
E 4 HOH A 5 405 73 HOH HOH . 
E 4 HOH A 6 406 89 HOH HOH . 
E 4 HOH A 7 407 13 HOH HOH . 
E 4 HOH A 8 408 32 HOH HOH . 
E 4 HOH A 9 409 62 HOH HOH . 
E 4 HOH A 10 410 42 HOH HOH . 
E 4 HOH A 11 411 9 HOH HOH . 
E 4 HOH A 12 412 12 HOH HOH . 
E 4 HOH A 13 413 43 HOH HOH . 
E 4 HOH A 14 414 17 HOH HOH . 
E 4 HOH A 15 415 83 HOH HOH . 
E 4 HOH A 16 416 63 HOH HOH . 
E 4 HOH A 17 417 59 HOH HOH . 
E 4 HOH A 18 418 4 HOH HOH . 
E 4 HOH A 19 419 6 HOH HOH . 
E 4 HOH A 20 420 2 HOH HOH . 
E 4 HOH A 21 421 57 HOH HOH . 
E 4 HOH A 22 422 68 HOH HOH . 
E 4 HOH A 23 423 65 HOH HOH . 
E 4 HOH A 24 424 11 HOH HOH . 
E 4 HOH A 25 425 24 HOH HOH . 
E 4 HOH A 26 426 34 HOH HOH . 
E 4 HOH A 27 427 8 HOH HOH . 
E 4 HOH A 28 428 18 HOH HOH . 
E 4 HOH A 29 429 105 HOH HOH . 
E 4 HOH A 30 430 72 HOH HOH . 
E 4 HOH A 31 431 60 HOH HOH . 
E 4 HOH A 32 432 93 HOH HOH . 
E 4 HOH A 33 433 30 HOH HOH . 
E 4 HOH A 34 434 90 HOH HOH . 
E 4 HOH A 35 435 55 HOH HOH . 
E 4 HOH A 36 436 48 HOH HOH . 
E 4 HOH A 37 437 94 HOH HOH . 
E 4 HOH A 38 438 37 HOH HOH . 
E 4 HOH A 39 439 64 HOH HOH . 
E 4 HOH A 40 440 45 HOH HOH . 
E 4 HOH A 41 441 28 HOH HOH . 
E 4 HOH A 42 442 50 HOH HOH . 
E 4 HOH A 43 443 95 HOH HOH . 
E 4 HOH A 44 444 26 HOH HOH . 
E 4 HOH A 45 445 39 HOH HOH . 
E 4 HOH A 46 446 78 HOH HOH . 
E 4 HOH A 47 447 104 HOH HOH . 
E 4 HOH A 48 448 51 HOH HOH . 
E 4 HOH A 49 449 100 HOH HOH . 
F 4 HOH B 1 401 108 HOH HOH . 
F 4 HOH B 2 402 106 HOH HOH . 
F 4 HOH B 3 403 84 HOH HOH . 
F 4 HOH B 4 404 41 HOH HOH . 
F 4 HOH B 5 405 71 HOH HOH . 
F 4 HOH B 6 406 92 HOH HOH . 
F 4 HOH B 7 407 20 HOH HOH . 
F 4 HOH B 8 408 19 HOH HOH . 
F 4 HOH B 9 409 40 HOH HOH . 
F 4 HOH B 10 410 56 HOH HOH . 
F 4 HOH B 11 411 44 HOH HOH . 
F 4 HOH B 12 412 33 HOH HOH . 
F 4 HOH B 13 413 86 HOH HOH . 
F 4 HOH B 14 414 5 HOH HOH . 
F 4 HOH B 15 415 49 HOH HOH . 
F 4 HOH B 16 416 54 HOH HOH . 
F 4 HOH B 17 417 91 HOH HOH . 
F 4 HOH B 18 418 82 HOH HOH . 
F 4 HOH B 19 419 52 HOH HOH . 
F 4 HOH B 20 420 107 HOH HOH . 
F 4 HOH B 21 421 14 HOH HOH . 
F 4 HOH B 22 422 10 HOH HOH . 
F 4 HOH B 23 423 7 HOH HOH . 
F 4 HOH B 24 424 88 HOH HOH . 
F 4 HOH B 25 425 70 HOH HOH . 
F 4 HOH B 26 426 23 HOH HOH . 
F 4 HOH B 27 427 15 HOH HOH . 
F 4 HOH B 28 428 110 HOH HOH . 
F 4 HOH B 29 429 25 HOH HOH . 
F 4 HOH B 30 430 53 HOH HOH . 
F 4 HOH B 31 431 3 HOH HOH . 
F 4 HOH B 32 432 21 HOH HOH . 
F 4 HOH B 33 433 97 HOH HOH . 
F 4 HOH B 34 434 36 HOH HOH . 
F 4 HOH B 35 435 58 HOH HOH . 
F 4 HOH B 36 436 76 HOH HOH . 
F 4 HOH B 37 437 81 HOH HOH . 
F 4 HOH B 38 438 66 HOH HOH . 
F 4 HOH B 39 439 16 HOH HOH . 
F 4 HOH B 40 440 61 HOH HOH . 
F 4 HOH B 41 441 77 HOH HOH . 
F 4 HOH B 42 442 75 HOH HOH . 
F 4 HOH B 43 443 79 HOH HOH . 
F 4 HOH B 44 444 112 HOH HOH . 
F 4 HOH B 45 445 31 HOH HOH . 
F 4 HOH B 46 446 67 HOH HOH . 
F 4 HOH B 47 447 47 HOH HOH . 
F 4 HOH B 48 448 111 HOH HOH . 
F 4 HOH B 49 449 35 HOH HOH . 
F 4 HOH B 50 450 74 HOH HOH . 
F 4 HOH B 51 451 101 HOH HOH . 
F 4 HOH B 52 452 113 HOH HOH . 
F 4 HOH B 53 453 99 HOH HOH . 
F 4 HOH B 54 454 69 HOH HOH . 
F 4 HOH B 55 455 98 HOH HOH . 
F 4 HOH B 56 456 27 HOH HOH . 
F 4 HOH B 57 457 46 HOH HOH . 
F 4 HOH B 58 458 80 HOH HOH . 
F 4 HOH B 59 459 38 HOH HOH . 
F 4 HOH B 60 460 103 HOH HOH . 
F 4 HOH B 61 461 22 HOH HOH . 
F 4 HOH B 62 462 29 HOH HOH . 
F 4 HOH B 63 463 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 R8S . B . C 2 23.589 -19.361 6.453 0.65 32.08 ? C4 R8S 301 A 1 
HETATM 2 N N1 R8S . B . C 2 23.502 -19.431 7.764 0.65 31.44 ? N1 R8S 301 A 1 
HETATM 3 N N2 R8S . B . C 2 22.668 -20.157 5.642 0.65 33.36 ? N2 R8S 301 A 1 
HETATM 4 N N3 R8S . B . C 2 22.662 -20.012 4.214 0.65 34.77 ? N3 R8S 301 A 1 
HETATM 5 N N R8S . B . C 2 24.518 -18.563 5.844 0.65 29.8 ? N R8S 301 A 1 
HETATM 6 C C3 R8S . B . C 2 25.374 -17.841 6.58 0.65 29.29 ? C3 R8S 301 A 1 
HETATM 7 C C2 R8S . B . C 2 25.313 -17.895 8.015 0.65 29.08 ? C2 R8S 301 A 1 
HETATM 8 C C1 R8S . B . C 2 24.342 -18.723 8.59 0.65 29.7 ? C1 R8S 301 A 1 
HETATM 9 O O R8S . B . C 2 24.23 -18.859 10.048 0.65 27.68 ? O R8S 301 A 1 
HETATM 10 C C R8S . B . C 2 23.087 -19.309 10.457 0.65 26.68 ? C R8S 301 A 1 
#
_model_server_stats.io_time_ms              120 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           10 
#