data_8OHO
#
_model_server_result.job_id            m8cQkQrRlOys0lIFdeABxg 
_model_server_result.datetime_utc      '2024-11-13 07:51:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8oho 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    8OHO 
#
_exptl.entry_id    8OHO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              212.289 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-cyclopentyl-3-[[(2~{S})-oxolan-2-yl]methyl]urea 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.28 
_cell.angle_gamma         90 
_cell.entry_id            8OHO 
_cell.length_a            118.7 
_cell.length_b            39.33 
_cell.length_c            68.11 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OHO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E MG MG . B MG 302 1_555 G O HOH . B HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc2 E MG MG . B MG 302 1_555 G O HOH . B HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc3 E MG MG . B MG 302 1_555 G O HOH . B HOH 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc4 E MG MG . B MG 302 1_555 G O HOH . B HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc5 E MG MG . B MG 302 1_555 G O HOH . B HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc6 E MG MG . B MG 302 1_555 G O HOH . B HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
#
_chem_comp.formula           'C11 H20 N2 O2' 
_chem_comp.formula_weight    212.289 
_chem_comp.id                REG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-cyclopentyl-3-[[(2~{S})-oxolan-2-yl]methyl]urea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C7 REG sing 277 n n 
O1 C10 REG sing 278 n n 
C6 C7 REG sing 279 n n 
C6 N1 REG sing 280 n n 
C7 C8 REG sing 281 n n 
C10 C9 REG sing 282 n n 
N1 C5 REG sing 283 n n 
C9 C8 REG sing 284 n n 
C5 O REG doub 285 n n 
C5 N REG sing 286 n n 
N C3 REG sing 287 n n 
C3 C2 REG sing 288 n n 
C3 C4 REG sing 289 n n 
C2 C1 REG sing 290 n n 
C1 C REG sing 291 n n 
C4 C REG sing 292 n n 
C4 H1 REG sing 293 n n 
C4 H2 REG sing 294 n n 
C6 H3 REG sing 295 n n 
C6 H4 REG sing 296 n n 
N1 H5 REG sing 297 n n 
C7 H6 REG sing 298 n n 
C8 H7 REG sing 299 n n 
C8 H8 REG sing 300 n n 
C9 H9 REG sing 301 n n 
C9 H10 REG sing 302 n n 
C10 H11 REG sing 303 n n 
C10 H12 REG sing 304 n n 
N H13 REG sing 305 n n 
C3 H14 REG sing 306 n n 
C2 H15 REG sing 307 n n 
C2 H16 REG sing 308 n n 
C1 H17 REG sing 309 n n 
C1 H18 REG sing 310 n n 
C H19 REG sing 311 n n 
C H20 REG sing 312 n n 
#
_atom_sites.entry_id                     8OHO 
_atom_sites.fract_transf_matrix[1][1]    0.008425 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000779 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025426 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014745 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TBJ A 1 301 301 TBJ LIG . 
D 3 REG B 1 301 301 REG LIG . 
E 4 MG B 1 302 1 MG MG . 
F 5 HOH A 1 401 22 HOH HOH . 
F 5 HOH A 2 402 39 HOH HOH . 
F 5 HOH A 3 403 76 HOH HOH . 
F 5 HOH A 4 404 64 HOH HOH . 
F 5 HOH A 5 405 106 HOH HOH . 
F 5 HOH A 6 406 4 HOH HOH . 
F 5 HOH A 7 407 71 HOH HOH . 
F 5 HOH A 8 408 62 HOH HOH . 
F 5 HOH A 9 409 77 HOH HOH . 
F 5 HOH A 10 410 14 HOH HOH . 
F 5 HOH A 11 411 10 HOH HOH . 
F 5 HOH A 12 412 13 HOH HOH . 
F 5 HOH A 13 413 24 HOH HOH . 
F 5 HOH A 14 414 41 HOH HOH . 
F 5 HOH A 15 415 7 HOH HOH . 
F 5 HOH A 16 416 60 HOH HOH . 
F 5 HOH A 17 417 63 HOH HOH . 
F 5 HOH A 18 418 43 HOH HOH . 
F 5 HOH A 19 419 32 HOH HOH . 
F 5 HOH A 20 420 54 HOH HOH . 
F 5 HOH A 21 421 12 HOH HOH . 
F 5 HOH A 22 422 17 HOH HOH . 
F 5 HOH A 23 423 85 HOH HOH . 
F 5 HOH A 24 424 8 HOH HOH . 
F 5 HOH A 25 425 101 HOH HOH . 
F 5 HOH A 26 426 59 HOH HOH . 
F 5 HOH A 27 427 81 HOH HOH . 
F 5 HOH A 28 428 23 HOH HOH . 
F 5 HOH A 29 429 16 HOH HOH . 
F 5 HOH A 30 430 103 HOH HOH . 
F 5 HOH A 31 431 66 HOH HOH . 
F 5 HOH A 32 432 31 HOH HOH . 
F 5 HOH A 33 433 107 HOH HOH . 
F 5 HOH A 34 434 50 HOH HOH . 
F 5 HOH A 35 435 36 HOH HOH . 
F 5 HOH A 36 436 75 HOH HOH . 
F 5 HOH A 37 437 42 HOH HOH . 
F 5 HOH A 38 438 86 HOH HOH . 
F 5 HOH A 39 439 104 HOH HOH . 
F 5 HOH A 40 440 79 HOH HOH . 
F 5 HOH A 41 441 84 HOH HOH . 
F 5 HOH A 42 442 68 HOH HOH . 
F 5 HOH A 43 443 27 HOH HOH . 
F 5 HOH A 44 444 91 HOH HOH . 
F 5 HOH A 45 445 88 HOH HOH . 
F 5 HOH A 46 446 57 HOH HOH . 
G 5 HOH B 1 401 92 HOH HOH . 
G 5 HOH B 2 402 29 HOH HOH . 
G 5 HOH B 3 403 93 HOH HOH . 
G 5 HOH B 4 404 55 HOH HOH . 
G 5 HOH B 5 405 38 HOH HOH . 
G 5 HOH B 6 406 96 HOH HOH . 
G 5 HOH B 7 407 46 HOH HOH . 
G 5 HOH B 8 408 94 HOH HOH . 
G 5 HOH B 9 409 33 HOH HOH . 
G 5 HOH B 10 410 40 HOH HOH . 
G 5 HOH B 11 411 102 HOH HOH . 
G 5 HOH B 12 412 110 HOH HOH . 
G 5 HOH B 13 413 78 HOH HOH . 
G 5 HOH B 14 414 28 HOH HOH . 
G 5 HOH B 15 415 5 HOH HOH . 
G 5 HOH B 16 416 9 HOH HOH . 
G 5 HOH B 17 417 3 HOH HOH . 
G 5 HOH B 18 418 37 HOH HOH . 
G 5 HOH B 19 419 95 HOH HOH . 
G 5 HOH B 20 420 73 HOH HOH . 
G 5 HOH B 21 421 2 HOH HOH . 
G 5 HOH B 22 422 21 HOH HOH . 
G 5 HOH B 23 423 11 HOH HOH . 
G 5 HOH B 24 424 49 HOH HOH . 
G 5 HOH B 25 425 6 HOH HOH . 
G 5 HOH B 26 426 19 HOH HOH . 
G 5 HOH B 27 427 53 HOH HOH . 
G 5 HOH B 28 428 48 HOH HOH . 
G 5 HOH B 29 429 97 HOH HOH . 
G 5 HOH B 30 430 56 HOH HOH . 
G 5 HOH B 31 431 20 HOH HOH . 
G 5 HOH B 32 432 15 HOH HOH . 
G 5 HOH B 33 433 109 HOH HOH . 
G 5 HOH B 34 434 74 HOH HOH . 
G 5 HOH B 35 435 52 HOH HOH . 
G 5 HOH B 36 436 51 HOH HOH . 
G 5 HOH B 37 437 67 HOH HOH . 
G 5 HOH B 38 438 47 HOH HOH . 
G 5 HOH B 39 439 70 HOH HOH . 
G 5 HOH B 40 440 98 HOH HOH . 
G 5 HOH B 41 441 34 HOH HOH . 
G 5 HOH B 42 442 69 HOH HOH . 
G 5 HOH B 43 443 80 HOH HOH . 
G 5 HOH B 44 444 25 HOH HOH . 
G 5 HOH B 45 445 105 HOH HOH . 
G 5 HOH B 46 446 58 HOH HOH . 
G 5 HOH B 47 447 100 HOH HOH . 
G 5 HOH B 48 448 30 HOH HOH . 
G 5 HOH B 49 449 87 HOH HOH . 
G 5 HOH B 50 450 72 HOH HOH . 
G 5 HOH B 51 451 99 HOH HOH . 
G 5 HOH B 52 452 82 HOH HOH . 
G 5 HOH B 53 453 44 HOH HOH . 
G 5 HOH B 54 454 83 HOH HOH . 
G 5 HOH B 55 455 90 HOH HOH . 
G 5 HOH B 56 456 26 HOH HOH . 
G 5 HOH B 57 457 18 HOH HOH . 
G 5 HOH B 58 458 35 HOH HOH . 
G 5 HOH B 59 459 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 REG . B . D 3 -4.061 -7.203 33.867 0.53 41.11 ? C4 REG 301 B 1 
HETATM 2 C C5 REG . B . D 3 -5.897 -9.168 31.375 0.53 38.65 ? C5 REG 301 B 1 
HETATM 3 C C6 REG . B . D 3 -7.386 -10.053 29.606 0.53 34.26 ? C6 REG 301 B 1 
HETATM 4 N N1 REG . B . D 3 -6.32 -9.106 29.981 0.53 36.51 ? N1 REG 301 B 1 
HETATM 5 C C7 REG . B . D 3 -7.605 -10.113 28.094 0.53 31.31 ? C7 REG 301 B 1 
HETATM 6 C C8 REG . B . D 3 -8.913 -9.275 27.685 0.53 28.87 ? C8 REG 301 B 1 
HETATM 7 C C9 REG . B . D 3 -9.308 -9.795 26.532 0.53 27.91 ? C9 REG 301 B 1 
HETATM 8 C C10 REG . B . D 3 -8.805 -11.261 26.537 0.53 26.39 ? C10 REG 301 B 1 
HETATM 9 O O REG . B . D 3 -6.455 -10.005 32.137 0.53 41.85 ? O REG 301 B 1 
HETATM 10 N N REG . B . D 3 -4.846 -8.292 31.894 0.53 39.23 ? N REG 301 B 1 
HETATM 11 C C3 REG . B . D 3 -4.436 -8.415 33.378 0.53 39.34 ? C3 REG 301 B 1 
HETATM 12 C C2 REG . B . D 3 -3.114 -9.421 33.537 0.53 39 ? C2 REG 301 B 1 
HETATM 13 C C1 REG . B . D 3 -2.003 -8.625 33.348 0.53 37.34 ? C1 REG 301 B 1 
HETATM 14 C C REG . B . D 3 -2.454 -7.163 33.78 0.53 40.33 ? C REG 301 B 1 
HETATM 15 O O1 REG . B . D 3 -7.83 -11.368 27.731 0.53 31.86 ? O1 REG 301 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           15 
#