data_8OHV # _model_server_result.job_id j4ShHTm1FEEZRfBKH-O4Zg _model_server_result.datetime_utc '2024-10-15 05:14:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ohv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8OHV # _exptl.entry_id 8OHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 177.155 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3~{S},4~{R})-4,5,5-tris(oxidanyl)piperidine-3-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.417 _cell.angle_gamma 90 _cell.entry_id 8OHV _cell.length_a 82.037 _cell.length_b 42.614 _cell.length_c 140.141 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H11 N O5' _chem_comp.formula_weight 177.155 _chem_comp.id VP5 _chem_comp.mon_nstd_flag . _chem_comp.name '(3~{S},4~{R})-4,5,5-tris(oxidanyl)piperidine-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C4 VP5 sing 380 n n N1 C3 VP5 sing 381 n n C4 C5 VP5 sing 382 n n C3 C2 VP5 sing 383 n n C5 O4 VP5 sing 384 n n C5 O3 VP5 sing 385 n n C5 C6 VP5 sing 386 n n C2 C6 VP5 sing 387 n n C2 C1 VP5 sing 388 n n C6 O5 VP5 sing 389 n n O1 C1 VP5 doub 390 n n C1 O2 VP5 sing 391 n n C4 H1 VP5 sing 392 n n C4 H2 VP5 sing 393 n n C6 H3 VP5 sing 394 n n N1 H4 VP5 sing 395 n n C3 H6 VP5 sing 396 n n C3 H7 VP5 sing 397 n n O2 H8 VP5 sing 398 n n C2 H9 VP5 sing 399 n n O3 H10 VP5 sing 400 n n O4 H11 VP5 sing 401 n n O5 H12 VP5 sing 402 n n # _atom_sites.entry_id 8OHV _atom_sites.fract_transf_matrix[1][1] 0.01219 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002022 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VP5 AAA 1 601 601 VP5 DRG . C 3 SO4 AAA 1 602 1 SO4 SO4 . D 4 HOH AAA 1 701 163 HOH HOH . D 4 HOH AAA 2 702 88 HOH HOH . D 4 HOH AAA 3 703 141 HOH HOH . D 4 HOH AAA 4 704 176 HOH HOH . D 4 HOH AAA 5 705 44 HOH HOH . D 4 HOH AAA 6 706 179 HOH HOH . D 4 HOH AAA 7 707 43 HOH HOH . D 4 HOH AAA 8 708 161 HOH HOH . D 4 HOH AAA 9 709 159 HOH HOH . D 4 HOH AAA 10 710 56 HOH HOH . D 4 HOH AAA 11 711 146 HOH HOH . D 4 HOH AAA 12 712 153 HOH HOH . D 4 HOH AAA 13 713 103 HOH HOH . D 4 HOH AAA 14 714 79 HOH HOH . D 4 HOH AAA 15 715 27 HOH HOH . D 4 HOH AAA 16 716 5 HOH HOH . D 4 HOH AAA 17 717 173 HOH HOH . D 4 HOH AAA 18 718 177 HOH HOH . D 4 HOH AAA 19 719 34 HOH HOH . D 4 HOH AAA 20 720 87 HOH HOH . D 4 HOH AAA 21 721 24 HOH HOH . D 4 HOH AAA 22 722 63 HOH HOH . D 4 HOH AAA 23 723 139 HOH HOH . D 4 HOH AAA 24 724 19 HOH HOH . D 4 HOH AAA 25 725 168 HOH HOH . D 4 HOH AAA 26 726 26 HOH HOH . D 4 HOH AAA 27 727 105 HOH HOH . D 4 HOH AAA 28 728 501 HOH HOH . D 4 HOH AAA 29 729 20 HOH HOH . D 4 HOH AAA 30 730 68 HOH HOH . D 4 HOH AAA 31 731 178 HOH HOH . D 4 HOH AAA 32 732 69 HOH HOH . D 4 HOH AAA 33 733 114 HOH HOH . D 4 HOH AAA 34 734 108 HOH HOH . D 4 HOH AAA 35 735 171 HOH HOH . D 4 HOH AAA 36 736 37 HOH HOH . D 4 HOH AAA 37 737 51 HOH HOH . D 4 HOH AAA 38 738 117 HOH HOH . D 4 HOH AAA 39 739 165 HOH HOH . D 4 HOH AAA 40 740 97 HOH HOH . D 4 HOH AAA 41 741 148 HOH HOH . D 4 HOH AAA 42 742 113 HOH HOH . D 4 HOH AAA 43 743 169 HOH HOH . D 4 HOH AAA 44 744 1 HOH HOH . D 4 HOH AAA 45 745 174 HOH HOH . D 4 HOH AAA 46 746 28 HOH HOH . D 4 HOH AAA 47 747 45 HOH HOH . D 4 HOH AAA 48 748 54 HOH HOH . D 4 HOH AAA 49 749 160 HOH HOH . D 4 HOH AAA 50 750 121 HOH HOH . D 4 HOH AAA 51 751 101 HOH HOH . D 4 HOH AAA 52 752 129 HOH HOH . D 4 HOH AAA 53 753 149 HOH HOH . D 4 HOH AAA 54 754 94 HOH HOH . D 4 HOH AAA 55 755 152 HOH HOH . D 4 HOH AAA 56 756 23 HOH HOH . D 4 HOH AAA 57 757 18 HOH HOH . D 4 HOH AAA 58 758 12 HOH HOH . D 4 HOH AAA 59 759 144 HOH HOH . D 4 HOH AAA 60 760 116 HOH HOH . D 4 HOH AAA 61 761 15 HOH HOH . D 4 HOH AAA 62 762 73 HOH HOH . D 4 HOH AAA 63 763 83 HOH HOH . D 4 HOH AAA 64 764 95 HOH HOH . D 4 HOH AAA 65 765 145 HOH HOH . D 4 HOH AAA 66 766 7 HOH HOH . D 4 HOH AAA 67 767 42 HOH HOH . D 4 HOH AAA 68 768 8 HOH HOH . D 4 HOH AAA 69 769 2 HOH HOH . D 4 HOH AAA 70 770 40 HOH HOH . D 4 HOH AAA 71 771 14 HOH HOH . D 4 HOH AAA 72 772 142 HOH HOH . D 4 HOH AAA 73 773 30 HOH HOH . D 4 HOH AAA 74 774 47 HOH HOH . D 4 HOH AAA 75 775 81 HOH HOH . D 4 HOH AAA 76 776 70 HOH HOH . D 4 HOH AAA 77 777 84 HOH HOH . D 4 HOH AAA 78 778 122 HOH HOH . D 4 HOH AAA 79 779 71 HOH HOH . D 4 HOH AAA 80 780 21 HOH HOH . D 4 HOH AAA 81 781 140 HOH HOH . D 4 HOH AAA 82 782 167 HOH HOH . D 4 HOH AAA 83 783 22 HOH HOH . D 4 HOH AAA 84 784 65 HOH HOH . D 4 HOH AAA 85 785 91 HOH HOH . D 4 HOH AAA 86 786 170 HOH HOH . D 4 HOH AAA 87 787 31 HOH HOH . D 4 HOH AAA 88 788 75 HOH HOH . D 4 HOH AAA 89 789 82 HOH HOH . D 4 HOH AAA 90 790 11 HOH HOH . D 4 HOH AAA 91 791 17 HOH HOH . D 4 HOH AAA 92 792 61 HOH HOH . D 4 HOH AAA 93 793 53 HOH HOH . D 4 HOH AAA 94 794 32 HOH HOH . D 4 HOH AAA 95 795 46 HOH HOH . D 4 HOH AAA 96 796 39 HOH HOH . D 4 HOH AAA 97 797 77 HOH HOH . D 4 HOH AAA 98 798 104 HOH HOH . D 4 HOH AAA 99 799 72 HOH HOH . D 4 HOH AAA 100 800 123 HOH HOH . D 4 HOH AAA 101 801 6 HOH HOH . D 4 HOH AAA 102 802 119 HOH HOH . D 4 HOH AAA 103 803 147 HOH HOH . D 4 HOH AAA 104 804 59 HOH HOH . D 4 HOH AAA 105 805 143 HOH HOH . D 4 HOH AAA 106 806 25 HOH HOH . D 4 HOH AAA 107 807 78 HOH HOH . D 4 HOH AAA 108 808 154 HOH HOH . D 4 HOH AAA 109 809 132 HOH HOH . D 4 HOH AAA 110 810 74 HOH HOH . D 4 HOH AAA 111 811 13 HOH HOH . D 4 HOH AAA 112 812 67 HOH HOH . D 4 HOH AAA 113 813 156 HOH HOH . D 4 HOH AAA 114 814 164 HOH HOH . D 4 HOH AAA 115 815 109 HOH HOH . D 4 HOH AAA 116 816 90 HOH HOH . D 4 HOH AAA 117 817 93 HOH HOH . D 4 HOH AAA 118 818 99 HOH HOH . D 4 HOH AAA 119 819 9 HOH HOH . D 4 HOH AAA 120 820 29 HOH HOH . D 4 HOH AAA 121 821 89 HOH HOH . D 4 HOH AAA 122 822 55 HOH HOH . D 4 HOH AAA 123 823 60 HOH HOH . D 4 HOH AAA 124 824 110 HOH HOH . D 4 HOH AAA 125 825 155 HOH HOH . D 4 HOH AAA 126 826 102 HOH HOH . D 4 HOH AAA 127 827 136 HOH HOH . D 4 HOH AAA 128 828 85 HOH HOH . D 4 HOH AAA 129 829 33 HOH HOH . D 4 HOH AAA 130 830 52 HOH HOH . D 4 HOH AAA 131 831 96 HOH HOH . D 4 HOH AAA 132 832 98 HOH HOH . D 4 HOH AAA 133 833 111 HOH HOH . D 4 HOH AAA 134 834 112 HOH HOH . D 4 HOH AAA 135 835 4 HOH HOH . D 4 HOH AAA 136 836 38 HOH HOH . D 4 HOH AAA 137 837 36 HOH HOH . D 4 HOH AAA 138 838 127 HOH HOH . D 4 HOH AAA 139 839 10 HOH HOH . D 4 HOH AAA 140 840 50 HOH HOH . D 4 HOH AAA 141 841 58 HOH HOH . D 4 HOH AAA 142 842 66 HOH HOH . D 4 HOH AAA 143 843 3 HOH HOH . D 4 HOH AAA 144 844 16 HOH HOH . D 4 HOH AAA 145 845 86 HOH HOH . D 4 HOH AAA 146 846 126 HOH HOH . D 4 HOH AAA 147 847 76 HOH HOH . D 4 HOH AAA 148 848 100 HOH HOH . D 4 HOH AAA 149 849 130 HOH HOH . D 4 HOH AAA 150 850 150 HOH HOH . D 4 HOH AAA 151 851 35 HOH HOH . D 4 HOH AAA 152 852 133 HOH HOH . D 4 HOH AAA 153 853 107 HOH HOH . D 4 HOH AAA 154 854 124 HOH HOH . D 4 HOH AAA 155 855 131 HOH HOH . D 4 HOH AAA 156 856 106 HOH HOH . D 4 HOH AAA 157 857 134 HOH HOH . D 4 HOH AAA 158 858 80 HOH HOH . D 4 HOH AAA 159 859 125 HOH HOH . D 4 HOH AAA 160 860 92 HOH HOH . D 4 HOH AAA 161 861 120 HOH HOH . D 4 HOH AAA 162 862 57 HOH HOH . D 4 HOH AAA 163 863 151 HOH HOH . D 4 HOH AAA 164 864 172 HOH HOH . D 4 HOH AAA 165 865 118 HOH HOH . D 4 HOH AAA 166 866 175 HOH HOH . D 4 HOH AAA 167 867 62 HOH HOH . D 4 HOH AAA 168 868 166 HOH HOH . D 4 HOH AAA 169 869 138 HOH HOH . D 4 HOH AAA 170 870 158 HOH HOH . D 4 HOH AAA 171 871 48 HOH HOH . D 4 HOH AAA 172 872 182 HOH HOH . D 4 HOH AAA 173 873 162 HOH HOH . D 4 HOH AAA 174 874 128 HOH HOH . D 4 HOH AAA 175 875 41 HOH HOH . D 4 HOH AAA 176 876 180 HOH HOH . D 4 HOH AAA 177 877 184 HOH HOH . D 4 HOH AAA 178 878 115 HOH HOH . D 4 HOH AAA 179 879 137 HOH HOH . D 4 HOH AAA 180 880 183 HOH HOH . D 4 HOH AAA 181 881 157 HOH HOH . D 4 HOH AAA 182 882 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 VP5 . . . B 2 10.14 -10.175 -22.315 1 16.77 ? C4 VP5 601 AAA 1 HETATM 2 C C5 VP5 . . . B 2 10.489 -10.73 -20.943 1 16.13 ? C5 VP5 601 AAA 1 HETATM 3 C C6 VP5 . . . B 2 10.006 -9.751 -19.861 1 16.02 ? C6 VP5 601 AAA 1 HETATM 4 N N1 VP5 . . . B 2 8.678 -9.92 -22.415 1 17.39 ? N1 VP5 601 AAA 1 HETATM 5 C C3 VP5 . . . B 2 8.234 -8.923 -21.442 1 17.2 ? C3 VP5 601 AAA 1 HETATM 6 O O1 VP5 . . . B 2 8.363 -7.16 -19.387 1 18.18 ? O1 VP5 601 AAA 1 HETATM 7 C C1 VP5 . . . B 2 8.147 -8.316 -19.029 1 17.74 ? C1 VP5 601 AAA 1 HETATM 8 O O2 VP5 . . . B 2 7.562 -8.624 -17.982 1 16.25 ? O2 VP5 601 AAA 1 HETATM 9 C C2 VP5 . . . B 2 8.522 -9.398 -20.021 1 16.07 ? C2 VP5 601 AAA 1 HETATM 10 O O3 VP5 . . . B 2 9.79 -11.946 -20.72 1 17.83 ? O3 VP5 601 AAA 1 HETATM 11 O O4 VP5 . . . B 2 11.875 -10.97 -20.82 1 16.11 ? O4 VP5 601 AAA 1 HETATM 12 O O5 VP5 . . . B 2 10.248 -10.32 -18.578 1 17.61 ? O5 VP5 601 AAA 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #