data_8OIB # _model_server_result.job_id WCKQuqx8RwkWVYJJ0y0fOw _model_server_result.datetime_utc '2024-11-06 21:39:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oib # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":400}' # _entry.id 8OIB # _exptl.entry_id 8OIB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.562 _cell.angle_gamma 90 _cell.entry_id 8OIB _cell.length_a 51.034 _cell.length_b 156.998 _cell.length_c 88.729 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OIB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 10 A ASP 10 1_555 E CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc2 A OD1 ASP 15 A ASP 15 1_555 E CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc3 A OD2 ASP 15 A ASP 15 1_555 E CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc4 A O THR 142 A THR 142 1_555 E CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc5 A OD2 ASP 263 A ASP 263 1_555 E CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc6 E CA CA . A CA 400 1_555 F O3 GOL . A GOL 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc7 E CA CA . A CA 400 1_555 M O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc8 E CA CA . A CA 400 1_555 M O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc9 B OD1 ASP 10 B ASP 10 1_555 G CA CA . B CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc10 B OD1 ASP 15 B ASP 15 1_555 G CA CA . B CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc11 B OD2 ASP 15 B ASP 15 1_555 G CA CA . B CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc12 B O THR 142 B THR 142 1_555 G CA CA . B CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc13 B OD2 ASP 263 B ASP 263 1_555 G CA CA . B CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc14 G CA CA . B CA 400 1_555 H O3 GOL . B GOL 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc15 G CA CA . B CA 400 1_555 N O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc16 G CA CA . B CA 400 1_555 N O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc17 C OD1 ASP 10 C ASP 10 1_555 I CA CA . C CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc18 C OD1 ASP 15 C ASP 15 1_555 I CA CA . C CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc19 C OD2 ASP 15 C ASP 15 1_555 I CA CA . C CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc20 C O THR 142 C THR 142 1_555 I CA CA . C CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc21 C OD2 ASP 263 C ASP 263 1_555 I CA CA . C CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc22 I CA CA . C CA 400 1_555 J O3 GOL . C GOL 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc23 I CA CA . C CA 400 1_555 O O HOH . C HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc24 I CA CA . C CA 400 1_555 O O HOH . C HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc25 D OD1 ASP 10 D ASP 10 1_555 K CA CA . D CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc26 D OD1 ASP 15 D ASP 15 1_555 K CA CA . D CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc27 D OD2 ASP 15 D ASP 15 1_555 K CA CA . D CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc28 D O THR 142 D THR 142 1_555 K CA CA . D CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc29 D OD2 ASP 263 D ASP 263 1_555 K CA CA . D CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc30 K CA CA . D CA 400 1_555 L O3 GOL . D GOL 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc31 K CA CA . D CA 400 1_555 P O HOH . D HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc32 K CA CA . D CA 400 1_555 P O HOH . D HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8OIB _atom_sites.fract_transf_matrix[1][1] 0.019595 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000192 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011271 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CA A 1 400 400 CA CA . F 3 GOL A 1 401 401 GOL GOL . G 2 CA B 1 400 400 CA CA . H 3 GOL B 1 401 401 GOL GOL . I 2 CA C 1 400 400 CA CA . J 3 GOL C 1 401 401 GOL GOL . K 2 CA D 1 400 400 CA CA . L 3 GOL D 1 401 401 GOL GOL . M 4 HOH A 1 501 102 HOH HOH . M 4 HOH A 2 502 6 HOH HOH . M 4 HOH A 3 503 107 HOH HOH . M 4 HOH A 4 504 92 HOH HOH . M 4 HOH A 5 505 105 HOH HOH . M 4 HOH A 6 506 82 HOH HOH . M 4 HOH A 7 507 3 HOH HOH . M 4 HOH A 8 508 4 HOH HOH . M 4 HOH A 9 509 1 HOH HOH . M 4 HOH A 10 510 38 HOH HOH . M 4 HOH A 11 511 103 HOH HOH . M 4 HOH A 12 512 77 HOH HOH . M 4 HOH A 13 513 87 HOH HOH . M 4 HOH A 14 514 47 HOH HOH . M 4 HOH A 15 515 79 HOH HOH . M 4 HOH A 16 516 100 HOH HOH . M 4 HOH A 17 517 104 HOH HOH . M 4 HOH A 18 518 40 HOH HOH . M 4 HOH A 19 519 35 HOH HOH . M 4 HOH A 20 520 20 HOH HOH . M 4 HOH A 21 521 106 HOH HOH . M 4 HOH A 22 522 26 HOH HOH . M 4 HOH A 23 523 46 HOH HOH . M 4 HOH A 24 524 90 HOH HOH . M 4 HOH A 25 525 68 HOH HOH . M 4 HOH A 26 526 96 HOH HOH . M 4 HOH A 27 527 67 HOH HOH . M 4 HOH A 28 528 71 HOH HOH . M 4 HOH A 29 529 17 HOH HOH . M 4 HOH A 30 530 8 HOH HOH . M 4 HOH A 31 531 76 HOH HOH . M 4 HOH A 32 532 86 HOH HOH . M 4 HOH A 33 533 93 HOH HOH . M 4 HOH A 34 534 88 HOH HOH . M 4 HOH A 35 535 5 HOH HOH . N 4 HOH B 1 501 19 HOH HOH . N 4 HOH B 2 502 16 HOH HOH . N 4 HOH B 3 503 23 HOH HOH . N 4 HOH B 4 504 110 HOH HOH . N 4 HOH B 5 505 78 HOH HOH . N 4 HOH B 6 506 125 HOH HOH . N 4 HOH B 7 507 108 HOH HOH . N 4 HOH B 8 508 109 HOH HOH . N 4 HOH B 9 509 13 HOH HOH . N 4 HOH B 10 510 45 HOH HOH . N 4 HOH B 11 511 42 HOH HOH . N 4 HOH B 12 512 28 HOH HOH . N 4 HOH B 13 513 14 HOH HOH . N 4 HOH B 14 514 25 HOH HOH . N 4 HOH B 15 515 7 HOH HOH . N 4 HOH B 16 516 83 HOH HOH . N 4 HOH B 17 517 34 HOH HOH . N 4 HOH B 18 518 10 HOH HOH . N 4 HOH B 19 519 36 HOH HOH . N 4 HOH B 20 520 66 HOH HOH . N 4 HOH B 21 521 9 HOH HOH . N 4 HOH B 22 522 75 HOH HOH . N 4 HOH B 23 523 111 HOH HOH . N 4 HOH B 24 524 18 HOH HOH . N 4 HOH B 25 525 89 HOH HOH . N 4 HOH B 26 526 99 HOH HOH . O 4 HOH C 1 501 15 HOH HOH . O 4 HOH C 2 502 112 HOH HOH . O 4 HOH C 3 503 115 HOH HOH . O 4 HOH C 4 504 84 HOH HOH . O 4 HOH C 5 505 43 HOH HOH . O 4 HOH C 6 506 39 HOH HOH . O 4 HOH C 7 507 80 HOH HOH . O 4 HOH C 8 508 48 HOH HOH . O 4 HOH C 9 509 114 HOH HOH . O 4 HOH C 10 510 33 HOH HOH . O 4 HOH C 11 511 52 HOH HOH . O 4 HOH C 12 512 51 HOH HOH . O 4 HOH C 13 513 24 HOH HOH . O 4 HOH C 14 514 61 HOH HOH . O 4 HOH C 15 515 97 HOH HOH . O 4 HOH C 16 516 55 HOH HOH . O 4 HOH C 17 517 117 HOH HOH . O 4 HOH C 18 518 49 HOH HOH . O 4 HOH C 19 519 101 HOH HOH . O 4 HOH C 20 520 32 HOH HOH . O 4 HOH C 21 521 37 HOH HOH . O 4 HOH C 22 522 30 HOH HOH . O 4 HOH C 23 523 50 HOH HOH . O 4 HOH C 24 524 116 HOH HOH . O 4 HOH C 25 525 113 HOH HOH . O 4 HOH C 26 526 11 HOH HOH . O 4 HOH C 27 527 62 HOH HOH . O 4 HOH C 28 528 63 HOH HOH . O 4 HOH C 29 529 59 HOH HOH . O 4 HOH C 30 530 54 HOH HOH . P 4 HOH D 1 501 74 HOH HOH . P 4 HOH D 2 502 122 HOH HOH . P 4 HOH D 3 503 120 HOH HOH . P 4 HOH D 4 504 53 HOH HOH . P 4 HOH D 5 505 123 HOH HOH . P 4 HOH D 6 506 81 HOH HOH . P 4 HOH D 7 507 126 HOH HOH . P 4 HOH D 8 508 41 HOH HOH . P 4 HOH D 9 509 94 HOH HOH . P 4 HOH D 10 510 85 HOH HOH . P 4 HOH D 11 511 12 HOH HOH . P 4 HOH D 12 512 124 HOH HOH . P 4 HOH D 13 513 31 HOH HOH . P 4 HOH D 14 514 22 HOH HOH . P 4 HOH D 15 515 70 HOH HOH . P 4 HOH D 16 516 98 HOH HOH . P 4 HOH D 17 517 21 HOH HOH . P 4 HOH D 18 518 95 HOH HOH . P 4 HOH D 19 519 69 HOH HOH . P 4 HOH D 20 520 57 HOH HOH . P 4 HOH D 21 521 73 HOH HOH . P 4 HOH D 22 522 27 HOH HOH . P 4 HOH D 23 523 65 HOH HOH . P 4 HOH D 24 524 119 HOH HOH . P 4 HOH D 25 525 58 HOH HOH . P 4 HOH D 26 526 29 HOH HOH . P 4 HOH D 27 527 56 HOH HOH . P 4 HOH D 28 528 64 HOH HOH . P 4 HOH D 29 529 121 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 26.053 _atom_site.Cartn_y -34.507 _atom_site.Cartn_z 6.07 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.85 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 400 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #