data_8OIJ # _model_server_result.job_id O2UL0jMw5gSDmKHsCiyF-w _model_server_result.datetime_utc '2024-11-24 19:50:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1101}' # _entry.id 8OIJ # _exptl.entry_id 8OIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8OIJ _cell.length_a 76.59 _cell.length_b 76.59 _cell.length_c 268.47 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8OIJ _atom_sites.fract_transf_matrix[1][1] 0.013057 _atom_sites.fract_transf_matrix[1][2] 0.007538 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EDO A 1 301 276 EDO EDO . F 4 PEG B 1 301 275 PEG PEG . G 3 EDO D 1 1101 277 EDO EDO . H 5 HOH A 1 401 44 HOH HOH . H 5 HOH A 2 402 36 HOH HOH . H 5 HOH A 3 403 33 HOH HOH . H 5 HOH A 4 404 15 HOH HOH . H 5 HOH A 5 405 83 HOH HOH . H 5 HOH A 6 406 73 HOH HOH . H 5 HOH A 7 407 59 HOH HOH . H 5 HOH A 8 408 40 HOH HOH . H 5 HOH A 9 409 4 HOH HOH . H 5 HOH A 10 410 7 HOH HOH . H 5 HOH A 11 411 13 HOH HOH . H 5 HOH A 12 412 88 HOH HOH . H 5 HOH A 13 413 55 HOH HOH . H 5 HOH A 14 414 5 HOH HOH . H 5 HOH A 15 415 18 HOH HOH . H 5 HOH A 16 416 93 HOH HOH . H 5 HOH A 17 417 32 HOH HOH . H 5 HOH A 18 418 6 HOH HOH . H 5 HOH A 19 419 24 HOH HOH . H 5 HOH A 20 420 72 HOH HOH . H 5 HOH A 21 421 28 HOH HOH . H 5 HOH A 22 422 9 HOH HOH . H 5 HOH A 23 423 76 HOH HOH . H 5 HOH A 24 424 77 HOH HOH . H 5 HOH A 25 425 68 HOH HOH . H 5 HOH A 26 426 17 HOH HOH . H 5 HOH A 27 427 20 HOH HOH . H 5 HOH A 28 428 69 HOH HOH . H 5 HOH A 29 429 30 HOH HOH . H 5 HOH A 30 430 50 HOH HOH . H 5 HOH A 31 431 31 HOH HOH . H 5 HOH A 32 432 22 HOH HOH . H 5 HOH A 33 433 64 HOH HOH . H 5 HOH A 34 434 48 HOH HOH . H 5 HOH A 35 435 95 HOH HOH . H 5 HOH A 36 436 60 HOH HOH . H 5 HOH A 37 437 29 HOH HOH . H 5 HOH A 38 438 71 HOH HOH . H 5 HOH A 39 439 92 HOH HOH . H 5 HOH A 40 440 41 HOH HOH . H 5 HOH A 41 441 65 HOH HOH . I 5 HOH B 1 401 39 HOH HOH . I 5 HOH B 2 402 97 HOH HOH . I 5 HOH B 3 403 61 HOH HOH . I 5 HOH B 4 404 27 HOH HOH . I 5 HOH B 5 405 26 HOH HOH . I 5 HOH B 6 406 3 HOH HOH . I 5 HOH B 7 407 81 HOH HOH . I 5 HOH B 8 408 12 HOH HOH . I 5 HOH B 9 409 74 HOH HOH . I 5 HOH B 10 410 14 HOH HOH . I 5 HOH B 11 411 16 HOH HOH . I 5 HOH B 12 412 2 HOH HOH . I 5 HOH B 13 413 1 HOH HOH . I 5 HOH B 14 414 37 HOH HOH . I 5 HOH B 15 415 62 HOH HOH . I 5 HOH B 16 416 35 HOH HOH . I 5 HOH B 17 417 8 HOH HOH . I 5 HOH B 18 418 11 HOH HOH . I 5 HOH B 19 419 10 HOH HOH . I 5 HOH B 20 420 47 HOH HOH . I 5 HOH B 21 421 46 HOH HOH . I 5 HOH B 22 422 52 HOH HOH . I 5 HOH B 23 423 84 HOH HOH . I 5 HOH B 24 424 34 HOH HOH . I 5 HOH B 25 425 25 HOH HOH . I 5 HOH B 26 426 75 HOH HOH . I 5 HOH B 27 427 42 HOH HOH . I 5 HOH B 28 428 53 HOH HOH . I 5 HOH B 29 429 38 HOH HOH . I 5 HOH B 30 430 49 HOH HOH . I 5 HOH B 31 431 19 HOH HOH . I 5 HOH B 32 432 78 HOH HOH . I 5 HOH B 33 433 94 HOH HOH . I 5 HOH B 34 434 70 HOH HOH . I 5 HOH B 35 435 21 HOH HOH . I 5 HOH B 36 436 89 HOH HOH . I 5 HOH B 37 437 79 HOH HOH . I 5 HOH B 38 438 91 HOH HOH . I 5 HOH B 39 439 45 HOH HOH . I 5 HOH B 40 440 57 HOH HOH . I 5 HOH B 41 441 63 HOH HOH . I 5 HOH B 42 442 43 HOH HOH . I 5 HOH B 43 443 58 HOH HOH . I 5 HOH B 44 444 54 HOH HOH . I 5 HOH B 45 445 86 HOH HOH . I 5 HOH B 46 446 56 HOH HOH . I 5 HOH B 47 447 82 HOH HOH . I 5 HOH B 48 448 90 HOH HOH . I 5 HOH B 49 449 85 HOH HOH . I 5 HOH B 50 450 67 HOH HOH . I 5 HOH B 51 451 66 HOH HOH . J 5 HOH C 1 1101 23 HOH HOH . K 5 HOH D 1 1201 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 -28.985 -17.99 -16.663 1 20 ? C1 EDO 1101 D 1 HETATM 2 O O1 EDO . . . G 3 -29.16 -17.072 -15.607 1 20 ? O1 EDO 1101 D 1 HETATM 3 C C2 EDO . . . G 3 -28.282 -17.403 -17.824 1 20 ? C2 EDO 1101 D 1 HETATM 4 O O2 EDO . . . G 3 -26.893 -17.292 -17.615 1 20 ? O2 EDO 1101 D 1 HETATM 5 H H11 EDO . . . G 3 -29.961 -18.348 -16.988 1 20 ? H11 EDO 1101 D 1 HETATM 6 H H12 EDO . . . G 3 -28.414 -18.843 -16.301 1 20 ? H12 EDO 1101 D 1 HETATM 7 H HO1 EDO . . . G 3 -28.537 -16.337 -15.717 1 20 ? HO1 EDO 1101 D 1 HETATM 8 H H21 EDO . . . G 3 -28.692 -16.414 -18.022 1 20 ? H21 EDO 1101 D 1 HETATM 9 H H22 EDO . . . G 3 -28.462 -18.027 -18.698 1 20 ? H22 EDO 1101 D 1 HETATM 10 H HO2 EDO . . . G 3 -26.709 -17.345 -16.665 1 20 ? HO2 EDO 1101 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #