data_8OJB # _model_server_result.job_id s6YgRPUAvomricfkN5rZcA _model_server_result.datetime_utc '2025-01-15 10:25:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ojb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1301}' # _entry.id 8OJB # _exptl.entry_id 8OJB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OJB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OJB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DA 46 C DA 23 1_555 A P AS 47 C AS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? metalc ? metalc1 A O5' AS 47 C AS 33 1_555 D CA CA . A CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc2 B OD1 ASP 368 A ASP 368 1_555 C CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc3 B OD1 ASP 368 A ASP 368 1_555 D CA CA . A CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc4 B OD2 ASP 368 A ASP 368 1_555 D CA CA . A CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc5 B O ILE 369 A ILE 369 1_555 D CA CA . A CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc6 B OE2 GLU 370 A GLU 370 1_555 D CA CA . A CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc7 B O TYR 465 A TYR 465 1_555 C CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc8 B OD1 ASP 471 A ASP 471 1_555 C CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc9 B OD2 ASP 471 A ASP 471 1_555 C CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc10 C CA CA . A CA 1301 1_555 E O HOH . A HOH 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc11 C CA CA . A CA 1301 1_555 E O HOH . A HOH 1420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc12 C CA CA . A CA 1301 1_555 E O HOH . A HOH 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc13 C CA CA . A CA 1301 1_555 E O HOH . A HOH 1496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc14 D CA CA . A CA 1302 1_555 E O HOH . A HOH 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc15 D CA CA . A CA 1302 1_555 E O HOH . A HOH 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8OJB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 1301 1 CA CA . D 3 CA A 1 1302 2 CA CA . E 4 HOH A 1 1401 85 HOH HOH . E 4 HOH A 2 1402 116 HOH HOH . E 4 HOH A 3 1403 109 HOH HOH . E 4 HOH A 4 1404 33 HOH HOH . E 4 HOH A 5 1405 26 HOH HOH . E 4 HOH A 6 1406 79 HOH HOH . E 4 HOH A 7 1407 104 HOH HOH . E 4 HOH A 8 1408 12 HOH HOH . E 4 HOH A 9 1409 100 HOH HOH . E 4 HOH A 10 1410 41 HOH HOH . E 4 HOH A 11 1411 40 HOH HOH . E 4 HOH A 12 1412 69 HOH HOH . E 4 HOH A 13 1413 111 HOH HOH . E 4 HOH A 14 1414 27 HOH HOH . E 4 HOH A 15 1415 14 HOH HOH . E 4 HOH A 16 1416 82 HOH HOH . E 4 HOH A 17 1417 5 HOH HOH . E 4 HOH A 18 1418 1 HOH HOH . E 4 HOH A 19 1419 106 HOH HOH . E 4 HOH A 20 1420 4 HOH HOH . E 4 HOH A 21 1421 49 HOH HOH . E 4 HOH A 22 1422 13 HOH HOH . E 4 HOH A 23 1423 18 HOH HOH . E 4 HOH A 24 1424 63 HOH HOH . E 4 HOH A 25 1425 29 HOH HOH . E 4 HOH A 26 1426 102 HOH HOH . E 4 HOH A 27 1427 59 HOH HOH . E 4 HOH A 28 1428 105 HOH HOH . E 4 HOH A 29 1429 57 HOH HOH . E 4 HOH A 30 1430 35 HOH HOH . E 4 HOH A 31 1431 78 HOH HOH . E 4 HOH A 32 1432 45 HOH HOH . E 4 HOH A 33 1433 24 HOH HOH . E 4 HOH A 34 1434 7 HOH HOH . E 4 HOH A 35 1435 93 HOH HOH . E 4 HOH A 36 1436 11 HOH HOH . E 4 HOH A 37 1437 32 HOH HOH . E 4 HOH A 38 1438 70 HOH HOH . E 4 HOH A 39 1439 55 HOH HOH . E 4 HOH A 40 1440 23 HOH HOH . E 4 HOH A 41 1441 42 HOH HOH . E 4 HOH A 42 1442 84 HOH HOH . E 4 HOH A 43 1443 21 HOH HOH . E 4 HOH A 44 1444 10 HOH HOH . E 4 HOH A 45 1445 67 HOH HOH . E 4 HOH A 46 1446 107 HOH HOH . E 4 HOH A 47 1447 44 HOH HOH . E 4 HOH A 48 1448 9 HOH HOH . E 4 HOH A 49 1449 6 HOH HOH . E 4 HOH A 50 1450 2 HOH HOH . E 4 HOH A 51 1451 25 HOH HOH . E 4 HOH A 52 1452 53 HOH HOH . E 4 HOH A 53 1453 34 HOH HOH . E 4 HOH A 54 1454 64 HOH HOH . E 4 HOH A 55 1455 37 HOH HOH . E 4 HOH A 56 1456 68 HOH HOH . E 4 HOH A 57 1457 88 HOH HOH . E 4 HOH A 58 1458 52 HOH HOH . E 4 HOH A 59 1459 92 HOH HOH . E 4 HOH A 60 1460 46 HOH HOH . E 4 HOH A 61 1461 86 HOH HOH . E 4 HOH A 62 1462 103 HOH HOH . E 4 HOH A 63 1463 113 HOH HOH . E 4 HOH A 64 1464 89 HOH HOH . E 4 HOH A 65 1465 51 HOH HOH . E 4 HOH A 66 1466 38 HOH HOH . E 4 HOH A 67 1467 31 HOH HOH . E 4 HOH A 68 1468 95 HOH HOH . E 4 HOH A 69 1469 99 HOH HOH . E 4 HOH A 70 1470 87 HOH HOH . E 4 HOH A 71 1471 54 HOH HOH . E 4 HOH A 72 1472 65 HOH HOH . E 4 HOH A 73 1473 110 HOH HOH . E 4 HOH A 74 1474 47 HOH HOH . E 4 HOH A 75 1475 114 HOH HOH . E 4 HOH A 76 1476 58 HOH HOH . E 4 HOH A 77 1477 39 HOH HOH . E 4 HOH A 78 1478 74 HOH HOH . E 4 HOH A 79 1479 15 HOH HOH . E 4 HOH A 80 1480 61 HOH HOH . E 4 HOH A 81 1481 83 HOH HOH . E 4 HOH A 82 1482 28 HOH HOH . E 4 HOH A 83 1483 16 HOH HOH . E 4 HOH A 84 1484 19 HOH HOH . E 4 HOH A 85 1485 17 HOH HOH . E 4 HOH A 86 1486 56 HOH HOH . E 4 HOH A 87 1487 20 HOH HOH . E 4 HOH A 88 1488 101 HOH HOH . E 4 HOH A 89 1489 66 HOH HOH . E 4 HOH A 90 1490 43 HOH HOH . E 4 HOH A 91 1491 112 HOH HOH . E 4 HOH A 92 1492 60 HOH HOH . E 4 HOH A 93 1493 90 HOH HOH . E 4 HOH A 94 1494 50 HOH HOH . E 4 HOH A 95 1495 36 HOH HOH . E 4 HOH A 96 1496 3 HOH HOH . E 4 HOH A 97 1497 80 HOH HOH . E 4 HOH A 98 1498 8 HOH HOH . E 4 HOH A 99 1499 75 HOH HOH . E 4 HOH A 100 1500 108 HOH HOH . E 4 HOH A 101 1501 22 HOH HOH . E 4 HOH A 102 1502 30 HOH HOH . E 4 HOH A 103 1503 77 HOH HOH . E 4 HOH A 104 1504 48 HOH HOH . E 4 HOH A 105 1505 71 HOH HOH . E 4 HOH A 106 1506 72 HOH HOH . E 4 HOH A 107 1507 97 HOH HOH . E 4 HOH A 108 1508 73 HOH HOH . E 4 HOH A 109 1509 91 HOH HOH . E 4 HOH A 110 1510 115 HOH HOH . E 4 HOH A 111 1511 76 HOH HOH . E 4 HOH A 112 1512 94 HOH HOH . E 4 HOH A 113 1513 96 HOH HOH . E 4 HOH A 114 1514 62 HOH HOH . E 4 HOH A 115 1515 98 HOH HOH . E 4 HOH A 116 1516 81 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 171.764 _atom_site.Cartn_y 161.106 _atom_site.Cartn_z 165.682 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #