data_8OJX
#
_model_server_result.job_id            9LBuEwtYVfJtQvvBX0ssKg 
_model_server_result.datetime_utc      '2024-11-14 10:59:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ojx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    8OJX 
#
_exptl.entry_id    8OJX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              599.827 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            trichloro{(1,2,3,4,5-eta)-1,2,3,4-tetramethyl-5-[2-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)ethyl]cyclopentadienyl}rhodium(1+) 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8OJX 
_cell.length_a            57.552 
_cell.length_b            57.552 
_cell.length_c            183.993 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OJX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? 0 -1 0 -1 0 0 0 0 -1 57.552 57.552 0 
3 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 57.552 57.552 0 
4 'point symmetry operation' ? ? 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B RH 0OD . A 0OD 201 1_555 F O HOH . A HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc2 E IR IR . A IR 204 1_555 F O HOH . A HOH 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
#
_chem_comp.formula           'C21 H32 Cl3 N3 O2 Rh S 1' 
_chem_comp.formula_weight    599.827 
_chem_comp.id                0OD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              trichloro{(1,2,3,4,5-eta)-1,2,3,4-tetramethyl-5-[2-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)ethyl]cyclopentadienyl}rhodium(1+) 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '[Cp*(Biot-methylene)RhCl(H2O)2]+' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
RH C15 0OD sing 1 n n 
RH C17 0OD sing 2 n n 
RH C16 0OD sing 3 n n 
RH CL1 0OD sing 4 n n 
C1 N2 0OD sing 5 n n 
N1 C2 0OD sing 6 n n 
N1 C1 0OD sing 7 n n 
N1 H1 0OD sing 8 n n 
O1 C1 0OD doub 9 n n 
S1 C5 0OD sing 10 n n 
C2 C4 0OD sing 11 n n 
C2 H2 0OD sing 12 n n 
N2 C4 0OD sing 13 n n 
N2 H3 0OD sing 14 n n 
C3 C2 0OD sing 15 n n 
C3 S1 0OD sing 16 n n 
C3 H4 0OD sing 17 n n 
C3 H5 0OD sing 18 n n 
N3 C10 0OD sing 19 n n 
N3 C11 0OD sing 20 n n 
N3 H6 0OD sing 21 n n 
C4 C5 0OD sing 22 n n 
C4 H7 0OD sing 23 n n 
C5 C6 0OD sing 24 n n 
C5 H8 0OD sing 25 n n 
C6 C7 0OD sing 26 n n 
C6 H9 0OD sing 27 n n 
C6 H10 0OD sing 28 n n 
C7 C8 0OD sing 29 n n 
C7 H11 0OD sing 30 n n 
C7 H12 0OD sing 31 n n 
C8 C9 0OD sing 32 n n 
C8 H13 0OD sing 33 n n 
C8 H14 0OD sing 34 n n 
C9 C10 0OD sing 35 n n 
C9 H15 0OD sing 36 n n 
C9 H16 0OD sing 37 n n 
C10 O2 0OD doub 38 n n 
C11 H17 0OD sing 39 n n 
C11 H18 0OD sing 40 n n 
C12 C11 0OD sing 41 n n 
C12 C13 0OD sing 42 n n 
C12 H19 0OD sing 43 n n 
C12 H20 0OD sing 44 n n 
C13 RH 0OD sing 45 n n 
C13 C17 0OD sing 46 n n 
C14 C13 0OD doub 47 n n 
C14 RH 0OD sing 48 n n 
C14 C15 0OD sing 49 n n 
C15 C19 0OD sing 50 n n 
C15 C16 0OD doub 51 n n 
C16 C20 0OD sing 52 n n 
C17 C16 0OD sing 53 n n 
C17 C21 0OD sing 54 n n 
C18 C14 0OD sing 55 n n 
C18 H21 0OD sing 56 n n 
C18 H22 0OD sing 57 n n 
C18 H23 0OD sing 58 n n 
C19 H24 0OD sing 59 n n 
C19 H25 0OD sing 60 n n 
C19 H26 0OD sing 61 n n 
C20 H27 0OD sing 62 n n 
C20 H28 0OD sing 63 n n 
C20 H29 0OD sing 64 n n 
C21 H30 0OD sing 65 n n 
C21 H31 0OD sing 66 n n 
C21 H32 0OD sing 67 n n 
RH CL2 0OD sing 68 n n 
RH CL3 0OD sing 69 n n 
#
_atom_sites.entry_id                     8OJX 
_atom_sites.fract_transf_matrix[1][1]    0.017376 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017376 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005435 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 0OD A 1 201 201 0OD 0OD . 
C 3 IR A 1 202 1 IR IR . 
D 3 IR A 1 203 2 IR IR . 
E 3 IR A 1 204 3 IR IR . 
F 4 HOH A 1 301 79 HOH HOH . 
F 4 HOH A 2 302 31 HOH HOH . 
F 4 HOH A 3 303 48 HOH HOH . 
F 4 HOH A 4 304 58 HOH HOH . 
F 4 HOH A 5 305 61 HOH HOH . 
F 4 HOH A 6 306 59 HOH HOH . 
F 4 HOH A 7 307 43 HOH HOH . 
F 4 HOH A 8 308 80 HOH HOH . 
F 4 HOH A 9 309 30 HOH HOH . 
F 4 HOH A 10 310 14 HOH HOH . 
F 4 HOH A 11 311 78 HOH HOH . 
F 4 HOH A 12 312 12 HOH HOH . 
F 4 HOH A 13 313 3 HOH HOH . 
F 4 HOH A 14 314 34 HOH HOH . 
F 4 HOH A 15 315 67 HOH HOH . 
F 4 HOH A 16 316 73 HOH HOH . 
F 4 HOH A 17 317 9 HOH HOH . 
F 4 HOH A 18 318 10 HOH HOH . 
F 4 HOH A 19 319 7 HOH HOH . 
F 4 HOH A 20 320 16 HOH HOH . 
F 4 HOH A 21 321 35 HOH HOH . 
F 4 HOH A 22 322 27 HOH HOH . 
F 4 HOH A 23 323 63 HOH HOH . 
F 4 HOH A 24 324 11 HOH HOH . 
F 4 HOH A 25 325 13 HOH HOH . 
F 4 HOH A 26 326 15 HOH HOH . 
F 4 HOH A 27 327 23 HOH HOH . 
F 4 HOH A 28 328 8 HOH HOH . 
F 4 HOH A 29 329 22 HOH HOH . 
F 4 HOH A 30 330 6 HOH HOH . 
F 4 HOH A 31 331 64 HOH HOH . 
F 4 HOH A 32 332 77 HOH HOH . 
F 4 HOH A 33 333 21 HOH HOH . 
F 4 HOH A 34 334 32 HOH HOH . 
F 4 HOH A 35 335 20 HOH HOH . 
F 4 HOH A 36 336 72 HOH HOH . 
F 4 HOH A 37 337 4 HOH HOH . 
F 4 HOH A 38 338 28 HOH HOH . 
F 4 HOH A 39 339 29 HOH HOH . 
F 4 HOH A 40 340 19 HOH HOH . 
F 4 HOH A 41 341 2 HOH HOH . 
F 4 HOH A 42 342 39 HOH HOH . 
F 4 HOH A 43 343 26 HOH HOH . 
F 4 HOH A 44 344 24 HOH HOH . 
F 4 HOH A 45 345 37 HOH HOH . 
F 4 HOH A 46 346 45 HOH HOH . 
F 4 HOH A 47 347 62 HOH HOH . 
F 4 HOH A 48 348 49 HOH HOH . 
F 4 HOH A 49 349 75 HOH HOH . 
F 4 HOH A 50 350 47 HOH HOH . 
F 4 HOH A 51 351 53 HOH HOH . 
F 4 HOH A 52 352 40 HOH HOH . 
F 4 HOH A 53 353 17 HOH HOH . 
F 4 HOH A 54 354 60 HOH HOH . 
F 4 HOH A 55 355 69 HOH HOH . 
F 4 HOH A 56 356 84 HOH HOH . 
F 4 HOH A 57 357 18 HOH HOH . 
F 4 HOH A 58 358 42 HOH HOH . 
F 4 HOH A 59 359 50 HOH HOH . 
F 4 HOH A 60 360 44 HOH HOH . 
F 4 HOH A 61 361 71 HOH HOH . 
F 4 HOH A 62 362 56 HOH HOH . 
F 4 HOH A 63 363 25 HOH HOH . 
F 4 HOH A 64 364 76 HOH HOH . 
F 4 HOH A 65 365 46 HOH HOH . 
F 4 HOH A 66 366 85 HOH HOH . 
F 4 HOH A 67 367 1 HOH HOH . 
F 4 HOH A 68 368 41 HOH HOH . 
F 4 HOH A 69 369 5 HOH HOH . 
F 4 HOH A 70 370 57 HOH HOH . 
F 4 HOH A 71 371 81 HOH HOH . 
F 4 HOH A 72 372 82 HOH HOH . 
F 4 HOH A 73 373 33 HOH HOH . 
F 4 HOH A 74 374 74 HOH HOH . 
F 4 HOH A 75 375 38 HOH HOH . 
F 4 HOH A 76 376 70 HOH HOH . 
F 4 HOH A 77 377 36 HOH HOH . 
F 4 HOH A 78 378 68 HOH HOH . 
F 4 HOH A 79 379 66 HOH HOH . 
F 4 HOH A 80 380 51 HOH HOH . 
F 4 HOH A 81 381 65 HOH HOH . 
F 4 HOH A 82 382 52 HOH HOH . 
F 4 HOH A 83 383 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CL CL1 0OD . . . B 2 25.713 27.185 -19.49 0.7 74.89 ? CL1 0OD 201 A 1 
HETATM 2 RH RH 0OD . . . B 2 24.407 26.572 -17.547 0.7 62.26 1 RH 0OD 201 A 1 
HETATM 3 C C1 0OD . . . B 2 15.472 29.348 -8.469 1 19.93 ? C1 0OD 201 A 1 
HETATM 4 N N1 0OD . . . B 2 16.375 29.471 -7.5 1 21.12 ? N1 0OD 201 A 1 
HETATM 5 O O1 0OD . . . B 2 14.29 29.391 -8.192 1 22.42 ? O1 0OD 201 A 1 
HETATM 6 S S1 0OD . . . B 2 17.919 26.723 -8.571 1 21.53 ? S1 0OD 201 A 1 
HETATM 7 C C2 0OD . . . B 2 17.778 29.396 -8.148 1 20.14 ? C2 0OD 201 A 1 
HETATM 8 N N2 0OD . . . B 2 15.962 29.138 -9.695 1 20.43 ? N2 0OD 201 A 1 
HETATM 9 O O2 0OD . . . B 2 19.817 25.941 -14.896 1 25.9 ? O2 0OD 201 A 1 
HETATM 10 C C3 0OD . . . B 2 18.541 28.12 -7.587 1 21.43 ? C3 0OD 201 A 1 
HETATM 11 N N3 0OD . . . B 2 20.849 23.985 -14.115 1 24.95 ? N3 0OD 201 A 1 
HETATM 12 C C4 0OD . . . B 2 17.49 29.119 -9.687 1 20.01 ? C4 0OD 201 A 1 
HETATM 13 C C5 0OD . . . B 2 18.084 27.78 -10.093 1 21.35 ? C5 0OD 201 A 1 
HETATM 14 C C6 0OD . . . B 2 17.48 27.14 -11.36 1 23.45 ? C6 0OD 201 A 1 
HETATM 15 C C7 0OD . . . B 2 18.302 25.971 -11.911 1 21.86 ? C7 0OD 201 A 1 
HETATM 16 C C8 0OD . . . B 2 17.563 25.371 -13.101 1 23.85 ? C8 0OD 201 A 1 
HETATM 17 C C9 0OD . . . B 2 18.437 24.218 -13.772 1 23.52 ? C9 0OD 201 A 1 
HETATM 18 C C10 0OD . . . B 2 19.777 24.769 -14.316 1 23.84 ? C10 0OD 201 A 1 
HETATM 19 C C11 0OD . . . B 2 22.163 24.618 -14.535 1 36.35 ? C11 0OD 201 A 1 
HETATM 20 C C12 0OD . . . B 2 22.839 24.518 -15.847 1 56.62 ? C12 0OD 201 A 1 
HETATM 21 C C13 0OD . . . B 2 23.986 25.535 -15.774 1 70.01 ? C13 0OD 201 A 1 
HETATM 22 C C14 0OD . . . B 2 23.942 26.966 -15.572 1 71.44 ? C14 0OD 201 A 1 
HETATM 23 C C15 0OD . . . B 2 25.225 27.517 -15.838 1 72.6 ? C15 0OD 201 A 1 
HETATM 24 C C16 0OD . . . B 2 26.073 26.454 -16.228 1 75.87 ? C16 0OD 201 A 1 
HETATM 25 C C17 0OD . . . B 2 25.312 25.254 -16.185 1 67.43 ? C17 0OD 201 A 1 
HETATM 26 C C18 0OD . . . B 2 22.749 27.77 -15.149 1 80.25 ? C18 0OD 201 A 1 
HETATM 27 C C19 0OD . . . B 2 25.653 28.938 -15.592 1 60.41 ? C19 0OD 201 A 1 
HETATM 28 C C20 0OD . . . B 2 27.536 26.508 -16.622 1 78.44 ? C20 0OD 201 A 1 
HETATM 29 C C21 0OD . . . B 2 25.827 23.883 -16.579 1 62.66 ? C21 0OD 201 A 1 
HETATM 30 CL CL2 0OD . . . B 2 24.352 24.569 -18.216 0.7 48.07 ? CL2 0OD 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           30 
#