data_8OJY
#
_model_server_result.job_id            G5ULfOIPIPlNOWPN07hdJg 
_model_server_result.datetime_utc      '2024-11-26 09:45:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ojy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    8OJY 
#
_exptl.entry_id    8OJY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              134.087 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-hydroxybutanedioic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8OJY 
_cell.length_a            241.779 
_cell.length_b            241.779 
_cell.length_c            394.689 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OJY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    'I 4bw 2bw' 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,H,I,J,K,L,W,X 1 1 
A,B,D,E,F,G,H,I,J,K,L,W,X 1 3 
C,M,N,O,P,Q,R,S,T,U,V,Y 2 1 
C,M,N,O,P,Q,R,S,T,U,V,Y 2 2 
C,M,N,O,P,Q,R,S,T,U,V,Y 2 3 
C,M,N,O,P,Q,R,S,T,U,V,Y 2 4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 241.779 241.779 394.689 
3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 241.779 241.779 0 
4 'crystal symmetry operation' 15_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 394.689 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 H N N 
? 2 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 J C1 PEG . B PEG 1003 1_555 K O2 PEG . B PEG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
covale ? covale2 Q C1 PEG . C PEG 1005 1_555 R O2 PEG . C PEG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
covale ? covale3 S C1 PEG . C PEG 1007 1_555 T O1 PEG . C PEG 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
#
_chem_comp.formula           'C4 H6 O5' 
_chem_comp.formula_weight    134.087 
_chem_comp.id                LMR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2-hydroxybutanedioic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     L-Malate 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1A LMR doub 194 n n 
C1 O1B LMR sing 195 n n 
C1 C2 LMR sing 196 n n 
C2 O2 LMR sing 197 n n 
C2 C3 LMR sing 198 n n 
C3 C4 LMR sing 199 n n 
C4 O4A LMR sing 200 n n 
C4 O4B LMR doub 201 n n 
C2 H2 LMR sing 202 n n 
O2 HO2 LMR sing 203 n n 
C3 H3 LMR sing 204 n n 
C3 H3A LMR sing 205 n n 
O1B H4 LMR sing 206 n n 
O4A H5 LMR sing 207 n n 
#
_atom_sites.entry_id                     8OJY 
_atom_sites.fract_transf_matrix[1][1]    0.004136 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004136 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002534 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 LMR A 1 1001 1 LMR LMR . 
E 3 CL A 1 1002 5 CL CL . 
F 4 PEG A 1 1003 11 PEG PEG . 
G 4 PEG A 1 1004 19 PEG PEG . 
H 2 LMR B 1 1001 2 LMR LMR . 
I 3 CL B 1 1002 4 CL CL . 
J 4 PEG B 1 1003 12 PEG PEG . 
K 4 PEG B 1 1004 13 PEG PEG . 
L 4 PEG B 1 1005 14 PEG PEG . 
M 2 LMR C 1 1001 3 LMR LMR . 
N 3 CL C 1 1002 6 CL CL . 
O 3 CL C 1 1003 7 CL CL . 
P 3 CL C 1 1004 8 CL CL . 
Q 4 PEG C 1 1005 9 PEG PEG . 
R 4 PEG C 1 1006 10 PEG PEG . 
S 4 PEG C 1 1007 15 PEG PEG . 
T 4 PEG C 1 1008 16 PEG PEG . 
U 4 PEG C 1 1009 17 PEG PEG . 
V 4 PEG C 1 1010 18 PEG PEG . 
W 5 HOH A 1 1101 71 HOH HOH . 
W 5 HOH A 2 1102 35 HOH HOH . 
W 5 HOH A 3 1103 31 HOH HOH . 
W 5 HOH A 4 1104 139 HOH HOH . 
W 5 HOH A 5 1105 33 HOH HOH . 
W 5 HOH A 6 1106 23 HOH HOH . 
W 5 HOH A 7 1107 29 HOH HOH . 
W 5 HOH A 8 1108 123 HOH HOH . 
W 5 HOH A 9 1109 125 HOH HOH . 
W 5 HOH A 10 1110 122 HOH HOH . 
W 5 HOH A 11 1111 43 HOH HOH . 
W 5 HOH A 12 1112 38 HOH HOH . 
W 5 HOH A 13 1113 36 HOH HOH . 
W 5 HOH A 14 1114 32 HOH HOH . 
W 5 HOH A 15 1115 21 HOH HOH . 
W 5 HOH A 16 1116 137 HOH HOH . 
W 5 HOH A 17 1117 24 HOH HOH . 
W 5 HOH A 18 1118 97 HOH HOH . 
W 5 HOH A 19 1119 106 HOH HOH . 
W 5 HOH A 20 1120 117 HOH HOH . 
W 5 HOH A 21 1121 119 HOH HOH . 
W 5 HOH A 22 1122 118 HOH HOH . 
W 5 HOH A 23 1123 115 HOH HOH . 
W 5 HOH A 24 1124 113 HOH HOH . 
W 5 HOH A 25 1125 153 HOH HOH . 
W 5 HOH A 26 1126 30 HOH HOH . 
W 5 HOH A 27 1127 114 HOH HOH . 
W 5 HOH A 28 1128 124 HOH HOH . 
W 5 HOH A 29 1129 152 HOH HOH . 
W 5 HOH A 30 1130 26 HOH HOH . 
W 5 HOH A 31 1131 111 HOH HOH . 
W 5 HOH A 32 1132 151 HOH HOH . 
W 5 HOH A 33 1133 150 HOH HOH . 
W 5 HOH A 34 1134 149 HOH HOH . 
W 5 HOH A 35 1135 34 HOH HOH . 
W 5 HOH A 36 1136 74 HOH HOH . 
W 5 HOH A 37 1137 50 HOH HOH . 
W 5 HOH A 38 1138 25 HOH HOH . 
W 5 HOH A 39 1139 112 HOH HOH . 
W 5 HOH A 40 1140 138 HOH HOH . 
X 5 HOH B 1 1101 145 HOH HOH . 
X 5 HOH B 2 1102 132 HOH HOH . 
X 5 HOH B 3 1103 102 HOH HOH . 
X 5 HOH B 4 1104 37 HOH HOH . 
X 5 HOH B 5 1105 42 HOH HOH . 
X 5 HOH B 6 1106 85 HOH HOH . 
X 5 HOH B 7 1107 75 HOH HOH . 
X 5 HOH B 8 1108 22 HOH HOH . 
X 5 HOH B 9 1109 44 HOH HOH . 
X 5 HOH B 10 1110 73 HOH HOH . 
X 5 HOH B 11 1111 148 HOH HOH . 
X 5 HOH B 12 1112 39 HOH HOH . 
X 5 HOH B 13 1113 143 HOH HOH . 
X 5 HOH B 14 1114 146 HOH HOH . 
X 5 HOH B 15 1115 135 HOH HOH . 
X 5 HOH B 16 1116 45 HOH HOH . 
X 5 HOH B 17 1117 27 HOH HOH . 
X 5 HOH B 18 1118 136 HOH HOH . 
X 5 HOH B 19 1119 147 HOH HOH . 
X 5 HOH B 20 1120 40 HOH HOH . 
X 5 HOH B 21 1121 62 HOH HOH . 
X 5 HOH B 22 1122 133 HOH HOH . 
X 5 HOH B 23 1123 128 HOH HOH . 
X 5 HOH B 24 1124 130 HOH HOH . 
X 5 HOH B 25 1125 134 HOH HOH . 
X 5 HOH B 26 1126 127 HOH HOH . 
X 5 HOH B 27 1127 116 HOH HOH . 
X 5 HOH B 28 1128 131 HOH HOH . 
Y 5 HOH C 1 1101 79 HOH HOH . 
Y 5 HOH C 2 1102 41 HOH HOH . 
Y 5 HOH C 3 1103 108 HOH HOH . 
Y 5 HOH C 4 1104 60 HOH HOH . 
Y 5 HOH C 5 1105 110 HOH HOH . 
Y 5 HOH C 6 1106 126 HOH HOH . 
Y 5 HOH C 7 1107 52 HOH HOH . 
Y 5 HOH C 8 1108 80 HOH HOH . 
Y 5 HOH C 9 1109 65 HOH HOH . 
Y 5 HOH C 10 1110 64 HOH HOH . 
Y 5 HOH C 11 1111 76 HOH HOH . 
Y 5 HOH C 12 1112 87 HOH HOH . 
Y 5 HOH C 13 1113 88 HOH HOH . 
Y 5 HOH C 14 1114 61 HOH HOH . 
Y 5 HOH C 15 1115 63 HOH HOH . 
Y 5 HOH C 16 1116 129 HOH HOH . 
Y 5 HOH C 17 1117 55 HOH HOH . 
Y 5 HOH C 18 1118 78 HOH HOH . 
Y 5 HOH C 19 1119 83 HOH HOH . 
Y 5 HOH C 20 1120 107 HOH HOH . 
Y 5 HOH C 21 1121 47 HOH HOH . 
Y 5 HOH C 22 1122 86 HOH HOH . 
Y 5 HOH C 23 1123 91 HOH HOH . 
Y 5 HOH C 24 1124 68 HOH HOH . 
Y 5 HOH C 25 1125 77 HOH HOH . 
Y 5 HOH C 26 1126 96 HOH HOH . 
Y 5 HOH C 27 1127 81 HOH HOH . 
Y 5 HOH C 28 1128 90 HOH HOH . 
Y 5 HOH C 29 1129 99 HOH HOH . 
Y 5 HOH C 30 1130 48 HOH HOH . 
Y 5 HOH C 31 1131 94 HOH HOH . 
Y 5 HOH C 32 1132 121 HOH HOH . 
Y 5 HOH C 33 1133 104 HOH HOH . 
Y 5 HOH C 34 1134 100 HOH HOH . 
Y 5 HOH C 35 1135 89 HOH HOH . 
Y 5 HOH C 36 1136 28 HOH HOH . 
Y 5 HOH C 37 1137 20 HOH HOH . 
Y 5 HOH C 38 1138 144 HOH HOH . 
Y 5 HOH C 39 1139 46 HOH HOH . 
Y 5 HOH C 40 1140 93 HOH HOH . 
Y 5 HOH C 41 1141 120 HOH HOH . 
Y 5 HOH C 42 1142 103 HOH HOH . 
Y 5 HOH C 43 1143 69 HOH HOH . 
Y 5 HOH C 44 1144 72 HOH HOH . 
Y 5 HOH C 45 1145 109 HOH HOH . 
Y 5 HOH C 46 1146 70 HOH HOH . 
Y 5 HOH C 47 1147 98 HOH HOH . 
Y 5 HOH C 48 1148 59 HOH HOH . 
Y 5 HOH C 49 1149 84 HOH HOH . 
Y 5 HOH C 50 1150 54 HOH HOH . 
Y 5 HOH C 51 1151 101 HOH HOH . 
Y 5 HOH C 52 1152 57 HOH HOH . 
Y 5 HOH C 53 1153 49 HOH HOH . 
Y 5 HOH C 54 1154 67 HOH HOH . 
Y 5 HOH C 55 1155 56 HOH HOH . 
Y 5 HOH C 56 1156 92 HOH HOH . 
Y 5 HOH C 57 1157 53 HOH HOH . 
Y 5 HOH C 58 1158 51 HOH HOH . 
Y 5 HOH C 59 1159 95 HOH HOH . 
Y 5 HOH C 60 1160 66 HOH HOH . 
Y 5 HOH C 61 1161 105 HOH HOH . 
Y 5 HOH C 62 1162 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LMR . . . D 2 77.176 95.496 288.654 1 86.15 ? C1 LMR 1001 A 1 
HETATM 2 O O1A LMR . . . D 2 77.7 95.959 287.598 1 86.38 ? O1A LMR 1001 A 1 
HETATM 3 O O1B LMR . . . D 2 76.688 94.319 288.676 1 82.55 ? O1B LMR 1001 A 1 
HETATM 4 C C2 LMR . . . D 2 77.163 96.347 289.871 1 81.06 ? C2 LMR 1001 A 1 
HETATM 5 O O2 LMR . . . D 2 78.353 97.176 289.882 1 82.61 ? O2 LMR 1001 A 1 
HETATM 6 C C3 LMR . . . D 2 75.877 97.189 289.941 1 77.99 ? C3 LMR 1001 A 1 
HETATM 7 C C4 LMR . . . D 2 75.763 97.939 291.267 1 81.9 ? C4 LMR 1001 A 1 
HETATM 8 O O4A LMR . . . D 2 75.927 97.33 292.362 1 82.44 ? O4A LMR 1001 A 1 
HETATM 9 O O4B LMR . . . D 2 75.494 99.193 291.266 1 72.6 ? O4B LMR 1001 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    183 
_model_server_stats.query_time_ms           368 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           9 
#