data_8OK8 # _model_server_result.job_id j0DqcUtESTTlZeWjzrl6jg _model_server_result.datetime_utc '2024-10-25 20:25:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ok8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":403}' # _entry.id 8OK8 # _exptl.entry_id 8OK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-glucopyranose _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.65 _cell.angle_gamma 90 _cell.entry_id 8OK8 _cell.length_a 86.28 _cell.length_b 111.23 _cell.length_c 108.59 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,H,I,J,K,L,M,N,W,X 1 1 D,E,F,G,O,P,Q,R,S,T,U,V,Y,Z,AA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 U N N ? 4 V N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n G NAG 1 J 1 NAG J 1 NAG 2 n G NAG 2 J 2 NAG J 2 NAG 2 n H NAG 1 F 1 NAG F 1 NAG 2 n H NAG 2 F 2 NAG F 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 32 A CYS 32 1_555 A SG CYS 238 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 159 A CYS 159 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 179 A CYS 179 1_555 A SG CYS 197 A CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 199 A CYS 199 1_555 A SG CYS 208 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 32 C CYS 32 1_555 B SG CYS 238 C CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 B SG CYS 159 C CYS 159 1_555 B SG CYS 164 C CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 B SG CYS 179 C CYS 179 1_555 B SG CYS 197 C CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf8 B SG CYS 199 C CYS 199 1_555 B SG CYS 208 C CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 287 C CYS 287 1_555 B SG CYS 296 C CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf10 C SG CYS 32 E CYS 32 1_555 C SG CYS 238 E CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf11 C SG CYS 159 E CYS 159 1_555 C SG CYS 164 E CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf12 C SG CYS 179 E CYS 179 1_555 C SG CYS 197 E CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf13 C SG CYS 199 E CYS 199 1_555 C SG CYS 208 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf14 C SG CYS 287 E CYS 287 1_555 C SG CYS 296 E CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf15 D SG CYS 32 G CYS 32 1_555 D SG CYS 238 G CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf16 D SG CYS 159 G CYS 159 1_555 D SG CYS 164 G CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf17 D SG CYS 179 G CYS 179 1_555 D SG CYS 197 G CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf18 D SG CYS 199 G CYS 199 1_555 D SG CYS 208 G CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf19 D SG CYS 287 G CYS 287 1_555 D SG CYS 296 G CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf20 E SG CYS 32 I CYS 32 1_555 E SG CYS 238 I CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf21 E SG CYS 159 I CYS 159 1_555 E SG CYS 164 I CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf22 E SG CYS 179 I CYS 179 1_555 E SG CYS 197 I CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf23 E SG CYS 199 I CYS 199 1_555 E SG CYS 208 I CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf24 E SG CYS 287 I CYS 287 1_555 E SG CYS 296 I CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf25 F SG CYS 32 K CYS 32 1_555 F SG CYS 238 K CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf26 F SG CYS 159 K CYS 159 1_555 F SG CYS 164 K CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf27 F SG CYS 179 K CYS 179 1_555 F SG CYS 197 K CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf28 F SG CYS 199 K CYS 199 1_555 F SG CYS 208 K CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf29 F SG CYS 287 K CYS 287 1_555 F SG CYS 296 K CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 131 A ASN 131 1_555 I C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 B ND2 ASN 131 C ASN 131 1_555 J C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 B OG SER 292 C SER 292 1_555 K C1 GLC . C GLC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale4 B OG SER 293 C SER 293 1_555 L C1 GLC . C GLC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? covale ? covale5 C ND2 ASN 131 E ASN 131 1_555 H C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale6 C OG SER 292 E SER 292 1_555 M C1 GLC . E GLC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale7 C OG SER 293 E SER 293 1_555 N C1 GLC . E GLC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale8 D ND2 ASN 131 G ASN 131 1_555 O C1 NAG . G NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 D OG SER 292 G SER 292 1_555 P C1 GLC . G GLC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? covale ? covale10 D OG SER 293 G SER 293 1_555 Q C1 GLC . G GLC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? covale ? covale11 E ND2 ASN 131 I ASN 131 1_555 G C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale12 E OG SER 292 I SER 292 1_555 R C1 GLC . I GLC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale13 E OG SER 293 I SER 293 1_555 S C1 GLC . I GLC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.206 ? covale ? covale14 F ND2 ASN 131 K ASN 131 1_555 T C1 NAG . K NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale15 F OG SER 292 K SER 292 1_555 U C1 GLC . K GLC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? covale ? covale16 F OG SER 293 K SER 293 1_555 V C1 GLC . K GLC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale17 G O4 NAG . J NAG 1 1_555 G C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale18 H O4 NAG . F NAG 1 1_555 H C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLC sing 83 n n C1 O1 GLC sing 84 n n C1 O5 GLC sing 85 n n C1 H1 GLC sing 86 n n C2 C3 GLC sing 87 n n C2 O2 GLC sing 88 n n C2 H2 GLC sing 89 n n C3 C4 GLC sing 90 n n C3 O3 GLC sing 91 n n C3 H3 GLC sing 92 n n C4 C5 GLC sing 93 n n C4 O4 GLC sing 94 n n C4 H4 GLC sing 95 n n C5 C6 GLC sing 96 n n C5 O5 GLC sing 97 n n C5 H5 GLC sing 98 n n C6 O6 GLC sing 99 n n C6 H61 GLC sing 100 n n C6 H62 GLC sing 101 n n O1 HO1 GLC sing 102 n n O2 HO2 GLC sing 103 n n O3 HO3 GLC sing 104 n n O4 HO4 GLC sing 105 n n O6 HO6 GLC sing 106 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLC a-D-glucopyranose 'COMMON NAME' GMML 1 GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8OK8 _atom_sites.fract_transf_matrix[1][1] 0.01159 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000334 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009213 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 NAG A 1 401 1 NAG NAG . J 3 NAG C 1 401 1 NAG NAG . K 4 GLC C 1 402 21 GLC GLC . L 4 GLC C 1 403 22 GLC GLC . M 4 GLC E 1 401 21 GLC GLC . N 4 GLC E 1 402 22 GLC GLC . O 3 NAG G 1 401 1 NAG NAG . P 4 GLC G 1 402 21 GLC GLC . Q 4 GLC G 1 403 22 GLC GLC . R 4 GLC I 1 401 21 GLC GLC . S 4 GLC I 1 402 22 GLC GLC . T 3 NAG K 1 401 1 NAG NAG . U 4 GLC K 1 402 21 GLC GLC . V 4 GLC K 1 403 22 GLC GLC . W 5 HOH C 1 501 15 HOH HOH . W 5 HOH C 2 502 8 HOH HOH . X 5 HOH E 1 501 7 HOH HOH . Y 5 HOH G 1 501 1 HOH HOH . Y 5 HOH G 2 502 4 HOH HOH . Z 5 HOH I 1 501 10 HOH HOH . Z 5 HOH I 2 502 9 HOH HOH . Z 5 HOH I 3 503 5 HOH HOH . AA 5 HOH K 1 501 14 HOH HOH . AA 5 HOH K 2 502 12 HOH HOH . AA 5 HOH K 3 503 11 HOH HOH . AA 5 HOH K 4 504 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLC . . . Q 4 -44.881 -10.275 38.794 1 95.8 ? C1 GLC 403 G 1 HETATM 2 C C2 GLC . . . Q 4 -43.967 -9.301 39.54 1 95.8 ? C2 GLC 403 G 1 HETATM 3 C C3 GLC . . . Q 4 -43.388 -9.943 40.761 1 95.8 ? C3 GLC 403 G 1 HETATM 4 C C4 GLC . . . Q 4 -44.472 -10.491 41.632 1 95.8 ? C4 GLC 403 G 1 HETATM 5 C C5 GLC . . . Q 4 -45.362 -11.447 40.849 1 95.8 ? C5 GLC 403 G 1 HETATM 6 C C6 GLC . . . Q 4 -46.492 -11.98 41.72 1 95.8 ? C6 GLC 403 G 1 HETATM 7 O O2 GLC . . . Q 4 -42.906 -8.878 38.672 1 95.8 ? O2 GLC 403 G 1 HETATM 8 O O3 GLC . . . Q 4 -42.629 -8.975 41.496 1 95.8 ? O3 GLC 403 G 1 HETATM 9 O O4 GLC . . . Q 4 -43.888 -11.183 42.74 1 95.8 ? O4 GLC 403 G 1 HETATM 10 O O5 GLC . . . Q 4 -45.921 -10.756 39.698 1 95.8 ? O5 GLC 403 G 1 HETATM 11 O O6 GLC . . . Q 4 -47.23 -12.971 40.992 1 95.8 ? O6 GLC 403 G 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #