data_8OK9 # _model_server_result.job_id 3pFqk0_BZbajBHoCT7FEIA _model_server_result.datetime_utc '2024-11-06 00:37:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ok9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":506}' # _entry.id 8OK9 # _exptl.entry_id 8OK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OK9 _cell.length_a 81.714 _cell.length_b 105.893 _cell.length_c 144.347 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 N N N ? 5 O N N ? 5 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 173 A GLN 159 1_555 E MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc2 A O LEU 441 A LEU 427 1_555 E MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc3 A OXT LEU 441 A LEU 427 1_555 E MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc4 E MG MG . A MG 501 1_555 C OP3 DA 1 R DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc5 E MG MG . A MG 501 1_555 C OP1 DA 1 R DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc6 E MG MG . A MG 501 1_555 C OP1 DC 3 R DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? hydrog WATSON-CRICK hydrog1 C N3 DT 2 R DT 2 1_555 D N1 DA 5 S DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C O4 DT 2 R DT 2 1_555 D N6 DA 5 S DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C N3 DC 3 R DC 3 1_555 D N1 DG 4 S DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N4 DC 3 R DC 3 1_555 D O6 DG 4 S DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C O2 DC 3 R DC 3 1_555 D N2 DG 4 S DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N1 DG 4 R DG 4 1_555 D N3 DC 3 S DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N2 DG 4 R DG 4 1_555 D O2 DC 3 S DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C O6 DG 4 R DG 4 1_555 D N4 DC 3 S DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog9 D N6 DA 8 S DA 8 1_555 D N3 DG 15 S DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog10 D N7 DA 8 S DA 8 1_555 D N2 DG 15 S DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 D N1 DG 9 S DG 9 1_555 D N3 DC 14 S DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 D N2 DG 9 S DG 9 1_555 D O2 DC 14 S DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 D O6 DG 9 S DG 9 1_555 D N4 DC 14 S DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_10_PAIR hydrog14 D N2 DG 10 S DG 10 1_555 D N1 DA 13 S DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_10_PAIR hydrog15 D N3 DG 10 S DG 10 1_555 D N6 DA 13 S DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 8OK9 _atom_sites.fract_transf_matrix[1][1] 0.012238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MG A 1 501 1 MG MG . F 5 ACY A 1 502 3 ACY ACY . G 5 ACY A 1 503 4 ACY ACY . H 5 ACY A 1 504 5 ACY ACY . I 5 ACY A 1 505 6 ACY ACY . J 5 ACY A 1 506 7 ACY ACY . K 6 EDO A 1 507 2 EDO EDO . L 6 EDO A 1 508 3 EDO EDO . M 6 EDO A 1 509 5 EDO EDO . N 5 ACY C 1 301 2 ACY ACY . O 5 ACY C 1 302 8 ACY ACY . P 6 EDO C 1 303 6 EDO EDO . Q 7 PEG C 1 304 1 PEG PEG . R 5 ACY S 1 101 1 ACY ACY . S 6 EDO S 1 102 1 EDO EDO . T 6 EDO S 1 103 4 EDO EDO . U 8 HOH A 1 601 27 HOH HOH . U 8 HOH A 2 602 146 HOH HOH . U 8 HOH A 3 603 193 HOH HOH . U 8 HOH A 4 604 32 HOH HOH . U 8 HOH A 5 605 35 HOH HOH . U 8 HOH A 6 606 153 HOH HOH . U 8 HOH A 7 607 105 HOH HOH . U 8 HOH A 8 608 119 HOH HOH . U 8 HOH A 9 609 150 HOH HOH . U 8 HOH A 10 610 76 HOH HOH . U 8 HOH A 11 611 145 HOH HOH . U 8 HOH A 12 612 136 HOH HOH . U 8 HOH A 13 613 39 HOH HOH . U 8 HOH A 14 614 171 HOH HOH . U 8 HOH A 15 615 44 HOH HOH . U 8 HOH A 16 616 108 HOH HOH . U 8 HOH A 17 617 78 HOH HOH . U 8 HOH A 18 618 2 HOH HOH . U 8 HOH A 19 619 11 HOH HOH . U 8 HOH A 20 620 43 HOH HOH . U 8 HOH A 21 621 68 HOH HOH . U 8 HOH A 22 622 154 HOH HOH . U 8 HOH A 23 623 96 HOH HOH . U 8 HOH A 24 624 12 HOH HOH . U 8 HOH A 25 625 36 HOH HOH . U 8 HOH A 26 626 56 HOH HOH . U 8 HOH A 27 627 57 HOH HOH . U 8 HOH A 28 628 52 HOH HOH . U 8 HOH A 29 629 10 HOH HOH . U 8 HOH A 30 630 79 HOH HOH . U 8 HOH A 31 631 75 HOH HOH . U 8 HOH A 32 632 197 HOH HOH . U 8 HOH A 33 633 170 HOH HOH . U 8 HOH A 34 634 69 HOH HOH . U 8 HOH A 35 635 77 HOH HOH . U 8 HOH A 36 636 91 HOH HOH . U 8 HOH A 37 637 16 HOH HOH . U 8 HOH A 38 638 37 HOH HOH . U 8 HOH A 39 639 38 HOH HOH . U 8 HOH A 40 640 143 HOH HOH . U 8 HOH A 41 641 113 HOH HOH . U 8 HOH A 42 642 14 HOH HOH . U 8 HOH A 43 643 159 HOH HOH . U 8 HOH A 44 644 61 HOH HOH . U 8 HOH A 45 645 131 HOH HOH . U 8 HOH A 46 646 128 HOH HOH . U 8 HOH A 47 647 25 HOH HOH . U 8 HOH A 48 648 65 HOH HOH . U 8 HOH A 49 649 70 HOH HOH . U 8 HOH A 50 650 98 HOH HOH . U 8 HOH A 51 651 129 HOH HOH . U 8 HOH A 52 652 29 HOH HOH . U 8 HOH A 53 653 137 HOH HOH . U 8 HOH A 54 654 100 HOH HOH . U 8 HOH A 55 655 49 HOH HOH . U 8 HOH A 56 656 149 HOH HOH . U 8 HOH A 57 657 158 HOH HOH . U 8 HOH A 58 658 72 HOH HOH . U 8 HOH A 59 659 180 HOH HOH . U 8 HOH A 60 660 23 HOH HOH . U 8 HOH A 61 661 177 HOH HOH . U 8 HOH A 62 662 60 HOH HOH . U 8 HOH A 63 663 103 HOH HOH . U 8 HOH A 64 664 176 HOH HOH . U 8 HOH A 65 665 80 HOH HOH . U 8 HOH A 66 666 156 HOH HOH . U 8 HOH A 67 667 144 HOH HOH . U 8 HOH A 68 668 116 HOH HOH . U 8 HOH A 69 669 111 HOH HOH . U 8 HOH A 70 670 1 HOH HOH . U 8 HOH A 71 671 132 HOH HOH . U 8 HOH A 72 672 41 HOH HOH . U 8 HOH A 73 673 24 HOH HOH . U 8 HOH A 74 674 123 HOH HOH . U 8 HOH A 75 675 15 HOH HOH . U 8 HOH A 76 676 141 HOH HOH . U 8 HOH A 77 677 179 HOH HOH . U 8 HOH A 78 678 151 HOH HOH . U 8 HOH A 79 679 181 HOH HOH . U 8 HOH A 80 680 22 HOH HOH . U 8 HOH A 81 681 26 HOH HOH . U 8 HOH A 82 682 147 HOH HOH . U 8 HOH A 83 683 140 HOH HOH . U 8 HOH A 84 684 130 HOH HOH . U 8 HOH A 85 685 112 HOH HOH . U 8 HOH A 86 686 3 HOH HOH . U 8 HOH A 87 687 192 HOH HOH . U 8 HOH A 88 688 48 HOH HOH . U 8 HOH A 89 689 28 HOH HOH . U 8 HOH A 90 690 138 HOH HOH . U 8 HOH A 91 691 178 HOH HOH . U 8 HOH A 92 692 54 HOH HOH . U 8 HOH A 93 693 114 HOH HOH . U 8 HOH A 94 694 155 HOH HOH . U 8 HOH A 95 695 40 HOH HOH . U 8 HOH A 96 696 104 HOH HOH . U 8 HOH A 97 697 162 HOH HOH . U 8 HOH A 98 698 62 HOH HOH . U 8 HOH A 99 699 95 HOH HOH . U 8 HOH A 100 700 194 HOH HOH . U 8 HOH A 101 701 187 HOH HOH . U 8 HOH A 102 702 71 HOH HOH . U 8 HOH A 103 703 53 HOH HOH . U 8 HOH A 104 704 30 HOH HOH . U 8 HOH A 105 705 148 HOH HOH . U 8 HOH A 106 706 182 HOH HOH . U 8 HOH A 107 707 51 HOH HOH . U 8 HOH A 108 708 183 HOH HOH . U 8 HOH A 109 709 63 HOH HOH . U 8 HOH A 110 710 90 HOH HOH . U 8 HOH A 111 711 101 HOH HOH . U 8 HOH A 112 712 115 HOH HOH . U 8 HOH A 113 713 191 HOH HOH . U 8 HOH A 114 714 34 HOH HOH . U 8 HOH A 115 715 188 HOH HOH . U 8 HOH A 116 716 94 HOH HOH . U 8 HOH A 117 717 99 HOH HOH . U 8 HOH A 118 718 127 HOH HOH . U 8 HOH A 119 719 89 HOH HOH . V 8 HOH C 1 401 139 HOH HOH . V 8 HOH C 2 402 73 HOH HOH . V 8 HOH C 3 403 173 HOH HOH . V 8 HOH C 4 404 83 HOH HOH . V 8 HOH C 5 405 19 HOH HOH . V 8 HOH C 6 406 107 HOH HOH . V 8 HOH C 7 407 59 HOH HOH . V 8 HOH C 8 408 31 HOH HOH . V 8 HOH C 9 409 92 HOH HOH . V 8 HOH C 10 410 163 HOH HOH . V 8 HOH C 11 411 106 HOH HOH . V 8 HOH C 12 412 198 HOH HOH . V 8 HOH C 13 413 121 HOH HOH . V 8 HOH C 14 414 46 HOH HOH . V 8 HOH C 15 415 64 HOH HOH . V 8 HOH C 16 416 47 HOH HOH . V 8 HOH C 17 417 110 HOH HOH . V 8 HOH C 18 418 124 HOH HOH . V 8 HOH C 19 419 122 HOH HOH . V 8 HOH C 20 420 165 HOH HOH . V 8 HOH C 21 421 157 HOH HOH . V 8 HOH C 22 422 33 HOH HOH . V 8 HOH C 23 423 9 HOH HOH . V 8 HOH C 24 424 93 HOH HOH . V 8 HOH C 25 425 172 HOH HOH . V 8 HOH C 26 426 88 HOH HOH . V 8 HOH C 27 427 6 HOH HOH . V 8 HOH C 28 428 82 HOH HOH . V 8 HOH C 29 429 164 HOH HOH . V 8 HOH C 30 430 4 HOH HOH . V 8 HOH C 31 431 166 HOH HOH . V 8 HOH C 32 432 118 HOH HOH . V 8 HOH C 33 433 84 HOH HOH . V 8 HOH C 34 434 45 HOH HOH . V 8 HOH C 35 435 7 HOH HOH . V 8 HOH C 36 436 125 HOH HOH . V 8 HOH C 37 437 58 HOH HOH . V 8 HOH C 38 438 5 HOH HOH . V 8 HOH C 39 439 81 HOH HOH . V 8 HOH C 40 440 74 HOH HOH . V 8 HOH C 41 441 85 HOH HOH . V 8 HOH C 42 442 168 HOH HOH . V 8 HOH C 43 443 8 HOH HOH . V 8 HOH C 44 444 50 HOH HOH . V 8 HOH C 45 445 196 HOH HOH . V 8 HOH C 46 446 184 HOH HOH . V 8 HOH C 47 447 175 HOH HOH . V 8 HOH C 48 448 161 HOH HOH . V 8 HOH C 49 449 21 HOH HOH . V 8 HOH C 50 450 120 HOH HOH . V 8 HOH C 51 451 135 HOH HOH . V 8 HOH C 52 452 126 HOH HOH . V 8 HOH C 53 453 200 HOH HOH . V 8 HOH C 54 454 160 HOH HOH . V 8 HOH C 55 455 86 HOH HOH . V 8 HOH C 56 456 87 HOH HOH . V 8 HOH C 57 457 117 HOH HOH . V 8 HOH C 58 458 199 HOH HOH . W 8 HOH R 1 101 67 HOH HOH . W 8 HOH R 2 102 189 HOH HOH . W 8 HOH R 3 103 152 HOH HOH . W 8 HOH R 4 104 13 HOH HOH . W 8 HOH R 5 105 66 HOH HOH . W 8 HOH R 6 106 55 HOH HOH . W 8 HOH R 7 107 20 HOH HOH . W 8 HOH R 8 108 169 HOH HOH . W 8 HOH R 9 109 195 HOH HOH . X 8 HOH S 1 201 133 HOH HOH . X 8 HOH S 2 202 42 HOH HOH . X 8 HOH S 3 203 109 HOH HOH . X 8 HOH S 4 204 185 HOH HOH . X 8 HOH S 5 205 97 HOH HOH . X 8 HOH S 6 206 186 HOH HOH . X 8 HOH S 7 207 174 HOH HOH . X 8 HOH S 8 208 17 HOH HOH . X 8 HOH S 9 209 167 HOH HOH . X 8 HOH S 10 210 134 HOH HOH . X 8 HOH S 11 211 102 HOH HOH . X 8 HOH S 12 212 18 HOH HOH . X 8 HOH S 13 213 142 HOH HOH . X 8 HOH S 14 214 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . J 5 49.874 20.319 17.508 1 67.6 ? C ACY 506 A 1 HETATM 2 O O ACY . . . J 5 48.641 20.212 17.646 1 63.33 ? O ACY 506 A 1 HETATM 3 O OXT ACY . . . J 5 50.653 20.61 18.434 1 58.05 ? OXT ACY 506 A 1 HETATM 4 C CH3 ACY . . . J 5 50.468 20.08 16.119 1 58.13 ? CH3 ACY 506 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #