data_8OKF # _model_server_result.job_id ST9DeF-oRIbrxxFTp3qh1w _model_server_result.datetime_utc '2024-10-10 01:24:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8okf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 8OKF # _exptl.entry_id 8OKF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OKF _cell.length_a 78.152 _cell.length_b 78.152 _cell.length_c 101.748 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 20 n n OH2 HO2 1PE sing 21 n n C12 C22 1PE sing 22 n n C12 H121 1PE sing 23 n n C12 H122 1PE sing 24 n n C22 OH3 1PE sing 25 n n C22 H221 1PE sing 26 n n C22 H222 1PE sing 27 n n OH3 C23 1PE sing 28 n n C13 C23 1PE sing 29 n n C13 OH4 1PE sing 30 n n C13 H131 1PE sing 31 n n C13 H132 1PE sing 32 n n C23 H231 1PE sing 33 n n C23 H232 1PE sing 34 n n OH4 C24 1PE sing 35 n n C14 C24 1PE sing 36 n n C14 OH5 1PE sing 37 n n C14 H141 1PE sing 38 n n C14 H142 1PE sing 39 n n C24 H241 1PE sing 40 n n C24 H242 1PE sing 41 n n OH5 C25 1PE sing 42 n n C15 C25 1PE sing 43 n n C15 OH6 1PE sing 44 n n C15 H151 1PE sing 45 n n C15 H152 1PE sing 46 n n C25 H251 1PE sing 47 n n C25 H252 1PE sing 48 n n OH6 C26 1PE sing 49 n n C16 C26 1PE sing 50 n n C16 OH7 1PE sing 51 n n C16 H161 1PE sing 52 n n C16 H162 1PE sing 53 n n C26 H261 1PE sing 54 n n C26 H262 1PE sing 55 n n OH7 HO7 1PE sing 56 n n # _atom_sites.entry_id 8OKF _atom_sites.fract_transf_matrix[1][1] 0.012796 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012796 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 144 A 1 401 1 144 144 . D 3 144 A 1 402 2 144 144 . E 4 CL A 1 403 1 CL CL . F 4 CL A 1 404 3 CL CL . G 5 1PE A 1 405 1 1PE 1PE . H 6 HOH A 1 501 66 HOH HOH . H 6 HOH A 2 502 89 HOH HOH . H 6 HOH A 3 503 52 HOH HOH . H 6 HOH A 4 504 79 HOH HOH . H 6 HOH A 5 505 22 HOH HOH . H 6 HOH A 6 506 7 HOH HOH . H 6 HOH A 7 507 76 HOH HOH . H 6 HOH A 8 508 25 HOH HOH . H 6 HOH A 9 509 72 HOH HOH . H 6 HOH A 10 510 4 HOH HOH . H 6 HOH A 11 511 71 HOH HOH . H 6 HOH A 12 512 18 HOH HOH . H 6 HOH A 13 513 105 HOH HOH . H 6 HOH A 14 514 64 HOH HOH . H 6 HOH A 15 515 19 HOH HOH . H 6 HOH A 16 516 61 HOH HOH . H 6 HOH A 17 517 95 HOH HOH . H 6 HOH A 18 518 96 HOH HOH . H 6 HOH A 19 519 12 HOH HOH . H 6 HOH A 20 520 57 HOH HOH . H 6 HOH A 21 521 40 HOH HOH . H 6 HOH A 22 522 99 HOH HOH . H 6 HOH A 23 523 37 HOH HOH . H 6 HOH A 24 524 87 HOH HOH . H 6 HOH A 25 525 44 HOH HOH . H 6 HOH A 26 526 53 HOH HOH . H 6 HOH A 27 527 77 HOH HOH . H 6 HOH A 28 528 69 HOH HOH . H 6 HOH A 29 529 39 HOH HOH . H 6 HOH A 30 530 13 HOH HOH . H 6 HOH A 31 531 3 HOH HOH . H 6 HOH A 32 532 67 HOH HOH . H 6 HOH A 33 533 35 HOH HOH . H 6 HOH A 34 534 82 HOH HOH . H 6 HOH A 35 535 58 HOH HOH . H 6 HOH A 36 536 48 HOH HOH . H 6 HOH A 37 537 34 HOH HOH . H 6 HOH A 38 538 83 HOH HOH . H 6 HOH A 39 539 14 HOH HOH . H 6 HOH A 40 540 20 HOH HOH . H 6 HOH A 41 541 9 HOH HOH . H 6 HOH A 42 542 93 HOH HOH . H 6 HOH A 43 543 33 HOH HOH . H 6 HOH A 44 544 54 HOH HOH . H 6 HOH A 45 545 23 HOH HOH . H 6 HOH A 46 546 51 HOH HOH . H 6 HOH A 47 547 24 HOH HOH . H 6 HOH A 48 548 62 HOH HOH . H 6 HOH A 49 549 78 HOH HOH . H 6 HOH A 50 550 38 HOH HOH . H 6 HOH A 51 551 84 HOH HOH . H 6 HOH A 52 552 43 HOH HOH . H 6 HOH A 53 553 28 HOH HOH . H 6 HOH A 54 554 45 HOH HOH . H 6 HOH A 55 555 47 HOH HOH . H 6 HOH A 56 556 56 HOH HOH . H 6 HOH A 57 557 42 HOH HOH . H 6 HOH A 58 558 88 HOH HOH . H 6 HOH A 59 559 15 HOH HOH . H 6 HOH A 60 560 70 HOH HOH . H 6 HOH A 61 561 30 HOH HOH . H 6 HOH A 62 562 75 HOH HOH . H 6 HOH A 63 563 32 HOH HOH . H 6 HOH A 64 564 65 HOH HOH . H 6 HOH A 65 565 55 HOH HOH . H 6 HOH A 66 566 60 HOH HOH . H 6 HOH A 67 567 90 HOH HOH . H 6 HOH A 68 568 92 HOH HOH . H 6 HOH A 69 569 98 HOH HOH . H 6 HOH A 70 570 29 HOH HOH . H 6 HOH A 71 571 31 HOH HOH . H 6 HOH A 72 572 59 HOH HOH . H 6 HOH A 73 573 27 HOH HOH . H 6 HOH A 74 574 86 HOH HOH . H 6 HOH A 75 575 63 HOH HOH . H 6 HOH A 76 576 68 HOH HOH . H 6 HOH A 77 577 100 HOH HOH . H 6 HOH A 78 578 10 HOH HOH . H 6 HOH A 79 579 16 HOH HOH . H 6 HOH A 80 580 91 HOH HOH . H 6 HOH A 81 581 97 HOH HOH . H 6 HOH A 82 582 11 HOH HOH . H 6 HOH A 83 583 80 HOH HOH . H 6 HOH A 84 584 103 HOH HOH . H 6 HOH A 85 585 81 HOH HOH . H 6 HOH A 86 586 1 HOH HOH . H 6 HOH A 87 587 102 HOH HOH . H 6 HOH A 88 588 5 HOH HOH . H 6 HOH A 89 589 104 HOH HOH . H 6 HOH A 90 590 73 HOH HOH . H 6 HOH A 91 591 17 HOH HOH . H 6 HOH A 92 592 85 HOH HOH . H 6 HOH A 93 593 101 HOH HOH . H 6 HOH A 94 594 49 HOH HOH . H 6 HOH A 95 595 94 HOH HOH . H 6 HOH A 96 596 106 HOH HOH . H 6 HOH A 97 597 36 HOH HOH . H 6 HOH A 98 598 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . G 5 29.17 -29.723 -28.056 1 26.37 ? OH2 1PE 405 A 1 HETATM 2 C C12 1PE . . . G 5 28.431 -28.763 -27.305 1 28.56 ? C12 1PE 405 A 1 HETATM 3 C C22 1PE . . . G 5 29.255 -27.546 -26.993 1 31.72 ? C22 1PE 405 A 1 HETATM 4 O OH3 1PE . . . G 5 29.856 -27.02 -28.178 1 32.12 ? OH3 1PE 405 A 1 HETATM 5 C C13 1PE . . . G 5 30.029 -24.964 -29.426 1 40.45 ? C13 1PE 405 A 1 HETATM 6 C C23 1PE . . . G 5 30.282 -25.662 -28.094 1 35.36 ? C23 1PE 405 A 1 HETATM 7 O OH4 1PE . . . G 5 29.222 -23.8 -29.244 1 49.21 ? OH4 1PE 405 A 1 HETATM 8 C C14 1PE . . . G 5 27.022 -24.37 -29.71 1 50.37 ? C14 1PE 405 A 1 HETATM 9 C C24 1PE . . . G 5 28.202 -23.651 -30.223 1 48.31 ? C24 1PE 405 A 1 HETATM 10 O OH5 1PE . . . G 5 25.903 -24.223 -30.572 1 49.27 ? OH5 1PE 405 A 1 HETATM 11 C C15 1PE . . . G 5 25.36 -26.497 -30.657 1 43.07 ? C15 1PE 405 A 1 HETATM 12 C C25 1PE . . . G 5 24.866 -25.152 -30.276 1 44.28 ? C25 1PE 405 A 1 HETATM 13 O OH6 1PE . . . G 5 24.281 -27.415 -30.763 1 43.39 ? OH6 1PE 405 A 1 HETATM 14 C C16 1PE . . . G 5 24.644 -28.35 -28.594 1 35.33 ? C16 1PE 405 A 1 HETATM 15 C C26 1PE . . . G 5 23.669 -27.712 -29.512 1 39.96 ? C26 1PE 405 A 1 HETATM 16 O OH7 1PE . . . G 5 25.809 -28.748 -29.259 1 32.84 ? OH7 1PE 405 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #