data_8OL9 # _model_server_result.job_id N9swU4k9GpMhgnxdIPbr6w _model_server_result.datetime_utc '2024-11-29 16:40:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ol9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":303}' # _entry.id 8OL9 # _exptl.entry_id 8OL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 395.862 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OL9 _cell.length_a 61.44 _cell.length_b 97.27 _cell.length_c 366.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 214 A CYS 214 1_555 B SG CYS 225 B CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 149 B CYS 149 1_555 B SG CYS 205 B CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 C SG CYS 26 H CYS 80 1_555 C SG CYS 42 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 C SG CYS 109 H CYS 163 1_555 D SG CYS 49 L CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 C SG CYS 156 H CYS 210 1_555 C SG CYS 170 H CYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 C SG CYS 181 H CYS 235 1_555 C SG CYS 209 H CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 D SG CYS 5 L CYS 5 1_555 D SG CYS 16 L CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 D SG CYS 12 L CYS 12 1_555 D SG CYS 26 L CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 D SG CYS 28 L CYS 28 1_555 D SG CYS 41 L CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 C OE2 GLU 55 H GLU 109 1_555 H CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc2 C O ASN 57 H ASN 111 1_555 H CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc3 C O GLU 60 H GLU 114 1_555 H CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc4 C OE1 GLU 62 H GLU 116 1_555 H CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc5 C OE2 GLU 62 H GLU 116 1_555 H CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc6 C OE2 GLU 65 H GLU 119 1_555 H CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? # _chem_comp.formula 'C14 H28 Cl N6 O5 1' _chem_comp.formula_weight 395.862 _chem_comp.id 0GJ _chem_comp.mon_nstd_flag . _chem_comp.name L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 0GJ sing 1 n n N H 0GJ sing 2 n n N H2 0GJ sing 3 n n CA C 0GJ sing 4 n n CA CB 0GJ sing 5 n n CA HA 0GJ sing 6 n n C O 0GJ doub 7 n n C N1 0GJ sing 8 n n CB CG 0GJ sing 9 n n CB HB2 0GJ sing 10 n n CB HB3 0GJ sing 11 n n CG CD 0GJ sing 12 n n CG HG2 0GJ sing 13 n n CG HG3 0GJ sing 14 n n CD OE1 0GJ doub 15 n n CD OE2 0GJ sing 16 n n OE2 HE2 0GJ sing 17 n n N1 CA1 0GJ sing 18 n n N1 H1 0GJ sing 19 n n CA1 C1 0GJ sing 20 n n CA1 HA2 0GJ sing 21 n n CA1 HA3 0GJ sing 22 n n C1 O1 0GJ doub 23 n n C1 N2 0GJ sing 24 n n N2 CA2 0GJ sing 25 n n N2 H3 0GJ sing 26 n n CA2 C2 0GJ sing 27 n n CA2 CB1 0GJ sing 28 n n CA2 HA1 0GJ sing 29 n n C2 O2 0GJ sing 30 n n C2 C3 0GJ sing 31 n n CB1 CG1 0GJ sing 32 n n CB1 HB21 0GJ sing 33 n n CB1 HB31 0GJ sing 34 n n CG1 CD1 0GJ sing 35 n n CG1 HG21 0GJ sing 36 n n CG1 HG31 0GJ sing 37 n n CD1 NE 0GJ sing 38 n n CD1 HD2 0GJ sing 39 n n CD1 HD3 0GJ sing 40 n n NE CZ 0GJ sing 41 n n NE HE 0GJ sing 42 n n CZ NH1 0GJ sing 43 n n CZ NH2 0GJ doub 44 n n NH1 HH11 0GJ sing 45 n n NH1 HH12 0GJ sing 46 n n NH2 HH21 0GJ sing 47 n n NH2 HH22 0GJ sing 48 n n C3 H11 0GJ sing 49 n n C3 H21 0GJ sing 50 n n CL C3 0GJ sing 51 n n C2 H27 0GJ sing 52 n n O2 H28 0GJ sing 53 n n # _atom_sites.entry_id 8OL9 _atom_sites.fract_transf_matrix[1][1] 0.016276 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SO4 A 1 301 302 SO4 SO4 . F 6 TRS A 1 302 303 TRS TRS . G 5 SO4 B 1 301 301 SO4 SO4 . H 7 CA H 1 302 302 CA CA . I 8 0GJ H 1 303 501 0GJ 0GJ . J 9 HOH A 1 401 16 HOH HOH . J 9 HOH A 2 402 11 HOH HOH . J 9 HOH A 3 403 49 HOH HOH . J 9 HOH A 4 404 21 HOH HOH . J 9 HOH A 5 405 12 HOH HOH . J 9 HOH A 6 406 25 HOH HOH . J 9 HOH A 7 407 8 HOH HOH . J 9 HOH A 8 408 5 HOH HOH . J 9 HOH A 9 409 32 HOH HOH . J 9 HOH A 10 410 14 HOH HOH . J 9 HOH A 11 411 27 HOH HOH . K 9 HOH B 1 401 33 HOH HOH . K 9 HOH B 2 402 6 HOH HOH . K 9 HOH B 3 403 23 HOH HOH . K 9 HOH B 4 404 26 HOH HOH . K 9 HOH B 5 405 10 HOH HOH . K 9 HOH B 6 406 38 HOH HOH . K 9 HOH B 7 407 9 HOH HOH . K 9 HOH B 8 408 15 HOH HOH . K 9 HOH B 9 409 18 HOH HOH . K 9 HOH B 10 410 3 HOH HOH . K 9 HOH B 11 411 66 HOH HOH . K 9 HOH B 12 412 41 HOH HOH . K 9 HOH B 13 413 7 HOH HOH . K 9 HOH B 14 414 24 HOH HOH . K 9 HOH B 15 415 36 HOH HOH . K 9 HOH B 16 416 19 HOH HOH . K 9 HOH B 17 417 17 HOH HOH . K 9 HOH B 18 418 39 HOH HOH . K 9 HOH B 19 419 67 HOH HOH . K 9 HOH B 20 420 54 HOH HOH . K 9 HOH B 21 421 51 HOH HOH . L 9 HOH H 1 401 55 HOH HOH . L 9 HOH H 2 402 68 HOH HOH . L 9 HOH H 3 403 48 HOH HOH . L 9 HOH H 4 404 64 HOH HOH . M 9 HOH L 1 101 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 0GJ . . . I 8 -18.524 -33.084 -34.734 1 82.57 ? N 0GJ 303 H 1 HETATM 2 C CA 0GJ . . . I 8 -18.039 -34.411 -34.231 1 94.87 ? CA 0GJ 303 H 1 HETATM 3 C C 0GJ . . . I 8 -18.693 -34.7 -32.867 1 94.96 ? C 0GJ 303 H 1 HETATM 4 O O 0GJ . . . I 8 -19.849 -34.327 -32.671 1 88.56 ? O 0GJ 303 H 1 HETATM 5 C CB 0GJ . . . I 8 -16.507 -34.431 -34.109 1 94.04 ? CB 0GJ 303 H 1 HETATM 6 C CG 0GJ . . . I 8 -15.879 -33.181 -33.497 1 97.82 ? CG 0GJ 303 H 1 HETATM 7 C CD 0GJ . . . I 8 -14.914 -33.491 -32.347 1 101.66 ? CD 0GJ 303 H 1 HETATM 8 O OE1 0GJ . . . I 8 -14.367 -34.625 -32.291 1 96.75 ? OE1 0GJ 303 H 1 HETATM 9 O OE2 0GJ . . . I 8 -14.706 -32.592 -31.493 1 101.08 -1 OE2 0GJ 303 H 1 HETATM 10 N N1 0GJ . . . I 8 -17.995 -35.367 -31.945 1 97.88 ? N1 0GJ 303 H 1 HETATM 11 C CA1 0GJ . . . I 8 -18.587 -35.666 -30.651 1 94.37 ? CA1 0GJ 303 H 1 HETATM 12 C C1 0GJ . . . I 8 -18.794 -34.348 -29.931 1 98.11 ? C1 0GJ 303 H 1 HETATM 13 O O1 0GJ . . . I 8 -17.959 -33.465 -30.081 1 100.71 ? O1 0GJ 303 H 1 HETATM 14 N N2 0GJ . . . I 8 -19.877 -34.208 -29.17 1 97.03 ? N2 0GJ 303 H 1 HETATM 15 C CA2 0GJ . . . I 8 -20.131 -32.953 -28.454 1 86.64 ? CA2 0GJ 303 H 1 HETATM 16 C C2 0GJ . . . I 8 -21.235 -33.224 -27.45 1 80.22 ? C2 0GJ 303 H 1 HETATM 17 O O2 0GJ . . . I 8 -20.318 -33.295 -26.341 1 84.99 ? O2 0GJ 303 H 1 HETATM 18 C CB1 0GJ . . . I 8 -20.546 -31.842 -29.449 1 81.07 ? CB1 0GJ 303 H 1 HETATM 19 C CG1 0GJ . . . I 8 -19.561 -30.692 -29.582 1 80.44 ? CG1 0GJ 303 H 1 HETATM 20 C CD1 0GJ . . . I 8 -20.237 -29.452 -30.094 1 74.7 ? CD1 0GJ 303 H 1 HETATM 21 N NE 0GJ . . . I 8 -19.4 -28.659 -30.998 1 73.28 ? NE 0GJ 303 H 1 HETATM 22 C CZ 0GJ . . . I 8 -19.704 -27.412 -31.363 1 72.46 ? CZ 0GJ 303 H 1 HETATM 23 N NH1 0GJ . . . I 8 -18.911 -26.728 -32.185 1 66.16 ? NH1 0GJ 303 H 1 HETATM 24 N NH2 0GJ . . . I 8 -20.802 -26.839 -30.906 1 74.95 ? NH2 0GJ 303 H 1 HETATM 25 C C3 0GJ . . . I 8 -21.94 -34.535 -27.893 1 78.76 ? C3 0GJ 303 H 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #