data_8OLD # _model_server_result.job_id OHCFrh6oSyS2YslZ1hXsxw _model_server_result.datetime_utc '2024-11-05 23:31:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8old # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":306}' # _entry.id 8OLD # _exptl.entry_id 8OLD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 73.94 _cell.angle_beta 89.56 _cell.angle_gamma 89.75 _cell.entry_id 8OLD _cell.length_a 42.033 _cell.length_b 57.843 _cell.length_c 61.622 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OLD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,L 1 1 B,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 44 B ASN 30 1_555 H NA NA . B NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc2 A O TYR 45 B TYR 31 1_555 H NA NA . B NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc3 H NA NA . B NA 306 1_555 L O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc4 H NA NA . B NA 306 1_555 L O HOH . B HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc5 H NA NA . B NA 306 1_555 L O HOH . B HOH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc6 H NA NA . B NA 306 1_555 M O HOH . C HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8OLD _atom_sites.fract_transf_matrix[1][1] 0.023791 _atom_sites.fract_transf_matrix[1][2] -0.000104 _atom_sites.fract_transf_matrix[1][3] -0.00016 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017288 _atom_sites.fract_transf_matrix[2][3] -0.004977 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CAC B 1 301 3 CAC CAC . D 3 CL B 1 302 2 CL CL . E 4 MPD B 1 303 1 MPD MPD . F 4 MPD B 1 304 2 MPD MPD . G 4 MPD B 1 305 3 MPD MPD . H 5 NA B 1 306 1 NA NA . I 2 CAC C 1 301 1 CAC CAC . J 2 CAC C 1 302 2 CAC CAC . K 3 CL C 1 303 1 CL CL . L 6 HOH B 1 401 184 HOH HOH . L 6 HOH B 2 402 191 HOH HOH . L 6 HOH B 3 403 91 HOH HOH . L 6 HOH B 4 404 22 HOH HOH . L 6 HOH B 5 405 115 HOH HOH . L 6 HOH B 6 406 255 HOH HOH . L 6 HOH B 7 407 109 HOH HOH . L 6 HOH B 8 408 137 HOH HOH . L 6 HOH B 9 409 86 HOH HOH . L 6 HOH B 10 410 83 HOH HOH . L 6 HOH B 11 411 58 HOH HOH . L 6 HOH B 12 412 26 HOH HOH . L 6 HOH B 13 413 105 HOH HOH . L 6 HOH B 14 414 92 HOH HOH . L 6 HOH B 15 415 151 HOH HOH . L 6 HOH B 16 416 4 HOH HOH . L 6 HOH B 17 417 232 HOH HOH . L 6 HOH B 18 418 139 HOH HOH . L 6 HOH B 19 419 104 HOH HOH . L 6 HOH B 20 420 46 HOH HOH . L 6 HOH B 21 421 128 HOH HOH . L 6 HOH B 22 422 23 HOH HOH . L 6 HOH B 23 423 134 HOH HOH . L 6 HOH B 24 424 223 HOH HOH . L 6 HOH B 25 425 108 HOH HOH . L 6 HOH B 26 426 183 HOH HOH . L 6 HOH B 27 427 51 HOH HOH . L 6 HOH B 28 428 171 HOH HOH . L 6 HOH B 29 429 143 HOH HOH . L 6 HOH B 30 430 45 HOH HOH . L 6 HOH B 31 431 56 HOH HOH . L 6 HOH B 32 432 73 HOH HOH . L 6 HOH B 33 433 38 HOH HOH . L 6 HOH B 34 434 102 HOH HOH . L 6 HOH B 35 435 179 HOH HOH . L 6 HOH B 36 436 110 HOH HOH . L 6 HOH B 37 437 20 HOH HOH . L 6 HOH B 38 438 100 HOH HOH . L 6 HOH B 39 439 17 HOH HOH . L 6 HOH B 40 440 75 HOH HOH . L 6 HOH B 41 441 251 HOH HOH . L 6 HOH B 42 442 1 HOH HOH . L 6 HOH B 43 443 67 HOH HOH . L 6 HOH B 44 444 89 HOH HOH . L 6 HOH B 45 445 5 HOH HOH . L 6 HOH B 46 446 19 HOH HOH . L 6 HOH B 47 447 226 HOH HOH . L 6 HOH B 48 448 107 HOH HOH . L 6 HOH B 49 449 141 HOH HOH . L 6 HOH B 50 450 25 HOH HOH . L 6 HOH B 51 451 118 HOH HOH . L 6 HOH B 52 452 132 HOH HOH . L 6 HOH B 53 453 36 HOH HOH . L 6 HOH B 54 454 32 HOH HOH . L 6 HOH B 55 455 37 HOH HOH . L 6 HOH B 56 456 152 HOH HOH . L 6 HOH B 57 457 120 HOH HOH . L 6 HOH B 58 458 57 HOH HOH . L 6 HOH B 59 459 65 HOH HOH . L 6 HOH B 60 460 52 HOH HOH . L 6 HOH B 61 461 84 HOH HOH . L 6 HOH B 62 462 106 HOH HOH . L 6 HOH B 63 463 72 HOH HOH . L 6 HOH B 64 464 176 HOH HOH . L 6 HOH B 65 465 97 HOH HOH . L 6 HOH B 66 466 253 HOH HOH . L 6 HOH B 67 467 41 HOH HOH . L 6 HOH B 68 468 48 HOH HOH . L 6 HOH B 69 469 181 HOH HOH . L 6 HOH B 70 470 99 HOH HOH . L 6 HOH B 71 471 229 HOH HOH . L 6 HOH B 72 472 190 HOH HOH . L 6 HOH B 73 473 117 HOH HOH . L 6 HOH B 74 474 60 HOH HOH . L 6 HOH B 75 475 131 HOH HOH . L 6 HOH B 76 476 237 HOH HOH . L 6 HOH B 77 477 59 HOH HOH . L 6 HOH B 78 478 149 HOH HOH . L 6 HOH B 79 479 265 HOH HOH . L 6 HOH B 80 480 244 HOH HOH . L 6 HOH B 81 481 225 HOH HOH . L 6 HOH B 82 482 233 HOH HOH . L 6 HOH B 83 483 174 HOH HOH . L 6 HOH B 84 484 180 HOH HOH . L 6 HOH B 85 485 10 HOH HOH . L 6 HOH B 86 486 98 HOH HOH . L 6 HOH B 87 487 147 HOH HOH . L 6 HOH B 88 488 71 HOH HOH . L 6 HOH B 89 489 68 HOH HOH . L 6 HOH B 90 490 63 HOH HOH . L 6 HOH B 91 491 144 HOH HOH . L 6 HOH B 92 492 252 HOH HOH . L 6 HOH B 93 493 122 HOH HOH . L 6 HOH B 94 494 258 HOH HOH . L 6 HOH B 95 495 136 HOH HOH . L 6 HOH B 96 496 96 HOH HOH . L 6 HOH B 97 497 85 HOH HOH . L 6 HOH B 98 498 95 HOH HOH . L 6 HOH B 99 499 103 HOH HOH . L 6 HOH B 100 500 257 HOH HOH . L 6 HOH B 101 501 235 HOH HOH . L 6 HOH B 102 502 66 HOH HOH . L 6 HOH B 103 503 230 HOH HOH . L 6 HOH B 104 504 94 HOH HOH . L 6 HOH B 105 505 148 HOH HOH . L 6 HOH B 106 506 172 HOH HOH . L 6 HOH B 107 507 12 HOH HOH . L 6 HOH B 108 508 142 HOH HOH . L 6 HOH B 109 509 64 HOH HOH . L 6 HOH B 110 510 53 HOH HOH . L 6 HOH B 111 511 175 HOH HOH . L 6 HOH B 112 512 150 HOH HOH . L 6 HOH B 113 513 93 HOH HOH . L 6 HOH B 114 514 116 HOH HOH . L 6 HOH B 115 515 49 HOH HOH . L 6 HOH B 116 516 111 HOH HOH . L 6 HOH B 117 517 62 HOH HOH . L 6 HOH B 118 518 260 HOH HOH . L 6 HOH B 119 519 140 HOH HOH . L 6 HOH B 120 520 254 HOH HOH . L 6 HOH B 121 521 133 HOH HOH . L 6 HOH B 122 522 145 HOH HOH . L 6 HOH B 123 523 114 HOH HOH . L 6 HOH B 124 524 261 HOH HOH . L 6 HOH B 125 525 236 HOH HOH . L 6 HOH B 126 526 113 HOH HOH . L 6 HOH B 127 527 173 HOH HOH . L 6 HOH B 128 528 247 HOH HOH . L 6 HOH B 129 529 234 HOH HOH . L 6 HOH B 130 530 256 HOH HOH . L 6 HOH B 131 531 146 HOH HOH . L 6 HOH B 132 532 231 HOH HOH . L 6 HOH B 133 533 266 HOH HOH . L 6 HOH B 134 534 249 HOH HOH . L 6 HOH B 135 535 185 HOH HOH . L 6 HOH B 136 536 101 HOH HOH . L 6 HOH B 137 537 269 HOH HOH . L 6 HOH B 138 538 268 HOH HOH . L 6 HOH B 139 539 112 HOH HOH . L 6 HOH B 140 540 70 HOH HOH . L 6 HOH B 141 541 262 HOH HOH . M 6 HOH C 1 401 217 HOH HOH . M 6 HOH C 2 402 80 HOH HOH . M 6 HOH C 3 403 203 HOH HOH . M 6 HOH C 4 404 27 HOH HOH . M 6 HOH C 5 405 259 HOH HOH . M 6 HOH C 6 406 240 HOH HOH . M 6 HOH C 7 407 21 HOH HOH . M 6 HOH C 8 408 135 HOH HOH . M 6 HOH C 9 409 192 HOH HOH . M 6 HOH C 10 410 39 HOH HOH . M 6 HOH C 11 411 220 HOH HOH . M 6 HOH C 12 412 177 HOH HOH . M 6 HOH C 13 413 201 HOH HOH . M 6 HOH C 14 414 2 HOH HOH . M 6 HOH C 15 415 126 HOH HOH . M 6 HOH C 16 416 205 HOH HOH . M 6 HOH C 17 417 163 HOH HOH . M 6 HOH C 18 418 35 HOH HOH . M 6 HOH C 19 419 15 HOH HOH . M 6 HOH C 20 420 18 HOH HOH . M 6 HOH C 21 421 82 HOH HOH . M 6 HOH C 22 422 16 HOH HOH . M 6 HOH C 23 423 155 HOH HOH . M 6 HOH C 24 424 270 HOH HOH . M 6 HOH C 25 425 29 HOH HOH . M 6 HOH C 26 426 208 HOH HOH . M 6 HOH C 27 427 222 HOH HOH . M 6 HOH C 28 428 199 HOH HOH . M 6 HOH C 29 429 202 HOH HOH . M 6 HOH C 30 430 42 HOH HOH . M 6 HOH C 31 431 160 HOH HOH . M 6 HOH C 32 432 166 HOH HOH . M 6 HOH C 33 433 267 HOH HOH . M 6 HOH C 34 434 215 HOH HOH . M 6 HOH C 35 435 211 HOH HOH . M 6 HOH C 36 436 40 HOH HOH . M 6 HOH C 37 437 189 HOH HOH . M 6 HOH C 38 438 263 HOH HOH . M 6 HOH C 39 439 33 HOH HOH . M 6 HOH C 40 440 7 HOH HOH . M 6 HOH C 41 441 79 HOH HOH . M 6 HOH C 42 442 157 HOH HOH . M 6 HOH C 43 443 206 HOH HOH . M 6 HOH C 44 444 186 HOH HOH . M 6 HOH C 45 445 207 HOH HOH . M 6 HOH C 46 446 197 HOH HOH . M 6 HOH C 47 447 3 HOH HOH . M 6 HOH C 48 448 43 HOH HOH . M 6 HOH C 49 449 218 HOH HOH . M 6 HOH C 50 450 54 HOH HOH . M 6 HOH C 51 451 204 HOH HOH . M 6 HOH C 52 452 78 HOH HOH . M 6 HOH C 53 453 264 HOH HOH . M 6 HOH C 54 454 159 HOH HOH . M 6 HOH C 55 455 200 HOH HOH . M 6 HOH C 56 456 13 HOH HOH . M 6 HOH C 57 457 210 HOH HOH . M 6 HOH C 58 458 227 HOH HOH . M 6 HOH C 59 459 164 HOH HOH . M 6 HOH C 60 460 125 HOH HOH . M 6 HOH C 61 461 271 HOH HOH . M 6 HOH C 62 462 9 HOH HOH . M 6 HOH C 63 463 212 HOH HOH . M 6 HOH C 64 464 88 HOH HOH . M 6 HOH C 65 465 14 HOH HOH . M 6 HOH C 66 466 47 HOH HOH . M 6 HOH C 67 467 31 HOH HOH . M 6 HOH C 68 468 81 HOH HOH . M 6 HOH C 69 469 162 HOH HOH . M 6 HOH C 70 470 76 HOH HOH . M 6 HOH C 71 471 195 HOH HOH . M 6 HOH C 72 472 28 HOH HOH . M 6 HOH C 73 473 158 HOH HOH . M 6 HOH C 74 474 55 HOH HOH . M 6 HOH C 75 475 196 HOH HOH . M 6 HOH C 76 476 182 HOH HOH . M 6 HOH C 77 477 44 HOH HOH . M 6 HOH C 78 478 121 HOH HOH . M 6 HOH C 79 479 138 HOH HOH . M 6 HOH C 80 480 129 HOH HOH . M 6 HOH C 81 481 34 HOH HOH . M 6 HOH C 82 482 169 HOH HOH . M 6 HOH C 83 483 178 HOH HOH . M 6 HOH C 84 484 11 HOH HOH . M 6 HOH C 85 485 74 HOH HOH . M 6 HOH C 86 486 161 HOH HOH . M 6 HOH C 87 487 238 HOH HOH . M 6 HOH C 88 488 241 HOH HOH . M 6 HOH C 89 489 194 HOH HOH . M 6 HOH C 90 490 272 HOH HOH . M 6 HOH C 91 491 198 HOH HOH . M 6 HOH C 92 492 8 HOH HOH . M 6 HOH C 93 493 224 HOH HOH . M 6 HOH C 94 494 216 HOH HOH . M 6 HOH C 95 495 6 HOH HOH . M 6 HOH C 96 496 153 HOH HOH . M 6 HOH C 97 497 246 HOH HOH . M 6 HOH C 98 498 123 HOH HOH . M 6 HOH C 99 499 156 HOH HOH . M 6 HOH C 100 500 24 HOH HOH . M 6 HOH C 101 501 239 HOH HOH . M 6 HOH C 102 502 209 HOH HOH . M 6 HOH C 103 503 187 HOH HOH . M 6 HOH C 104 504 61 HOH HOH . M 6 HOH C 105 505 228 HOH HOH . M 6 HOH C 106 506 170 HOH HOH . M 6 HOH C 107 507 127 HOH HOH . M 6 HOH C 108 508 214 HOH HOH . M 6 HOH C 109 509 50 HOH HOH . M 6 HOH C 110 510 213 HOH HOH . M 6 HOH C 111 511 165 HOH HOH . M 6 HOH C 112 512 188 HOH HOH . M 6 HOH C 113 513 124 HOH HOH . M 6 HOH C 114 514 245 HOH HOH . M 6 HOH C 115 515 77 HOH HOH . M 6 HOH C 116 516 193 HOH HOH . M 6 HOH C 117 517 243 HOH HOH . M 6 HOH C 118 518 168 HOH HOH . M 6 HOH C 119 519 69 HOH HOH . M 6 HOH C 120 520 130 HOH HOH . M 6 HOH C 121 521 250 HOH HOH . M 6 HOH C 122 522 154 HOH HOH . M 6 HOH C 123 523 30 HOH HOH . M 6 HOH C 124 524 87 HOH HOH . M 6 HOH C 125 525 242 HOH HOH . M 6 HOH C 126 526 90 HOH HOH . M 6 HOH C 127 527 167 HOH HOH . M 6 HOH C 128 528 248 HOH HOH . M 6 HOH C 129 529 221 HOH HOH . M 6 HOH C 130 530 219 HOH HOH . M 6 HOH C 131 531 119 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x 1.127 _atom_site.Cartn_y -9.193 _atom_site.Cartn_z -20.32 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 306 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #