data_8OM8 # _model_server_result.job_id MDkJ-MihE2GCdii-vGdqEw _model_server_result.datetime_utc '2024-12-27 17:57:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8om8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8OM8 # _exptl.entry_id 8OM8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.11 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)V(IV)O4 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OM8 _cell.length_a 78.06 _cell.length_b 78.06 _cell.length_c 37.01 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OM8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A OD2 ASP 48 AAA ASP 48 1_555 D V VTZ . AAA VTZ 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc2 A O SER 60 AAA SER 60 1_555 I NA NA . AAA NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc3 A O CYS 64 AAA CYS 64 1_555 I NA NA . AAA NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc4 A OG SER 72 AAA SER 72 1_555 I NA NA . AAA NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc5 A O ARG 73 AAA ARG 73 1_555 I NA NA . AAA NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc6 I NA NA . AAA NA 208 1_555 J O HOH . AAA HOH 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc7 I NA NA . AAA NA 208 1_555 J O HOH . AAA HOH 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? # _chem_comp.formula 'C8 H10 N O6 V' _chem_comp.formula_weight 267.11 _chem_comp.id VTZ _chem_comp.mon_nstd_flag . _chem_comp.name 1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)V(IV)O4 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 V VTZ sing 462 n n O5 V VTZ doub 463 n n O4 V VTZ sing 464 n n O4 C8 VTZ sing 465 n n V O2 VTZ sing 466 n n V O3 VTZ sing 467 n n C14 C13 VTZ sing 468 n n C13 C11 VTZ sing 469 n n C8 C11 VTZ doub 470 n n C8 C9 VTZ sing 471 n n C11 NA2 VTZ sing 472 n n O3 C9 VTZ doub 473 n n C9 C10 VTZ sing 474 n n NA2 CN2 VTZ sing 475 n n NA2 C12 VTZ sing 476 n n C10 C12 VTZ doub 477 n n C10 H1 VTZ sing 478 n n C12 H2 VTZ sing 479 n n C13 H3 VTZ sing 480 n n C13 H4 VTZ sing 481 n n C14 H5 VTZ sing 482 n n C14 H6 VTZ sing 483 n n C14 H7 VTZ sing 484 n n CN2 H11 VTZ sing 485 n n CN2 H12 VTZ sing 486 n n CN2 H13 VTZ sing 487 n n V O1 VTZ sing 488 n n # _atom_sites.entry_id 8OM8 _atom_sites.fract_transf_matrix[1][1] 0.012811 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012811 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT AAA 1 201 1 ACT ACT . C 3 VSU AAA 1 202 1 VSU ERQ . D 4 VTZ AAA 1 203 2 VTZ MR7 . E 5 CL AAA 1 204 1 CL CL . F 5 CL AAA 1 205 2 CL CL . G 5 CL AAA 1 206 3 CL CL . H 5 CL AAA 1 207 4 CL CL . I 6 NA AAA 1 208 5 NA NA . J 7 HOH AAA 1 301 52 HOH HOH . J 7 HOH AAA 2 302 66 HOH HOH . J 7 HOH AAA 3 303 69 HOH HOH . J 7 HOH AAA 4 304 77 HOH HOH . J 7 HOH AAA 5 305 92 HOH HOH . J 7 HOH AAA 6 306 71 HOH HOH . J 7 HOH AAA 7 307 131 HOH HOH . J 7 HOH AAA 8 308 114 HOH HOH . J 7 HOH AAA 9 309 59 HOH HOH . J 7 HOH AAA 10 310 186 HOH HOH . J 7 HOH AAA 11 311 111 HOH HOH . J 7 HOH AAA 12 312 43 HOH HOH . J 7 HOH AAA 13 313 83 HOH HOH . J 7 HOH AAA 14 314 65 HOH HOH . J 7 HOH AAA 15 315 129 HOH HOH . J 7 HOH AAA 16 316 31 HOH HOH . J 7 HOH AAA 17 317 5 HOH HOH . J 7 HOH AAA 18 318 125 HOH HOH . J 7 HOH AAA 19 319 118 HOH HOH . J 7 HOH AAA 20 320 8 HOH HOH . J 7 HOH AAA 21 321 121 HOH HOH . J 7 HOH AAA 22 322 116 HOH HOH . J 7 HOH AAA 23 323 86 HOH HOH . J 7 HOH AAA 24 324 21 HOH HOH . J 7 HOH AAA 25 325 44 HOH HOH . J 7 HOH AAA 26 326 108 HOH HOH . J 7 HOH AAA 27 327 82 HOH HOH . J 7 HOH AAA 28 328 74 HOH HOH . J 7 HOH AAA 29 329 39 HOH HOH . J 7 HOH AAA 30 330 45 HOH HOH . J 7 HOH AAA 31 331 88 HOH HOH . J 7 HOH AAA 32 332 179 HOH HOH . J 7 HOH AAA 33 333 46 HOH HOH . J 7 HOH AAA 34 334 178 HOH HOH . J 7 HOH AAA 35 335 17 HOH HOH . J 7 HOH AAA 36 336 76 HOH HOH . J 7 HOH AAA 37 337 32 HOH HOH . J 7 HOH AAA 38 338 29 HOH HOH . J 7 HOH AAA 39 339 14 HOH HOH . J 7 HOH AAA 40 340 33 HOH HOH . J 7 HOH AAA 41 341 28 HOH HOH . J 7 HOH AAA 42 342 67 HOH HOH . J 7 HOH AAA 43 343 56 HOH HOH . J 7 HOH AAA 44 344 146 HOH HOH . J 7 HOH AAA 45 345 181 HOH HOH . J 7 HOH AAA 46 346 103 HOH HOH . J 7 HOH AAA 47 347 109 HOH HOH . J 7 HOH AAA 48 348 38 HOH HOH . J 7 HOH AAA 49 349 6 HOH HOH . J 7 HOH AAA 50 350 7 HOH HOH . J 7 HOH AAA 51 351 155 HOH HOH . J 7 HOH AAA 52 352 79 HOH HOH . J 7 HOH AAA 53 353 94 HOH HOH . J 7 HOH AAA 54 354 51 HOH HOH . J 7 HOH AAA 55 355 112 HOH HOH . J 7 HOH AAA 56 356 37 HOH HOH . J 7 HOH AAA 57 357 13 HOH HOH . J 7 HOH AAA 58 358 124 HOH HOH . J 7 HOH AAA 59 359 58 HOH HOH . J 7 HOH AAA 60 360 122 HOH HOH . J 7 HOH AAA 61 361 22 HOH HOH . J 7 HOH AAA 62 362 101 HOH HOH . J 7 HOH AAA 63 363 134 HOH HOH . J 7 HOH AAA 64 364 35 HOH HOH . J 7 HOH AAA 65 365 55 HOH HOH . J 7 HOH AAA 66 366 36 HOH HOH . J 7 HOH AAA 67 367 27 HOH HOH . J 7 HOH AAA 68 368 115 HOH HOH . J 7 HOH AAA 69 369 81 HOH HOH . J 7 HOH AAA 70 370 40 HOH HOH . J 7 HOH AAA 71 371 41 HOH HOH . J 7 HOH AAA 72 372 12 HOH HOH . J 7 HOH AAA 73 373 75 HOH HOH . J 7 HOH AAA 74 374 104 HOH HOH . J 7 HOH AAA 75 375 138 HOH HOH . J 7 HOH AAA 76 376 11 HOH HOH . J 7 HOH AAA 77 377 24 HOH HOH . J 7 HOH AAA 78 378 26 HOH HOH . J 7 HOH AAA 79 379 185 HOH HOH . J 7 HOH AAA 80 380 68 HOH HOH . J 7 HOH AAA 81 381 80 HOH HOH . J 7 HOH AAA 82 382 9 HOH HOH . J 7 HOH AAA 83 383 107 HOH HOH . J 7 HOH AAA 84 384 53 HOH HOH . J 7 HOH AAA 85 385 64 HOH HOH . J 7 HOH AAA 86 386 19 HOH HOH . J 7 HOH AAA 87 387 120 HOH HOH . J 7 HOH AAA 88 388 60 HOH HOH . J 7 HOH AAA 89 389 167 HOH HOH . J 7 HOH AAA 90 390 54 HOH HOH . J 7 HOH AAA 91 391 70 HOH HOH . J 7 HOH AAA 92 392 171 HOH HOH . J 7 HOH AAA 93 393 47 HOH HOH . J 7 HOH AAA 94 394 188 HOH HOH . J 7 HOH AAA 95 395 34 HOH HOH . J 7 HOH AAA 96 396 10 HOH HOH . J 7 HOH AAA 97 397 16 HOH HOH . J 7 HOH AAA 98 398 149 HOH HOH . J 7 HOH AAA 99 399 57 HOH HOH . J 7 HOH AAA 100 400 62 HOH HOH . J 7 HOH AAA 101 401 180 HOH HOH . J 7 HOH AAA 102 402 176 HOH HOH . J 7 HOH AAA 103 403 102 HOH HOH . J 7 HOH AAA 104 404 25 HOH HOH . J 7 HOH AAA 105 405 105 HOH HOH . J 7 HOH AAA 106 406 117 HOH HOH . J 7 HOH AAA 107 407 144 HOH HOH . J 7 HOH AAA 108 408 141 HOH HOH . J 7 HOH AAA 109 409 73 HOH HOH . J 7 HOH AAA 110 410 165 HOH HOH . J 7 HOH AAA 111 411 23 HOH HOH . J 7 HOH AAA 112 412 42 HOH HOH . J 7 HOH AAA 113 413 30 HOH HOH . J 7 HOH AAA 114 414 175 HOH HOH . J 7 HOH AAA 115 415 150 HOH HOH . J 7 HOH AAA 116 416 160 HOH HOH . J 7 HOH AAA 117 417 173 HOH HOH . J 7 HOH AAA 118 418 142 HOH HOH . J 7 HOH AAA 119 419 152 HOH HOH . J 7 HOH AAA 120 420 87 HOH HOH . J 7 HOH AAA 121 421 182 HOH HOH . J 7 HOH AAA 122 422 84 HOH HOH . J 7 HOH AAA 123 423 164 HOH HOH . J 7 HOH AAA 124 424 91 HOH HOH . J 7 HOH AAA 125 425 126 HOH HOH . J 7 HOH AAA 126 426 90 HOH HOH . J 7 HOH AAA 127 427 133 HOH HOH . J 7 HOH AAA 128 428 72 HOH HOH . J 7 HOH AAA 129 429 132 HOH HOH . J 7 HOH AAA 130 430 159 HOH HOH . J 7 HOH AAA 131 431 89 HOH HOH . J 7 HOH AAA 132 432 174 HOH HOH . J 7 HOH AAA 133 433 183 HOH HOH . J 7 HOH AAA 134 434 135 HOH HOH . J 7 HOH AAA 135 435 184 HOH HOH . J 7 HOH AAA 136 436 106 HOH HOH . J 7 HOH AAA 137 437 136 HOH HOH . J 7 HOH AAA 138 438 157 HOH HOH . J 7 HOH AAA 139 439 177 HOH HOH . J 7 HOH AAA 140 440 63 HOH HOH . J 7 HOH AAA 141 441 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 VTZ . . . D 4 -9.012 -24.102 9.21 0.6 32.64 0 C8 VTZ 203 AAA 1 HETATM 2 C C9 VTZ . . . D 4 -10.223 -24.055 8.458 0.6 26.29 0 C9 VTZ 203 AAA 1 HETATM 3 C C10 VTZ . . . D 4 -10.339 -24.168 7.087 0.6 28.57 0 C10 VTZ 203 AAA 1 HETATM 4 C C11 VTZ . . . D 4 -7.874 -24.263 8.479 0.6 36.86 0 C11 VTZ 203 AAA 1 HETATM 5 C C12 VTZ . . . D 4 -9.143 -24.332 6.383 0.6 31.06 0 C12 VTZ 203 AAA 1 HETATM 6 C C13 VTZ . . . D 4 -6.604 -24.342 9.018 0.6 43.47 0 C13 VTZ 203 AAA 1 HETATM 7 C C14 VTZ . . . D 4 -6.146 -23.181 9.576 0.6 45.83 0 C14 VTZ 203 AAA 1 HETATM 8 O O2 VTZ . . . D 4 -10.976 -22.118 10.595 0.6 46.69 0 O2 VTZ 203 AAA 1 HETATM 9 O O3 VTZ . . . D 4 -11.393 -23.93 9.039 0.6 22.3 0 O3 VTZ 203 AAA 1 HETATM 10 V V VTZ . . . D 4 -11.245 -23.686 10.649 0.6 23.24 0 V VTZ 203 AAA 1 HETATM 11 O O4 VTZ . . . D 4 -9.364 -23.978 10.329 0.6 29.52 0 O4 VTZ 203 AAA 1 HETATM 12 O O6 VTZ . . . D 4 -10.992 -23.688 12.318 0.6 32.93 0 O6 VTZ 203 AAA 1 HETATM 13 N NA2 VTZ . . . D 4 -7.913 -24.379 7.088 0.6 33.22 0 NA2 VTZ 203 AAA 1 HETATM 14 C CN2 VTZ . . . D 4 -6.677 -24.543 6.436 0.6 34.41 0 CN2 VTZ 203 AAA 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 14 #