data_8OMA # _model_server_result.job_id pcAviVH20wXMBwVKBGMI4g _model_server_result.datetime_utc '2024-12-26 16:30:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oma # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2000}' # _entry.id 8OMA # _exptl.entry_id 8OMA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OMA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OG SER 903 B SER 903 1_555 G MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc2 F O2G ATP . B ATP 2000 1_555 G MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc3 F O2B ATP . B ATP 2000 1_555 G MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc4 F O3B ATP . B ATP 2000 1_555 G MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 C DC 1 1_555 B N1 DG 17 D DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 C DC 1 1_555 B O6 DG 17 D DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 C DC 1 1_555 B N2 DG 17 D DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DT 2 C DT 2 1_555 B N1 DA 16 D DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 DT 2 C DT 2 1_555 B N6 DA 16 D DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 3 C DG 3 1_555 B N3 DC 15 D DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 3 C DG 3 1_555 B O2 DC 15 D DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 3 C DG 3 1_555 B N4 DC 15 D DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 4 C DA 4 1_555 B N3 DT 14 D DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 4 C DA 4 1_555 B O4 DT 14 D DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DA 5 C DA 5 1_555 B N3 DT 13 D DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 DA 5 C DA 5 1_555 B O4 DT 13 D DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 6 C DG 6 1_555 B N3 DC 12 D DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 6 C DG 6 1_555 B O2 DC 12 D DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 6 C DG 6 1_555 B N4 DC 12 D DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DC 7 C DC 7 1_555 B N1 DG 11 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 DC 7 C DC 7 1_555 B O6 DG 11 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 DC 7 C DC 7 1_555 B N2 DG 11 D DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 8 C DT 8 1_555 B N1 DA 10 D DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 8 C DT 8 1_555 B N6 DA 10 D DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DT 9 C DT 9 1_555 B N1 DA 9 D DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O4 DT 9 C DT 9 1_555 B N6 DA 9 D DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 DA 10 C DA 10 1_555 B N3 DT 8 D DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N6 DA 10 C DA 10 1_555 B O4 DT 8 D DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N1 DG 11 C DG 11 1_555 B N3 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N2 DG 11 C DG 11 1_555 B O2 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O6 DG 11 C DG 11 1_555 B N4 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N3 DC 12 C DC 12 1_555 B N1 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N4 DC 12 C DC 12 1_555 B O6 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O2 DC 12 C DC 12 1_555 B N2 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N3 DT 13 C DT 13 1_555 B N1 DA 5 D DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O4 DT 13 C DT 13 1_555 B N6 DA 5 D DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N3 DT 14 C DT 14 1_555 B N1 DA 4 D DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A O4 DT 14 C DT 14 1_555 B N6 DA 4 D DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N1 DA 15 C DA 15 1_555 B N3 DT 3 D DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N6 DA 15 C DA 15 1_555 B O4 DT 3 D DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N1 DG 16 C DG 16 1_555 B N3 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N2 DG 16 C DG 16 1_555 B O2 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A O6 DG 16 C DG 16 1_555 B N4 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A N1 DG 17 C DG 17 1_555 B N3 DC 1 D DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A N2 DG 17 C DG 17 1_555 B O2 DC 1 D DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A O6 DG 17 C DG 17 1_555 B N4 DC 1 D DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8OMA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ATP A 1 2000 2000 ATP ATP . F 5 ATP B 1 2000 2000 ATP ATP . G 6 MG B 1 2001 2001 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 5 142.18 149.875 174.785 1 135.27 ? PG ATP 2000 B 1 HETATM 2 O O1G ATP . . . F 5 141.967 149.558 176.238 1 149.53 ? O1G ATP 2000 B 1 HETATM 3 O O2G ATP . . . F 5 143.551 150.434 174.505 1 135.99 ? O2G ATP 2000 B 1 HETATM 4 O O3G ATP . . . F 5 141.834 148.704 173.903 1 154.6 ? O3G ATP 2000 B 1 HETATM 5 P PB ATP . . . F 5 141.008 152.594 174.512 1 148.96 ? PB ATP 2000 B 1 HETATM 6 O O1B ATP . . . F 5 140.488 152.927 175.86 1 146.14 ? O1B ATP 2000 B 1 HETATM 7 O O2B ATP . . . F 5 142.272 153.229 174.071 1 159.11 ? O2B ATP 2000 B 1 HETATM 8 O O3B ATP . . . F 5 141.131 151.009 174.355 1 125.57 ? O3B ATP 2000 B 1 HETATM 9 P PA ATP . . . F 5 139.861 153.827 172.088 1 141.21 ? PA ATP 2000 B 1 HETATM 10 O O1A ATP . . . F 5 140.544 153.152 170.943 1 147.04 ? O1A ATP 2000 B 1 HETATM 11 O O2A ATP . . . F 5 140.392 155.184 172.409 1 134.11 ? O2A ATP 2000 B 1 HETATM 12 O O3A ATP . . . F 5 139.888 152.905 173.41 1 142.2 ? O3A ATP 2000 B 1 HETATM 13 O O5' ATP . . . F 5 138.283 153.91 171.811 1 95.33 ? O5' ATP 2000 B 1 HETATM 14 C C5' ATP . . . F 5 137.87 155.173 171.256 1 80.44 ? C5' ATP 2000 B 1 HETATM 15 C C4' ATP . . . F 5 136.538 155.049 170.584 1 89.43 ? C4' ATP 2000 B 1 HETATM 16 O O4' ATP . . . F 5 135.54 155.486 171.537 1 103.24 ? O4' ATP 2000 B 1 HETATM 17 C C3' ATP . . . F 5 136.351 155.94 169.353 1 98.18 ? C3' ATP 2000 B 1 HETATM 18 O O3' ATP . . . F 5 136.601 155.187 168.174 1 119.61 ? O3' ATP 2000 B 1 HETATM 19 C C2' ATP . . . F 5 134.874 156.328 169.46 1 109.35 ? C2' ATP 2000 B 1 HETATM 20 O O2' ATP . . . F 5 134.005 155.33 168.964 1 116.76 ? O2' ATP 2000 B 1 HETATM 21 C C1' ATP . . . F 5 134.737 156.492 170.969 1 105.49 ? C1' ATP 2000 B 1 HETATM 22 N N9 ATP . . . F 5 135.191 157.782 171.473 1 93.67 ? N9 ATP 2000 B 1 HETATM 23 C C8 ATP . . . F 5 136.471 158.199 171.674 1 87.78 ? C8 ATP 2000 B 1 HETATM 24 N N7 ATP . . . F 5 136.556 159.418 172.138 1 77.69 ? N7 ATP 2000 B 1 HETATM 25 C C5 ATP . . . F 5 135.24 159.822 172.233 1 76.77 ? C5 ATP 2000 B 1 HETATM 26 C C6 ATP . . . F 5 134.652 161.02 172.645 1 97.28 ? C6 ATP 2000 B 1 HETATM 27 N N6 ATP . . . F 5 135.36 162.063 173.049 1 105.03 ? N6 ATP 2000 B 1 HETATM 28 N N1 ATP . . . F 5 133.297 161.109 172.604 1 112.69 ? N1 ATP 2000 B 1 HETATM 29 C C2 ATP . . . F 5 132.589 160.049 172.197 1 111.92 ? C2 ATP 2000 B 1 HETATM 30 N N3 ATP . . . F 5 133.04 158.866 171.783 1 107.11 ? N3 ATP 2000 B 1 HETATM 31 C C4 ATP . . . F 5 134.386 158.828 171.82 1 89.28 ? C4 ATP 2000 B 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #