data_8OMF # _model_server_result.job_id kph4bj99GhKTDITapuANRQ _model_server_result.datetime_utc '2024-12-23 11:06:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8omf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":304}' # _entry.id 8OMF # _exptl.entry_id 8OMF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.625 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description compound _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OMF _cell.length_a 83.36 _cell.length_b 86.89 _cell.length_c 137.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # _chem_comp.formula 'C29 H30 N2 O3 S' _chem_comp.formula_weight 486.625 _chem_comp.id VTJ _chem_comp.mon_nstd_flag . _chem_comp.name compound _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 S13 VTJ sing 380 n n C1 C2 VTJ doub 381 n y C1 C4 VTJ sing 382 n y S13 O14 VTJ doub 383 n n S13 O16 VTJ doub 384 n n S13 C4 VTJ sing 385 n n C2 C3 VTJ sing 386 n y C4 C5 VTJ doub 387 n y C3 C6 VTJ doub 388 n y C5 C6 VTJ sing 389 n y C5 C9 VTJ sing 390 n y C6 N7 VTJ sing 391 n y C9 C10 VTJ sing 392 n n C9 C8 VTJ doub 393 n y C10 C11 VTJ sing 394 n n N7 C8 VTJ sing 395 n y C11 C12 VTJ sing 396 n n C8 C18 VTJ sing 397 n n C12 C17 VTJ sing 398 n n C18 C17 VTJ doub 399 n y C18 C19 VTJ sing 400 n y C17 C22 VTJ sing 401 n y C19 C20 VTJ doub 402 n y C22 C21 VTJ doub 403 n y C20 C21 VTJ sing 404 n y C20 C23 VTJ sing 405 n n C23 N24 VTJ sing 406 n n O35 C27 VTJ sing 407 n n C25 N24 VTJ sing 408 n n C25 C26 VTJ sing 409 n n N24 C28 VTJ sing 410 n n C26 C27 VTJ sing 411 n n C27 C28 VTJ sing 412 n n C27 C29 VTJ sing 413 n n C34 C29 VTJ doub 414 n y C34 C33 VTJ sing 415 n y C29 C30 VTJ sing 416 n y C33 C32 VTJ doub 417 n y C30 C31 VTJ doub 418 n y C32 C31 VTJ sing 419 n y C10 H1 VTJ sing 420 n n C10 H2 VTJ sing 421 n n C15 H3 VTJ sing 422 n n C15 H4 VTJ sing 423 n n C15 H5 VTJ sing 424 n n C21 H6 VTJ sing 425 n n C22 H7 VTJ sing 426 n n C26 H8 VTJ sing 427 n n C26 H9 VTJ sing 428 n n C28 H10 VTJ sing 429 n n C28 H11 VTJ sing 430 n n C1 H12 VTJ sing 431 n n C2 H13 VTJ sing 432 n n C3 H14 VTJ sing 433 n n N7 H15 VTJ sing 434 n n C11 H16 VTJ sing 435 n n C11 H17 VTJ sing 436 n n C12 H18 VTJ sing 437 n n C12 H19 VTJ sing 438 n n C19 H20 VTJ sing 439 n n C23 H21 VTJ sing 440 n n C23 H22 VTJ sing 441 n n C25 H24 VTJ sing 442 n n C25 H25 VTJ sing 443 n n C30 H26 VTJ sing 444 n n C31 H27 VTJ sing 445 n n C32 H28 VTJ sing 446 n n C33 H29 VTJ sing 447 n n C34 H30 VTJ sing 448 n n O35 H31 VTJ sing 449 n n # _atom_sites.entry_id 8OMF _atom_sites.fract_transf_matrix[1][1] 0.011996 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 301 1 SO4 SO4 . D 3 VTJ A 1 302 2 VTJ LIG . E 2 SO4 B 1 301 2 SO4 SO4 . F 2 SO4 B 1 302 3 SO4 SO4 . G 2 SO4 B 1 303 4 SO4 SO4 . H 3 VTJ B 1 304 1 VTJ LIG . I 4 HOH A 1 401 184 HOH HOH . I 4 HOH A 2 402 164 HOH HOH . I 4 HOH A 3 403 95 HOH HOH . I 4 HOH A 4 404 91 HOH HOH . I 4 HOH A 5 405 6 HOH HOH . I 4 HOH A 6 406 50 HOH HOH . I 4 HOH A 7 407 72 HOH HOH . I 4 HOH A 8 408 20 HOH HOH . I 4 HOH A 9 409 29 HOH HOH . I 4 HOH A 10 410 65 HOH HOH . I 4 HOH A 11 411 86 HOH HOH . I 4 HOH A 12 412 143 HOH HOH . I 4 HOH A 13 413 138 HOH HOH . I 4 HOH A 14 414 17 HOH HOH . I 4 HOH A 15 415 58 HOH HOH . I 4 HOH A 16 416 203 HOH HOH . I 4 HOH A 17 417 84 HOH HOH . I 4 HOH A 18 418 142 HOH HOH . I 4 HOH A 19 419 7 HOH HOH . I 4 HOH A 20 420 77 HOH HOH . I 4 HOH A 21 421 82 HOH HOH . I 4 HOH A 22 422 13 HOH HOH . I 4 HOH A 23 423 81 HOH HOH . I 4 HOH A 24 424 60 HOH HOH . I 4 HOH A 25 425 75 HOH HOH . I 4 HOH A 26 426 175 HOH HOH . I 4 HOH A 27 427 14 HOH HOH . I 4 HOH A 28 428 51 HOH HOH . I 4 HOH A 29 429 32 HOH HOH . I 4 HOH A 30 430 78 HOH HOH . I 4 HOH A 31 431 62 HOH HOH . I 4 HOH A 32 432 178 HOH HOH . I 4 HOH A 33 433 21 HOH HOH . I 4 HOH A 34 434 205 HOH HOH . I 4 HOH A 35 435 37 HOH HOH . I 4 HOH A 36 436 46 HOH HOH . I 4 HOH A 37 437 135 HOH HOH . I 4 HOH A 38 438 295 HOH HOH . I 4 HOH A 39 439 42 HOH HOH . I 4 HOH A 40 440 80 HOH HOH . I 4 HOH A 41 441 141 HOH HOH . I 4 HOH A 42 442 301 HOH HOH . I 4 HOH A 43 443 287 HOH HOH . I 4 HOH A 44 444 98 HOH HOH . I 4 HOH A 45 445 118 HOH HOH . I 4 HOH A 46 446 24 HOH HOH . I 4 HOH A 47 447 71 HOH HOH . I 4 HOH A 48 448 128 HOH HOH . I 4 HOH A 49 449 308 HOH HOH . I 4 HOH A 50 450 206 HOH HOH . I 4 HOH A 51 451 211 HOH HOH . I 4 HOH A 52 452 253 HOH HOH . I 4 HOH A 53 453 194 HOH HOH . I 4 HOH A 54 454 262 HOH HOH . I 4 HOH A 55 455 224 HOH HOH . I 4 HOH A 56 456 199 HOH HOH . I 4 HOH A 57 457 196 HOH HOH . I 4 HOH A 58 458 187 HOH HOH . J 4 HOH B 1 401 303 HOH HOH . J 4 HOH B 2 402 3 HOH HOH . J 4 HOH B 3 403 41 HOH HOH . J 4 HOH B 4 404 8 HOH HOH . J 4 HOH B 5 405 63 HOH HOH . J 4 HOH B 6 406 44 HOH HOH . J 4 HOH B 7 407 22 HOH HOH . J 4 HOH B 8 408 30 HOH HOH . J 4 HOH B 9 409 39 HOH HOH . J 4 HOH B 10 410 179 HOH HOH . J 4 HOH B 11 411 47 HOH HOH . J 4 HOH B 12 412 4 HOH HOH . J 4 HOH B 13 413 56 HOH HOH . J 4 HOH B 14 414 296 HOH HOH . J 4 HOH B 15 415 48 HOH HOH . J 4 HOH B 16 416 1 HOH HOH . J 4 HOH B 17 417 309 HOH HOH . J 4 HOH B 18 418 23 HOH HOH . J 4 HOH B 19 419 31 HOH HOH . J 4 HOH B 20 420 9 HOH HOH . J 4 HOH B 21 421 52 HOH HOH . J 4 HOH B 22 422 53 HOH HOH . J 4 HOH B 23 423 36 HOH HOH . J 4 HOH B 24 424 11 HOH HOH . J 4 HOH B 25 425 28 HOH HOH . J 4 HOH B 26 426 54 HOH HOH . J 4 HOH B 27 427 172 HOH HOH . J 4 HOH B 28 428 64 HOH HOH . J 4 HOH B 29 429 96 HOH HOH . J 4 HOH B 30 430 55 HOH HOH . J 4 HOH B 31 431 114 HOH HOH . J 4 HOH B 32 432 40 HOH HOH . J 4 HOH B 33 433 107 HOH HOH . J 4 HOH B 34 434 101 HOH HOH . J 4 HOH B 35 435 2 HOH HOH . J 4 HOH B 36 436 61 HOH HOH . J 4 HOH B 37 437 5 HOH HOH . J 4 HOH B 38 438 195 HOH HOH . J 4 HOH B 39 439 83 HOH HOH . J 4 HOH B 40 440 73 HOH HOH . J 4 HOH B 41 441 70 HOH HOH . J 4 HOH B 42 442 19 HOH HOH . J 4 HOH B 43 443 132 HOH HOH . J 4 HOH B 44 444 79 HOH HOH . J 4 HOH B 45 445 66 HOH HOH . J 4 HOH B 46 446 27 HOH HOH . J 4 HOH B 47 447 92 HOH HOH . J 4 HOH B 48 448 38 HOH HOH . J 4 HOH B 49 449 85 HOH HOH . J 4 HOH B 50 450 33 HOH HOH . J 4 HOH B 51 451 147 HOH HOH . J 4 HOH B 52 452 67 HOH HOH . J 4 HOH B 53 453 16 HOH HOH . J 4 HOH B 54 454 210 HOH HOH . J 4 HOH B 55 455 74 HOH HOH . J 4 HOH B 56 456 127 HOH HOH . J 4 HOH B 57 457 228 HOH HOH . J 4 HOH B 58 458 18 HOH HOH . J 4 HOH B 59 459 45 HOH HOH . J 4 HOH B 60 460 25 HOH HOH . J 4 HOH B 61 461 174 HOH HOH . J 4 HOH B 62 462 59 HOH HOH . J 4 HOH B 63 463 26 HOH HOH . J 4 HOH B 64 464 185 HOH HOH . J 4 HOH B 65 465 35 HOH HOH . J 4 HOH B 66 466 145 HOH HOH . J 4 HOH B 67 467 94 HOH HOH . J 4 HOH B 68 468 124 HOH HOH . J 4 HOH B 69 469 218 HOH HOH . J 4 HOH B 70 470 69 HOH HOH . J 4 HOH B 71 471 144 HOH HOH . J 4 HOH B 72 472 10 HOH HOH . J 4 HOH B 73 473 122 HOH HOH . J 4 HOH B 74 474 15 HOH HOH . J 4 HOH B 75 475 102 HOH HOH . J 4 HOH B 76 476 116 HOH HOH . J 4 HOH B 77 477 192 HOH HOH . J 4 HOH B 78 478 297 HOH HOH . J 4 HOH B 79 479 49 HOH HOH . J 4 HOH B 80 480 197 HOH HOH . J 4 HOH B 81 481 90 HOH HOH . J 4 HOH B 82 482 97 HOH HOH . J 4 HOH B 83 483 176 HOH HOH . J 4 HOH B 84 484 111 HOH HOH . J 4 HOH B 85 485 34 HOH HOH . J 4 HOH B 86 486 265 HOH HOH . J 4 HOH B 87 487 241 HOH HOH . J 4 HOH B 88 488 103 HOH HOH . J 4 HOH B 89 489 215 HOH HOH . J 4 HOH B 90 490 117 HOH HOH . J 4 HOH B 91 491 233 HOH HOH . J 4 HOH B 92 492 181 HOH HOH . J 4 HOH B 93 493 229 HOH HOH . J 4 HOH B 94 494 200 HOH HOH . J 4 HOH B 95 495 193 HOH HOH . J 4 HOH B 96 496 274 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 VTJ . . . H 3 -23.021 23.251 57.283 1 48.39 ? C4 VTJ 304 B 1 HETATM 2 C C5 VTJ . . . H 3 -23.915 23.103 56.177 1 51.45 ? C5 VTJ 304 B 1 HETATM 3 C C6 VTJ . . . H 3 -23.597 22.08 55.251 1 51.8 ? C6 VTJ 304 B 1 HETATM 4 C C8 VTJ . . . H 3 -25.479 23.075 54.516 1 56.44 ? C8 VTJ 304 B 1 HETATM 5 C C10 VTJ . . . H 3 -25.85 24.846 56.417 1 54.09 ? C10 VTJ 304 B 1 HETATM 6 C C15 VTJ . . . H 3 -21.816 24.271 59.603 1 42.72 ? C15 VTJ 304 B 1 HETATM 7 C C17 VTJ . . . H 3 -27.073 24.65 53.391 1 58.14 ? C17 VTJ 304 B 1 HETATM 8 C C20 VTJ . . . H 3 -28.162 22.498 51.924 1 63.26 ? C20 VTJ 304 B 1 HETATM 9 C C21 VTJ . . . H 3 -28.633 23.794 51.749 1 62.44 ? C21 VTJ 304 B 1 HETATM 10 C C22 VTJ . . . H 3 -28.123 24.844 52.494 1 61.75 ? C22 VTJ 304 B 1 HETATM 11 C C26 VTJ . . . H 3 -27.624 20.174 47.761 1 71.63 ? C26 VTJ 304 B 1 HETATM 12 C C28 VTJ . . . H 3 -27.138 22.022 49.156 1 70.34 ? C28 VTJ 304 B 1 HETATM 13 C C1 VTJ . . . H 3 -21.93 22.403 57.432 1 48.19 ? C1 VTJ 304 B 1 HETATM 14 C C2 VTJ . . . H 3 -21.655 21.421 56.488 1 48.62 ? C2 VTJ 304 B 1 HETATM 15 C C3 VTJ . . . H 3 -22.478 21.255 55.387 1 48.63 ? C3 VTJ 304 B 1 HETATM 16 N N7 VTJ . . . H 3 -24.514 22.135 54.223 1 54.13 ? N7 VTJ 304 B 1 HETATM 17 C C9 VTJ . . . H 3 -25.138 23.746 55.672 1 53.79 ? C9 VTJ 304 B 1 HETATM 18 C C11 VTJ . . . H 3 -26.845 25.754 55.675 1 54.49 ? C11 VTJ 304 B 1 HETATM 19 C C12 VTJ . . . H 3 -26.575 25.844 54.167 1 56.54 ? C12 VTJ 304 B 1 HETATM 20 S S13 VTJ . . . H 3 -23.269 24.368 58.645 1 50.54 ? S13 VTJ 304 B 1 HETATM 21 O O14 VTJ . . . H 3 -24.358 23.861 59.435 1 54.41 ? O14 VTJ 304 B 1 HETATM 22 O O16 VTJ . . . H 3 -23.384 25.7 58.124 1 48.71 ? O16 VTJ 304 B 1 HETATM 23 C C18 VTJ . . . H 3 -26.6 23.341 53.6 1 57.83 ? C18 VTJ 304 B 1 HETATM 24 C C19 VTJ . . . H 3 -27.138 22.288 52.846 1 59.86 ? C19 VTJ 304 B 1 HETATM 25 C C23 VTJ . . . H 3 -28.69 21.369 51.08 1 64.52 ? C23 VTJ 304 B 1 HETATM 26 N N24 VTJ . . . H 3 -27.689 20.878 50.057 1 68.26 ? N24 VTJ 304 B 1 HETATM 27 C C25 VTJ . . . H 3 -28.25 19.848 49.106 1 70.62 ? C25 VTJ 304 B 1 HETATM 28 C C27 VTJ . . . H 3 -27.57 21.704 47.697 1 72.75 ? C27 VTJ 304 B 1 HETATM 29 C C29 VTJ . . . H 3 -26.614 22.301 46.666 1 75.07 ? C29 VTJ 304 B 1 HETATM 30 C C30 VTJ . . . H 3 -27.069 23.228 45.726 1 74.22 ? C30 VTJ 304 B 1 HETATM 31 C C31 VTJ . . . H 3 -26.192 23.817 44.826 1 74.98 ? C31 VTJ 304 B 1 HETATM 32 C C32 VTJ . . . H 3 -24.844 23.501 44.858 1 77.14 ? C32 VTJ 304 B 1 HETATM 33 C C33 VTJ . . . H 3 -24.37 22.608 45.807 1 77.74 ? C33 VTJ 304 B 1 HETATM 34 C C34 VTJ . . . H 3 -25.246 22.018 46.707 1 76.64 ? C34 VTJ 304 B 1 HETATM 35 O O35 VTJ . . . H 3 -28.891 22.253 47.632 1 73.51 ? O35 VTJ 304 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #