data_8OMI # _model_server_result.job_id StVlysp19EKdi4ChIsnhFA _model_server_result.datetime_utc '2024-11-14 04:12:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8omi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 8OMI # _exptl.entry_id 8OMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OMI _cell.length_a 102.82 _cell.length_b 102.82 _cell.length_c 111.61 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 209 A ASP 231 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc2 A OD1 ASP 209 A ASP 231 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc3 A OD2 ASP 209 A ASP 231 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc4 B MG MG . A MG 301 1_555 D O1G ATP . A ATP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc5 B MG MG . A MG 301 1_555 H O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc6 B MG MG . A MG 301 1_555 H O HOH . A HOH 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc7 B MG MG . A MG 301 1_555 H O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc8 B MG MG . A MG 301 1_555 H O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc9 C MG MG . A MG 302 1_555 D O2G ATP . A ATP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc10 C MG MG . A MG 302 1_555 D O2B ATP . A ATP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc11 C MG MG . A MG 302 1_555 H O HOH . A HOH 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc12 C MG MG . A MG 302 1_555 H O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 138 n n C1 C2 EDO sing 139 n n C1 H11 EDO sing 140 n n C1 H12 EDO sing 141 n n O1 HO1 EDO sing 142 n n C2 O2 EDO sing 143 n n C2 H21 EDO sing 144 n n C2 H22 EDO sing 145 n n O2 HO2 EDO sing 146 n n # _atom_sites.entry_id 8OMI _atom_sites.fract_transf_matrix[1][1] 0.009726 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 1 MG MG . C 2 MG A 1 302 2 MG MG . D 3 ATP A 1 303 1 ATP ATP . E 4 ACT A 1 304 1 ACT ACT . F 4 ACT A 1 305 2 ACT ACT . G 5 EDO A 1 306 1 EDO EDO . H 6 HOH A 1 401 81 HOH HOH . H 6 HOH A 2 402 150 HOH HOH . H 6 HOH A 3 403 107 HOH HOH . H 6 HOH A 4 404 51 HOH HOH . H 6 HOH A 5 405 106 HOH HOH . H 6 HOH A 6 406 97 HOH HOH . H 6 HOH A 7 407 120 HOH HOH . H 6 HOH A 8 408 103 HOH HOH . H 6 HOH A 9 409 121 HOH HOH . H 6 HOH A 10 410 18 HOH HOH . H 6 HOH A 11 411 154 HOH HOH . H 6 HOH A 12 412 105 HOH HOH . H 6 HOH A 13 413 7 HOH HOH . H 6 HOH A 14 414 92 HOH HOH . H 6 HOH A 15 415 5 HOH HOH . H 6 HOH A 16 416 57 HOH HOH . H 6 HOH A 17 417 113 HOH HOH . H 6 HOH A 18 418 32 HOH HOH . H 6 HOH A 19 419 23 HOH HOH . H 6 HOH A 20 420 24 HOH HOH . H 6 HOH A 21 421 66 HOH HOH . H 6 HOH A 22 422 3 HOH HOH . H 6 HOH A 23 423 161 HOH HOH . H 6 HOH A 24 424 37 HOH HOH . H 6 HOH A 25 425 39 HOH HOH . H 6 HOH A 26 426 20 HOH HOH . H 6 HOH A 27 427 62 HOH HOH . H 6 HOH A 28 428 129 HOH HOH . H 6 HOH A 29 429 43 HOH HOH . H 6 HOH A 30 430 14 HOH HOH . H 6 HOH A 31 431 104 HOH HOH . H 6 HOH A 32 432 15 HOH HOH . H 6 HOH A 33 433 33 HOH HOH . H 6 HOH A 34 434 13 HOH HOH . H 6 HOH A 35 435 87 HOH HOH . H 6 HOH A 36 436 131 HOH HOH . H 6 HOH A 37 437 185 HOH HOH . H 6 HOH A 38 438 146 HOH HOH . H 6 HOH A 39 439 177 HOH HOH . H 6 HOH A 40 440 22 HOH HOH . H 6 HOH A 41 441 139 HOH HOH . H 6 HOH A 42 442 11 HOH HOH . H 6 HOH A 43 443 77 HOH HOH . H 6 HOH A 44 444 94 HOH HOH . H 6 HOH A 45 445 6 HOH HOH . H 6 HOH A 46 446 128 HOH HOH . H 6 HOH A 47 447 44 HOH HOH . H 6 HOH A 48 448 67 HOH HOH . H 6 HOH A 49 449 98 HOH HOH . H 6 HOH A 50 450 10 HOH HOH . H 6 HOH A 51 451 86 HOH HOH . H 6 HOH A 52 452 34 HOH HOH . H 6 HOH A 53 453 170 HOH HOH . H 6 HOH A 54 454 167 HOH HOH . H 6 HOH A 55 455 1 HOH HOH . H 6 HOH A 56 456 52 HOH HOH . H 6 HOH A 57 457 65 HOH HOH . H 6 HOH A 58 458 53 HOH HOH . H 6 HOH A 59 459 125 HOH HOH . H 6 HOH A 60 460 58 HOH HOH . H 6 HOH A 61 461 17 HOH HOH . H 6 HOH A 62 462 9 HOH HOH . H 6 HOH A 63 463 91 HOH HOH . H 6 HOH A 64 464 27 HOH HOH . H 6 HOH A 65 465 148 HOH HOH . H 6 HOH A 66 466 127 HOH HOH . H 6 HOH A 67 467 85 HOH HOH . H 6 HOH A 68 468 50 HOH HOH . H 6 HOH A 69 469 38 HOH HOH . H 6 HOH A 70 470 178 HOH HOH . H 6 HOH A 71 471 12 HOH HOH . H 6 HOH A 72 472 149 HOH HOH . H 6 HOH A 73 473 133 HOH HOH . H 6 HOH A 74 474 19 HOH HOH . H 6 HOH A 75 475 4 HOH HOH . H 6 HOH A 76 476 147 HOH HOH . H 6 HOH A 77 477 172 HOH HOH . H 6 HOH A 78 478 41 HOH HOH . H 6 HOH A 79 479 64 HOH HOH . H 6 HOH A 80 480 8 HOH HOH . H 6 HOH A 81 481 30 HOH HOH . H 6 HOH A 82 482 16 HOH HOH . H 6 HOH A 83 483 56 HOH HOH . H 6 HOH A 84 484 102 HOH HOH . H 6 HOH A 85 485 83 HOH HOH . H 6 HOH A 86 486 82 HOH HOH . H 6 HOH A 87 487 88 HOH HOH . H 6 HOH A 88 488 96 HOH HOH . H 6 HOH A 89 489 2 HOH HOH . H 6 HOH A 90 490 40 HOH HOH . H 6 HOH A 91 491 71 HOH HOH . H 6 HOH A 92 492 156 HOH HOH . H 6 HOH A 93 493 25 HOH HOH . H 6 HOH A 94 494 70 HOH HOH . H 6 HOH A 95 495 179 HOH HOH . H 6 HOH A 96 496 119 HOH HOH . H 6 HOH A 97 497 55 HOH HOH . H 6 HOH A 98 498 45 HOH HOH . H 6 HOH A 99 499 35 HOH HOH . H 6 HOH A 100 500 69 HOH HOH . H 6 HOH A 101 501 93 HOH HOH . H 6 HOH A 102 502 49 HOH HOH . H 6 HOH A 103 503 176 HOH HOH . H 6 HOH A 104 504 76 HOH HOH . H 6 HOH A 105 505 140 HOH HOH . H 6 HOH A 106 506 61 HOH HOH . H 6 HOH A 107 507 80 HOH HOH . H 6 HOH A 108 508 42 HOH HOH . H 6 HOH A 109 509 36 HOH HOH . H 6 HOH A 110 510 21 HOH HOH . H 6 HOH A 111 511 166 HOH HOH . H 6 HOH A 112 512 136 HOH HOH . H 6 HOH A 113 513 84 HOH HOH . H 6 HOH A 114 514 99 HOH HOH . H 6 HOH A 115 515 132 HOH HOH . H 6 HOH A 116 516 73 HOH HOH . H 6 HOH A 117 517 89 HOH HOH . H 6 HOH A 118 518 101 HOH HOH . H 6 HOH A 119 519 31 HOH HOH . H 6 HOH A 120 520 78 HOH HOH . H 6 HOH A 121 521 173 HOH HOH . H 6 HOH A 122 522 54 HOH HOH . H 6 HOH A 123 523 181 HOH HOH . H 6 HOH A 124 524 189 HOH HOH . H 6 HOH A 125 525 26 HOH HOH . H 6 HOH A 126 526 90 HOH HOH . H 6 HOH A 127 527 68 HOH HOH . H 6 HOH A 128 528 95 HOH HOH . H 6 HOH A 129 529 59 HOH HOH . H 6 HOH A 130 530 162 HOH HOH . H 6 HOH A 131 531 117 HOH HOH . H 6 HOH A 132 532 151 HOH HOH . H 6 HOH A 133 533 135 HOH HOH . H 6 HOH A 134 534 187 HOH HOH . H 6 HOH A 135 535 108 HOH HOH . H 6 HOH A 136 536 165 HOH HOH . H 6 HOH A 137 537 29 HOH HOH . H 6 HOH A 138 538 48 HOH HOH . H 6 HOH A 139 539 72 HOH HOH . H 6 HOH A 140 540 169 HOH HOH . H 6 HOH A 141 541 28 HOH HOH . H 6 HOH A 142 542 145 HOH HOH . H 6 HOH A 143 543 116 HOH HOH . H 6 HOH A 144 544 122 HOH HOH . H 6 HOH A 145 545 46 HOH HOH . H 6 HOH A 146 546 60 HOH HOH . H 6 HOH A 147 547 155 HOH HOH . H 6 HOH A 148 548 74 HOH HOH . H 6 HOH A 149 549 137 HOH HOH . H 6 HOH A 150 550 157 HOH HOH . H 6 HOH A 151 551 141 HOH HOH . H 6 HOH A 152 552 63 HOH HOH . H 6 HOH A 153 553 75 HOH HOH . H 6 HOH A 154 554 184 HOH HOH . H 6 HOH A 155 555 47 HOH HOH . H 6 HOH A 156 556 158 HOH HOH . H 6 HOH A 157 557 180 HOH HOH . H 6 HOH A 158 558 142 HOH HOH . H 6 HOH A 159 559 100 HOH HOH . H 6 HOH A 160 560 118 HOH HOH . H 6 HOH A 161 561 186 HOH HOH . H 6 HOH A 162 562 164 HOH HOH . H 6 HOH A 163 563 123 HOH HOH . H 6 HOH A 164 564 112 HOH HOH . H 6 HOH A 165 565 126 HOH HOH . H 6 HOH A 166 566 152 HOH HOH . H 6 HOH A 167 567 109 HOH HOH . H 6 HOH A 168 568 182 HOH HOH . H 6 HOH A 169 569 171 HOH HOH . H 6 HOH A 170 570 79 HOH HOH . H 6 HOH A 171 571 115 HOH HOH . H 6 HOH A 172 572 124 HOH HOH . H 6 HOH A 173 573 188 HOH HOH . H 6 HOH A 174 574 174 HOH HOH . H 6 HOH A 175 575 111 HOH HOH . H 6 HOH A 176 576 159 HOH HOH . H 6 HOH A 177 577 138 HOH HOH . H 6 HOH A 178 578 144 HOH HOH . H 6 HOH A 179 579 130 HOH HOH . H 6 HOH A 180 580 114 HOH HOH . H 6 HOH A 181 581 168 HOH HOH . H 6 HOH A 182 582 175 HOH HOH . H 6 HOH A 183 583 160 HOH HOH . H 6 HOH A 184 584 110 HOH HOH . H 6 HOH A 185 585 134 HOH HOH . H 6 HOH A 186 586 143 HOH HOH . H 6 HOH A 187 587 153 HOH HOH . H 6 HOH A 188 588 163 HOH HOH . H 6 HOH A 189 589 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 5 25.197 -1.139 21.049 1 44.85 ? C1 EDO 306 A 1 HETATM 2 O O1 EDO . . . G 5 26.362 -0.773 21.797 1 52.41 ? O1 EDO 306 A 1 HETATM 3 C C2 EDO . . . G 5 24.111 -0.089 21.253 1 40.33 ? C2 EDO 306 A 1 HETATM 4 O O2 EDO . . . G 5 23.786 -0.002 22.645 1 46.9 ? O2 EDO 306 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #