data_8OMM
#
_model_server_result.job_id            9Cb1YZae1NYmhq9cx-faDA 
_model_server_result.datetime_utc      '2024-11-20 17:42:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8omm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    8OMM 
#
_exptl.entry_id    8OMM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.22 
_cell.angle_gamma         90 
_cell.entry_id            8OMM 
_cell.length_a            37.158 
_cell.length_b            67.73 
_cell.length_c            62.494 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OMM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 12 A TYR 12 1_555 F FE FE2 . A FE2 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc2 E N1 HT9 . A HT9 404 1_555 F FE FE2 . A FE2 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc3 E N2 HT9 . A HT9 404 1_555 F FE FE2 . A FE2 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc4 E N3 HT9 . A HT9 404 1_555 F FE FE2 . A FE2 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? 
metalc ? metalc5 E N4 HT9 . A HT9 404 1_555 F FE FE2 . A FE2 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc6 G MG MG . A MG 406 1_555 H O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? 
metalc ? metalc7 G MG MG . A MG 406 1_555 H O HOH . A HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc8 G MG MG . A MG 406 1_555 H O HOH . A HOH 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc9 G MG MG . A MG 406 1_555 H O HOH . A HOH 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     8OMM 
_atom_sites.fract_transf_matrix[1][1]    0.026912 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006322 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014765 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016437 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 401 406 GOL GOL . 
C 3 EDO A 1 402 409 EDO EDO . 
D 2 GOL A 1 403 410 GOL GOL . 
E 4 HT9 A 1 404 411 HT9 VEC . 
F 5 FE2 A 1 405 412 FE2 FE . 
G 6 MG A 1 406 1 MG MG . 
H 7 HOH A 1 501 22 HOH HOH . 
H 7 HOH A 2 502 65 HOH HOH . 
H 7 HOH A 3 503 14 HOH HOH . 
H 7 HOH A 4 504 2 HOH HOH . 
H 7 HOH A 5 505 61 HOH HOH . 
H 7 HOH A 6 506 5 HOH HOH . 
H 7 HOH A 7 507 39 HOH HOH . 
H 7 HOH A 8 508 7 HOH HOH . 
H 7 HOH A 9 509 34 HOH HOH . 
H 7 HOH A 10 510 55 HOH HOH . 
H 7 HOH A 11 511 47 HOH HOH . 
H 7 HOH A 12 512 35 HOH HOH . 
H 7 HOH A 13 513 26 HOH HOH . 
H 7 HOH A 14 514 8 HOH HOH . 
H 7 HOH A 15 515 1 HOH HOH . 
H 7 HOH A 16 516 32 HOH HOH . 
H 7 HOH A 17 517 27 HOH HOH . 
H 7 HOH A 18 518 19 HOH HOH . 
H 7 HOH A 19 519 25 HOH HOH . 
H 7 HOH A 20 520 15 HOH HOH . 
H 7 HOH A 21 521 4 HOH HOH . 
H 7 HOH A 22 522 30 HOH HOH . 
H 7 HOH A 23 523 66 HOH HOH . 
H 7 HOH A 24 524 16 HOH HOH . 
H 7 HOH A 25 525 37 HOH HOH . 
H 7 HOH A 26 526 44 HOH HOH . 
H 7 HOH A 27 527 6 HOH HOH . 
H 7 HOH A 28 528 12 HOH HOH . 
H 7 HOH A 29 529 53 HOH HOH . 
H 7 HOH A 30 530 62 HOH HOH . 
H 7 HOH A 31 531 36 HOH HOH . 
H 7 HOH A 32 532 43 HOH HOH . 
H 7 HOH A 33 533 9 HOH HOH . 
H 7 HOH A 34 534 33 HOH HOH . 
H 7 HOH A 35 535 59 HOH HOH . 
H 7 HOH A 36 536 3 HOH HOH . 
H 7 HOH A 37 537 11 HOH HOH . 
H 7 HOH A 38 538 56 HOH HOH . 
H 7 HOH A 39 539 21 HOH HOH . 
H 7 HOH A 40 540 13 HOH HOH . 
H 7 HOH A 41 541 63 HOH HOH . 
H 7 HOH A 42 542 29 HOH HOH . 
H 7 HOH A 43 543 10 HOH HOH . 
H 7 HOH A 44 544 31 HOH HOH . 
H 7 HOH A 45 545 28 HOH HOH . 
H 7 HOH A 46 546 41 HOH HOH . 
H 7 HOH A 47 547 18 HOH HOH . 
H 7 HOH A 48 548 40 HOH HOH . 
H 7 HOH A 49 549 57 HOH HOH . 
H 7 HOH A 50 550 38 HOH HOH . 
H 7 HOH A 51 551 23 HOH HOH . 
H 7 HOH A 52 552 20 HOH HOH . 
H 7 HOH A 53 553 58 HOH HOH . 
H 7 HOH A 54 554 49 HOH HOH . 
H 7 HOH A 55 555 60 HOH HOH . 
H 7 HOH A 56 556 48 HOH HOH . 
H 7 HOH A 57 557 45 HOH HOH . 
H 7 HOH A 58 558 46 HOH HOH . 
H 7 HOH A 59 559 24 HOH HOH . 
H 7 HOH A 60 560 17 HOH HOH . 
H 7 HOH A 61 561 52 HOH HOH . 
H 7 HOH A 62 562 54 HOH HOH . 
H 7 HOH A 63 563 50 HOH HOH . 
H 7 HOH A 64 564 42 HOH HOH . 
H 7 HOH A 65 565 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 11.152 2.281 -2.473 1 62.68 ? C1 GOL 401 A 1 
HETATM 2 O O1 GOL . . . B 2 11.629 3.579 -2.604 1 67.96 ? O1 GOL 401 A 1 
HETATM 3 C C2 GOL . . . B 2 11.512 1.827 -1.049 1 57.65 ? C2 GOL 401 A 1 
HETATM 4 O O2 GOL . . . B 2 11.264 2.823 -0.119 1 60.81 ? O2 GOL 401 A 1 
HETATM 5 C C3 GOL . . . B 2 13.01 1.441 -1.115 1 61.38 ? C3 GOL 401 A 1 
HETATM 6 O O3 GOL . . . B 2 13.307 0.79 0.086 1 54.07 ? O3 GOL 401 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           6 
#