data_8OMS # _model_server_result.job_id dBfTDlkRw4OjgHcJwwtSQA _model_server_result.datetime_utc '2024-10-18 17:21:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oms # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8OMS # _exptl.entry_id 8OMS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 387.281 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description bis-[(1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)]-V(IV)O2 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OMS _cell.length_a 77.59 _cell.length_b 77.59 _cell.length_c 37.58 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OMS _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C16 H20 N2 O6 V 2' _chem_comp.formula_weight 387.281 _chem_comp.id VTU _chem_comp.mon_nstd_flag . _chem_comp.name bis-[(1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)]-V(IV)O2 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2,2'-diethyl-3,3'-dimethyl-8,8'-spirobi[7$l^{3},9-dioxa-3-aza-8$l^{8}-vanadabicyclo[4.3.0]nona-1,4,6-triene] 8,8-dioxide" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C3 VTU doub 376 n n C5 NA1 VTU sing 377 n n C3 C2 VTU sing 378 n n CN2 NA2 VTU sing 379 n n CN1 NA1 VTU sing 380 n n NA1 C4 VTU sing 381 n n NA2 C12 VTU sing 382 n n NA2 C11 VTU sing 383 n n C12 C10 VTU doub 384 n n C2 O1 VTU doub 385 n n C2 C1 VTU sing 386 n n O1 V VTU sing 387 n n C13 C11 VTU sing 388 n n C13 C14 VTU sing 389 n n C11 C8 VTU doub 390 n n C10 C9 VTU sing 391 n n C8 C9 VTU sing 392 n n C8 O4 VTU sing 393 n n C9 O3 VTU doub 394 n n C4 C1 VTU doub 395 n n C4 C6 VTU sing 396 n n C1 O2 VTU sing 397 n n O4 V VTU sing 398 n n O3 V VTU sing 399 n n V O2 VTU sing 400 n n V O6 VTU doub 401 n n V O5 VTU doub 402 n n C6 C7 VTU sing 403 n n C3 H1 VTU sing 404 n n C5 H2 VTU sing 405 n n C6 H3 VTU sing 406 n n C6 H4 VTU sing 407 n n CN1 H7 VTU sing 408 n n CN1 H8 VTU sing 409 n n CN1 H9 VTU sing 410 n n C7 H10 VTU sing 411 n n C7 H11 VTU sing 412 n n C7 H12 VTU sing 413 n n C10 H13 VTU sing 414 n n C12 H14 VTU sing 415 n n CN2 H15 VTU sing 416 n n CN2 H16 VTU sing 417 n n CN2 H17 VTU sing 418 n n C13 H18 VTU sing 419 n n C13 H19 VTU sing 420 n n C14 H20 VTU sing 421 n n C14 H21 VTU sing 422 n n C14 H22 VTU sing 423 n n # _atom_sites.entry_id 8OMS _atom_sites.fract_transf_matrix[1][1] 0.012888 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012888 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VTU AAA 1 201 1 VTU EMR . C 3 HOH AAA 1 301 146 HOH HOH . C 3 HOH AAA 2 302 133 HOH HOH . C 3 HOH AAA 3 303 169 HOH HOH . C 3 HOH AAA 4 304 7 HOH HOH . C 3 HOH AAA 5 305 25 HOH HOH . C 3 HOH AAA 6 306 66 HOH HOH . C 3 HOH AAA 7 307 150 HOH HOH . C 3 HOH AAA 8 308 138 HOH HOH . C 3 HOH AAA 9 309 117 HOH HOH . C 3 HOH AAA 10 310 61 HOH HOH . C 3 HOH AAA 11 311 155 HOH HOH . C 3 HOH AAA 12 312 132 HOH HOH . C 3 HOH AAA 13 313 54 HOH HOH . C 3 HOH AAA 14 314 63 HOH HOH . C 3 HOH AAA 15 315 2 HOH HOH . C 3 HOH AAA 16 316 21 HOH HOH . C 3 HOH AAA 17 317 107 HOH HOH . C 3 HOH AAA 18 318 124 HOH HOH . C 3 HOH AAA 19 319 22 HOH HOH . C 3 HOH AAA 20 320 111 HOH HOH . C 3 HOH AAA 21 321 38 HOH HOH . C 3 HOH AAA 22 322 76 HOH HOH . C 3 HOH AAA 23 323 26 HOH HOH . C 3 HOH AAA 24 324 28 HOH HOH . C 3 HOH AAA 25 325 149 HOH HOH . C 3 HOH AAA 26 326 67 HOH HOH . C 3 HOH AAA 27 327 163 HOH HOH . C 3 HOH AAA 28 328 41 HOH HOH . C 3 HOH AAA 29 329 57 HOH HOH . C 3 HOH AAA 30 330 8 HOH HOH . C 3 HOH AAA 31 331 106 HOH HOH . C 3 HOH AAA 32 332 50 HOH HOH . C 3 HOH AAA 33 333 3 HOH HOH . C 3 HOH AAA 34 334 56 HOH HOH . C 3 HOH AAA 35 335 30 HOH HOH . C 3 HOH AAA 36 336 136 HOH HOH . C 3 HOH AAA 37 337 145 HOH HOH . C 3 HOH AAA 38 338 121 HOH HOH . C 3 HOH AAA 39 339 104 HOH HOH . C 3 HOH AAA 40 340 64 HOH HOH . C 3 HOH AAA 41 341 89 HOH HOH . C 3 HOH AAA 42 342 85 HOH HOH . C 3 HOH AAA 43 343 110 HOH HOH . C 3 HOH AAA 44 344 165 HOH HOH . C 3 HOH AAA 45 345 39 HOH HOH . C 3 HOH AAA 46 346 4 HOH HOH . C 3 HOH AAA 47 347 119 HOH HOH . C 3 HOH AAA 48 348 60 HOH HOH . C 3 HOH AAA 49 349 84 HOH HOH . C 3 HOH AAA 50 350 32 HOH HOH . C 3 HOH AAA 51 351 82 HOH HOH . C 3 HOH AAA 52 352 137 HOH HOH . C 3 HOH AAA 53 353 52 HOH HOH . C 3 HOH AAA 54 354 16 HOH HOH . C 3 HOH AAA 55 355 112 HOH HOH . C 3 HOH AAA 56 356 43 HOH HOH . C 3 HOH AAA 57 357 5 HOH HOH . C 3 HOH AAA 58 358 75 HOH HOH . C 3 HOH AAA 59 359 37 HOH HOH . C 3 HOH AAA 60 360 113 HOH HOH . C 3 HOH AAA 61 361 166 HOH HOH . C 3 HOH AAA 62 362 20 HOH HOH . C 3 HOH AAA 63 363 17 HOH HOH . C 3 HOH AAA 64 364 49 HOH HOH . C 3 HOH AAA 65 365 42 HOH HOH . C 3 HOH AAA 66 366 18 HOH HOH . C 3 HOH AAA 67 367 36 HOH HOH . C 3 HOH AAA 68 368 55 HOH HOH . C 3 HOH AAA 69 369 29 HOH HOH . C 3 HOH AAA 70 370 14 HOH HOH . C 3 HOH AAA 71 371 31 HOH HOH . C 3 HOH AAA 72 372 1 HOH HOH . C 3 HOH AAA 73 373 13 HOH HOH . C 3 HOH AAA 74 374 90 HOH HOH . C 3 HOH AAA 75 375 19 HOH HOH . C 3 HOH AAA 76 376 102 HOH HOH . C 3 HOH AAA 77 377 10 HOH HOH . C 3 HOH AAA 78 378 159 HOH HOH . C 3 HOH AAA 79 379 9 HOH HOH . C 3 HOH AAA 80 380 92 HOH HOH . C 3 HOH AAA 81 381 114 HOH HOH . C 3 HOH AAA 82 382 27 HOH HOH . C 3 HOH AAA 83 383 74 HOH HOH . C 3 HOH AAA 84 384 59 HOH HOH . C 3 HOH AAA 85 385 6 HOH HOH . C 3 HOH AAA 86 386 83 HOH HOH . C 3 HOH AAA 87 387 100 HOH HOH . C 3 HOH AAA 88 388 33 HOH HOH . C 3 HOH AAA 89 389 15 HOH HOH . C 3 HOH AAA 90 390 45 HOH HOH . C 3 HOH AAA 91 391 105 HOH HOH . C 3 HOH AAA 92 392 72 HOH HOH . C 3 HOH AAA 93 393 23 HOH HOH . C 3 HOH AAA 94 394 78 HOH HOH . C 3 HOH AAA 95 395 122 HOH HOH . C 3 HOH AAA 96 396 47 HOH HOH . C 3 HOH AAA 97 397 118 HOH HOH . C 3 HOH AAA 98 398 58 HOH HOH . C 3 HOH AAA 99 399 115 HOH HOH . C 3 HOH AAA 100 400 53 HOH HOH . C 3 HOH AAA 101 401 97 HOH HOH . C 3 HOH AAA 102 402 68 HOH HOH . C 3 HOH AAA 103 403 151 HOH HOH . C 3 HOH AAA 104 404 69 HOH HOH . C 3 HOH AAA 105 405 65 HOH HOH . C 3 HOH AAA 106 406 86 HOH HOH . C 3 HOH AAA 107 407 77 HOH HOH . C 3 HOH AAA 108 408 144 HOH HOH . C 3 HOH AAA 109 409 143 HOH HOH . C 3 HOH AAA 110 410 141 HOH HOH . C 3 HOH AAA 111 411 131 HOH HOH . C 3 HOH AAA 112 412 99 HOH HOH . C 3 HOH AAA 113 413 154 HOH HOH . C 3 HOH AAA 114 414 134 HOH HOH . C 3 HOH AAA 115 415 12 HOH HOH . C 3 HOH AAA 116 416 142 HOH HOH . C 3 HOH AAA 117 417 62 HOH HOH . C 3 HOH AAA 118 418 157 HOH HOH . C 3 HOH AAA 119 419 135 HOH HOH . C 3 HOH AAA 120 420 103 HOH HOH . C 3 HOH AAA 121 421 130 HOH HOH . C 3 HOH AAA 122 422 95 HOH HOH . C 3 HOH AAA 123 423 161 HOH HOH . C 3 HOH AAA 124 424 11 HOH HOH . C 3 HOH AAA 125 425 158 HOH HOH . C 3 HOH AAA 126 426 123 HOH HOH . C 3 HOH AAA 127 427 172 HOH HOH . C 3 HOH AAA 128 428 44 HOH HOH . C 3 HOH AAA 129 429 152 HOH HOH . C 3 HOH AAA 130 430 79 HOH HOH . C 3 HOH AAA 131 431 48 HOH HOH . C 3 HOH AAA 132 432 91 HOH HOH . C 3 HOH AAA 133 433 46 HOH HOH . C 3 HOH AAA 134 434 93 HOH HOH . C 3 HOH AAA 135 435 116 HOH HOH . C 3 HOH AAA 136 436 94 HOH HOH . C 3 HOH AAA 137 437 167 HOH HOH . C 3 HOH AAA 138 438 70 HOH HOH . C 3 HOH AAA 139 439 162 HOH HOH . C 3 HOH AAA 140 440 171 HOH HOH . C 3 HOH AAA 141 441 128 HOH HOH . C 3 HOH AAA 142 442 164 HOH HOH . C 3 HOH AAA 143 443 129 HOH HOH . C 3 HOH AAA 144 444 51 HOH HOH . C 3 HOH AAA 145 445 156 HOH HOH . C 3 HOH AAA 146 446 147 HOH HOH . C 3 HOH AAA 147 447 170 HOH HOH . C 3 HOH AAA 148 448 139 HOH HOH . C 3 HOH AAA 149 449 73 HOH HOH . C 3 HOH AAA 150 450 153 HOH HOH . C 3 HOH AAA 151 451 40 HOH HOH . C 3 HOH AAA 152 452 87 HOH HOH . C 3 HOH AAA 153 453 127 HOH HOH . C 3 HOH AAA 154 454 120 HOH HOH . C 3 HOH AAA 155 455 168 HOH HOH . C 3 HOH AAA 156 456 140 HOH HOH . C 3 HOH AAA 157 457 125 HOH HOH . C 3 HOH AAA 158 458 80 HOH HOH . C 3 HOH AAA 159 459 88 HOH HOH . C 3 HOH AAA 160 460 173 HOH HOH . C 3 HOH AAA 161 461 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 VTU . . . B 2 6.411 -15.939 -18.987 0.4 22.17 0 O1 VTU 201 AAA 1 HETATM 2 C C2 VTU . . . B 2 5.323 -15.228 -19.084 0.4 19.43 0 C2 VTU 201 AAA 1 HETATM 3 C C3 VTU . . . B 2 4.861 -14.606 -20.287 0.4 19.72 0 C3 VTU 201 AAA 1 HETATM 4 C C5 VTU . . . B 2 3.588 -13.916 -20.332 0.4 17.73 0 C5 VTU 201 AAA 1 HETATM 5 C C6 VTU . . . B 2 2.361 -14.267 -16.928 0.4 19.27 0 C6 VTU 201 AAA 1 HETATM 6 V V VTU . . . B 2 6.51 -16.504 -17.058 0.4 17.14 0 V VTU 201 AAA 1 HETATM 7 O O2 VTU . . . B 2 4.905 -15.683 -16.896 0.4 16.98 0 O2 VTU 201 AAA 1 HETATM 8 O O3 VTU . . . B 2 5.812 -17.948 -17.648 0.4 23.52 0 O3 VTU 201 AAA 1 HETATM 9 O O4 VTU . . . B 2 8.181 -17.445 -17.747 0.4 17.97 0 O4 VTU 201 AAA 1 HETATM 10 O O5 VTU . . . B 2 6.585 -16.87 -15.537 0.4 14.78 0 O5 VTU 201 AAA 1 HETATM 11 O O6 VTU . . . B 2 7.434 -15.022 -16.697 0.4 20.28 0 O6 VTU 201 AAA 1 HETATM 12 C C1 VTU . . . B 2 4.45 -15.115 -17.976 0.4 17.19 0 C1 VTU 201 AAA 1 HETATM 13 C C4 VTU . . . B 2 3.212 -14.406 -18.019 0.4 17.59 0 C4 VTU 201 AAA 1 HETATM 14 N NA1 VTU . . . B 2 2.779 -13.795 -19.193 0.4 17.95 0 NA1 VTU 201 AAA 1 HETATM 15 C CN1 VTU . . . B 2 1.541 -13.092 -19.225 0.4 19.7 0 CN1 VTU 201 AAA 1 HETATM 16 C C7 VTU . . . B 2 1.511 -15.385 -16.79 0.4 22.86 0 C7 VTU 201 AAA 1 HETATM 17 C C8 VTU . . . B 2 8.092 -18.609 -18.213 0.4 20.53 0 C8 VTU 201 AAA 1 HETATM 18 C C9 VTU . . . B 2 6.664 -18.886 -18.13 0.4 21.85 0 C9 VTU 201 AAA 1 HETATM 19 C C10 VTU . . . B 2 6.204 -20.095 -18.607 0.4 26.73 0 C10 VTU 201 AAA 1 HETATM 20 C C11 VTU . . . B 2 8.916 -19.589 -18.727 0.4 20.39 0 C11 VTU 201 AAA 1 HETATM 21 C C12 VTU . . . B 2 7.083 -21.057 -19.115 0.4 28.39 0 C12 VTU 201 AAA 1 HETATM 22 N NA2 VTU . . . B 2 8.473 -20.834 -19.171 0.4 23.62 0 NA2 VTU 201 AAA 1 HETATM 23 C CN2 VTU . . . B 2 9.381 -21.774 -19.641 0.4 26.85 0 CN2 VTU 201 AAA 1 HETATM 24 C C13 VTU . . . B 2 10.288 -19.379 -18.749 0.4 25.83 0 C13 VTU 201 AAA 1 HETATM 25 C C14 VTU . . . B 2 10.852 -18.2 -18.311 0.4 39.59 0 C14 VTU 201 AAA 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #