data_8OMT # _model_server_result.job_id l5YPKaxY1RbiyIsfoE_5Dg _model_server_result.datetime_utc '2024-10-18 17:20:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8omt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8OMT # _exptl.entry_id 8OMT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 387.281 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description bis-[(1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)]-V(IV)O2 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OMT _cell.length_a 77.13 _cell.length_b 77.13 _cell.length_c 37.26 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc1 A O SER 60 AAA SER 60 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc2 A O CYS 64 AAA CYS 64 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc3 A OG SER 72 AAA SER 72 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc4 A O ARG 73 AAA ARG 73 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc5 B NA NA . AAA NA 201 1_555 F O HOH . AAA HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc6 B NA NA . AAA NA 201 1_555 F O HOH . AAA HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? # _chem_comp.formula 'C16 H20 N2 O6 V 2' _chem_comp.formula_weight 387.281 _chem_comp.id VTU _chem_comp.mon_nstd_flag . _chem_comp.name bis-[(1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)]-V(IV)O2 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2,2'-diethyl-3,3'-dimethyl-8,8'-spirobi[7$l^{3},9-dioxa-3-aza-8$l^{8}-vanadabicyclo[4.3.0]nona-1,4,6-triene] 8,8-dioxide" # _atom_sites.entry_id 8OMT _atom_sites.fract_transf_matrix[1][1] 0.012965 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA AAA 1 201 131 NA NA . C 3 EPE AAA 1 202 1 EPE EPE . D 4 VTU AAA 1 203 1 VTU EM3 . E 5 VTZ AAA 1 204 2 VTZ ER1 . F 6 HOH AAA 1 301 156 HOH HOH . F 6 HOH AAA 2 302 139 HOH HOH . F 6 HOH AAA 3 303 113 HOH HOH . F 6 HOH AAA 4 304 55 HOH HOH . F 6 HOH AAA 5 305 206 HOH HOH . F 6 HOH AAA 6 306 203 HOH HOH . F 6 HOH AAA 7 307 165 HOH HOH . F 6 HOH AAA 8 308 23 HOH HOH . F 6 HOH AAA 9 309 211 HOH HOH . F 6 HOH AAA 10 310 141 HOH HOH . F 6 HOH AAA 11 311 148 HOH HOH . F 6 HOH AAA 12 312 109 HOH HOH . F 6 HOH AAA 13 313 42 HOH HOH . F 6 HOH AAA 14 314 87 HOH HOH . F 6 HOH AAA 15 315 188 HOH HOH . F 6 HOH AAA 16 316 101 HOH HOH . F 6 HOH AAA 17 317 32 HOH HOH . F 6 HOH AAA 18 318 154 HOH HOH . F 6 HOH AAA 19 319 132 HOH HOH . F 6 HOH AAA 20 320 78 HOH HOH . F 6 HOH AAA 21 321 150 HOH HOH . F 6 HOH AAA 22 322 137 HOH HOH . F 6 HOH AAA 23 323 164 HOH HOH . F 6 HOH AAA 24 324 99 HOH HOH . F 6 HOH AAA 25 325 157 HOH HOH . F 6 HOH AAA 26 326 56 HOH HOH . F 6 HOH AAA 27 327 66 HOH HOH . F 6 HOH AAA 28 328 44 HOH HOH . F 6 HOH AAA 29 329 39 HOH HOH . F 6 HOH AAA 30 330 4 HOH HOH . F 6 HOH AAA 31 331 49 HOH HOH . F 6 HOH AAA 32 332 112 HOH HOH . F 6 HOH AAA 33 333 149 HOH HOH . F 6 HOH AAA 34 334 75 HOH HOH . F 6 HOH AAA 35 335 60 HOH HOH . F 6 HOH AAA 36 336 47 HOH HOH . F 6 HOH AAA 37 337 108 HOH HOH . F 6 HOH AAA 38 338 24 HOH HOH . F 6 HOH AAA 39 339 110 HOH HOH . F 6 HOH AAA 40 340 81 HOH HOH . F 6 HOH AAA 41 341 22 HOH HOH . F 6 HOH AAA 42 342 36 HOH HOH . F 6 HOH AAA 43 343 33 HOH HOH . F 6 HOH AAA 44 344 107 HOH HOH . F 6 HOH AAA 45 345 84 HOH HOH . F 6 HOH AAA 46 346 11 HOH HOH . F 6 HOH AAA 47 347 77 HOH HOH . F 6 HOH AAA 48 348 48 HOH HOH . F 6 HOH AAA 49 349 72 HOH HOH . F 6 HOH AAA 50 350 37 HOH HOH . F 6 HOH AAA 51 351 58 HOH HOH . F 6 HOH AAA 52 352 27 HOH HOH . F 6 HOH AAA 53 353 6 HOH HOH . F 6 HOH AAA 54 354 26 HOH HOH . F 6 HOH AAA 55 355 38 HOH HOH . F 6 HOH AAA 56 356 20 HOH HOH . F 6 HOH AAA 57 357 98 HOH HOH . F 6 HOH AAA 58 358 14 HOH HOH . F 6 HOH AAA 59 359 5 HOH HOH . F 6 HOH AAA 60 360 29 HOH HOH . F 6 HOH AAA 61 361 43 HOH HOH . F 6 HOH AAA 62 362 121 HOH HOH . F 6 HOH AAA 63 363 31 HOH HOH . F 6 HOH AAA 64 364 30 HOH HOH . F 6 HOH AAA 65 365 80 HOH HOH . F 6 HOH AAA 66 366 40 HOH HOH . F 6 HOH AAA 67 367 34 HOH HOH . F 6 HOH AAA 68 368 125 HOH HOH . F 6 HOH AAA 69 369 76 HOH HOH . F 6 HOH AAA 70 370 3 HOH HOH . F 6 HOH AAA 71 371 198 HOH HOH . F 6 HOH AAA 72 372 15 HOH HOH . F 6 HOH AAA 73 373 45 HOH HOH . F 6 HOH AAA 74 374 147 HOH HOH . F 6 HOH AAA 75 375 140 HOH HOH . F 6 HOH AAA 76 376 16 HOH HOH . F 6 HOH AAA 77 377 166 HOH HOH . F 6 HOH AAA 78 378 21 HOH HOH . F 6 HOH AAA 79 379 133 HOH HOH . F 6 HOH AAA 80 380 100 HOH HOH . F 6 HOH AAA 81 381 209 HOH HOH . F 6 HOH AAA 82 382 25 HOH HOH . F 6 HOH AAA 83 383 8 HOH HOH . F 6 HOH AAA 84 384 13 HOH HOH . F 6 HOH AAA 85 385 19 HOH HOH . F 6 HOH AAA 86 386 89 HOH HOH . F 6 HOH AAA 87 387 18 HOH HOH . F 6 HOH AAA 88 388 163 HOH HOH . F 6 HOH AAA 89 389 10 HOH HOH . F 6 HOH AAA 90 390 54 HOH HOH . F 6 HOH AAA 91 391 82 HOH HOH . F 6 HOH AAA 92 392 59 HOH HOH . F 6 HOH AAA 93 393 17 HOH HOH . F 6 HOH AAA 94 394 192 HOH HOH . F 6 HOH AAA 95 395 102 HOH HOH . F 6 HOH AAA 96 396 46 HOH HOH . F 6 HOH AAA 97 397 136 HOH HOH . F 6 HOH AAA 98 398 12 HOH HOH . F 6 HOH AAA 99 399 120 HOH HOH . F 6 HOH AAA 100 400 116 HOH HOH . F 6 HOH AAA 101 401 93 HOH HOH . F 6 HOH AAA 102 402 123 HOH HOH . F 6 HOH AAA 103 403 9 HOH HOH . F 6 HOH AAA 104 404 117 HOH HOH . F 6 HOH AAA 105 405 195 HOH HOH . F 6 HOH AAA 106 406 96 HOH HOH . F 6 HOH AAA 107 407 35 HOH HOH . F 6 HOH AAA 108 408 95 HOH HOH . F 6 HOH AAA 109 409 200 HOH HOH . F 6 HOH AAA 110 410 155 HOH HOH . F 6 HOH AAA 111 411 197 HOH HOH . F 6 HOH AAA 112 412 207 HOH HOH . F 6 HOH AAA 113 413 185 HOH HOH . F 6 HOH AAA 114 414 135 HOH HOH . F 6 HOH AAA 115 415 85 HOH HOH . F 6 HOH AAA 116 416 131 HOH HOH . F 6 HOH AAA 117 417 97 HOH HOH . F 6 HOH AAA 118 418 52 HOH HOH . F 6 HOH AAA 119 419 50 HOH HOH . F 6 HOH AAA 120 420 181 HOH HOH . F 6 HOH AAA 121 421 105 HOH HOH . F 6 HOH AAA 122 422 127 HOH HOH . F 6 HOH AAA 123 423 138 HOH HOH . F 6 HOH AAA 124 424 167 HOH HOH . F 6 HOH AAA 125 425 144 HOH HOH . F 6 HOH AAA 126 426 106 HOH HOH . F 6 HOH AAA 127 427 126 HOH HOH . F 6 HOH AAA 128 428 151 HOH HOH . F 6 HOH AAA 129 429 143 HOH HOH . F 6 HOH AAA 130 430 184 HOH HOH . F 6 HOH AAA 131 431 169 HOH HOH . F 6 HOH AAA 132 432 28 HOH HOH . F 6 HOH AAA 133 433 94 HOH HOH . F 6 HOH AAA 134 434 103 HOH HOH . F 6 HOH AAA 135 435 104 HOH HOH . F 6 HOH AAA 136 436 172 HOH HOH . F 6 HOH AAA 137 437 201 HOH HOH . F 6 HOH AAA 138 438 168 HOH HOH . F 6 HOH AAA 139 439 86 HOH HOH . F 6 HOH AAA 140 440 114 HOH HOH . F 6 HOH AAA 141 441 7 HOH HOH . F 6 HOH AAA 142 442 170 HOH HOH . F 6 HOH AAA 143 443 153 HOH HOH . F 6 HOH AAA 144 444 182 HOH HOH . F 6 HOH AAA 145 445 62 HOH HOH . F 6 HOH AAA 146 446 202 HOH HOH . F 6 HOH AAA 147 447 191 HOH HOH . F 6 HOH AAA 148 448 196 HOH HOH . F 6 HOH AAA 149 449 41 HOH HOH . F 6 HOH AAA 150 450 65 HOH HOH . F 6 HOH AAA 151 451 88 HOH HOH . F 6 HOH AAA 152 452 176 HOH HOH . F 6 HOH AAA 153 453 74 HOH HOH . F 6 HOH AAA 154 454 111 HOH HOH . F 6 HOH AAA 155 455 67 HOH HOH . F 6 HOH AAA 156 456 73 HOH HOH . F 6 HOH AAA 157 457 129 HOH HOH . F 6 HOH AAA 158 458 61 HOH HOH . F 6 HOH AAA 159 459 92 HOH HOH . F 6 HOH AAA 160 460 64 HOH HOH . F 6 HOH AAA 161 461 90 HOH HOH . F 6 HOH AAA 162 462 189 HOH HOH . F 6 HOH AAA 163 463 199 HOH HOH . F 6 HOH AAA 164 464 63 HOH HOH . F 6 HOH AAA 165 465 210 HOH HOH . F 6 HOH AAA 166 466 83 HOH HOH . F 6 HOH AAA 167 467 158 HOH HOH . F 6 HOH AAA 168 468 128 HOH HOH . F 6 HOH AAA 169 469 53 HOH HOH . F 6 HOH AAA 170 470 159 HOH HOH . F 6 HOH AAA 171 471 142 HOH HOH . F 6 HOH AAA 172 472 57 HOH HOH . F 6 HOH AAA 173 473 124 HOH HOH . F 6 HOH AAA 174 474 160 HOH HOH . F 6 HOH AAA 175 475 208 HOH HOH . F 6 HOH AAA 176 476 205 HOH HOH . F 6 HOH AAA 177 477 161 HOH HOH . F 6 HOH AAA 178 478 183 HOH HOH . F 6 HOH AAA 179 479 187 HOH HOH . F 6 HOH AAA 180 480 193 HOH HOH . F 6 HOH AAA 181 481 204 HOH HOH . F 6 HOH AAA 182 482 175 HOH HOH . F 6 HOH AAA 183 483 162 HOH HOH . F 6 HOH AAA 184 484 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 VTU . . . D 4 -6.434 15.795 -0.326 0.8 18.79 0 O1 VTU 203 AAA 1 HETATM 2 C C2 VTU . . . D 4 -5.325 15.121 -0.435 0.8 16.63 0 C2 VTU 203 AAA 1 HETATM 3 C C3 VTU . . . D 4 -4.777 14.397 -1.589 0.8 16.88 0 C3 VTU 203 AAA 1 HETATM 4 C C5 VTU . . . D 4 -3.585 13.637 -1.522 0.8 18.07 0 C5 VTU 203 AAA 1 HETATM 5 C C6 VTU . . . D 4 -2.342 14.157 1.905 0.8 15.63 0 C6 VTU 203 AAA 1 HETATM 6 V V VTU . . . D 4 -6.507 16.528 1.638 0.8 14.51 0 V VTU 203 AAA 1 HETATM 7 O O2 VTU . . . D 4 -4.834 15.626 1.765 0.8 15.45 0 O2 VTU 203 AAA 1 HETATM 8 O O3 VTU . . . D 4 -5.685 18.099 0.955 0.8 17.76 0 O3 VTU 203 AAA 1 HETATM 9 O O4 VTU . . . D 4 -8.118 17.537 0.931 0.8 14.45 0 O4 VTU 203 AAA 1 HETATM 10 O O5 VTU . . . D 4 -6.516 17.12 3.232 0.8 13.48 0 O5 VTU 203 AAA 1 HETATM 11 O O6 VTU . . . D 4 -7.466 15.022 1.972 0.8 19.64 0 O6 VTU 203 AAA 1 HETATM 12 C C1 VTU . . . D 4 -4.43 14.987 0.705 0.8 14.8 0 C1 VTU 203 AAA 1 HETATM 13 C C4 VTU . . . D 4 -3.22 14.24 0.768 0.8 15.18 0 C4 VTU 203 AAA 1 HETATM 14 N NA1 VTU . . . D 4 -2.818 13.551 -0.409 0.8 17.17 0 NA1 VTU 203 AAA 1 HETATM 15 C CN1 VTU . . . D 4 -1.618 12.807 -0.391 0.8 20.23 0 CN1 VTU 203 AAA 1 HETATM 16 C C7 VTU . . . D 4 -1.353 15.143 2.096 0.8 18.25 0 C7 VTU 203 AAA 1 HETATM 17 C C8 VTU . . . D 4 -7.905 18.668 0.484 0.8 14.47 0 C8 VTU 203 AAA 1 HETATM 18 C C9 VTU . . . D 4 -6.538 19.054 0.437 0.8 16.43 0 C9 VTU 203 AAA 1 HETATM 19 C C10 VTU . . . D 4 -6.188 20.294 -0.086 0.8 18.16 0 C10 VTU 203 AAA 1 HETATM 20 C C11 VTU . . . D 4 -8.954 19.467 0.045 0.8 16.39 0 C11 VTU 203 AAA 1 HETATM 21 C C12 VTU . . . D 4 -7.282 21.135 -0.523 0.8 18.51 0 C12 VTU 203 AAA 1 HETATM 22 N NA2 VTU . . . D 4 -8.609 20.743 -0.403 0.8 17.09 0 NA2 VTU 203 AAA 1 HETATM 23 C CN2 VTU . . . D 4 -9.611 21.656 -0.862 0.8 20.32 0 CN2 VTU 203 AAA 1 HETATM 24 C C13 VTU . . . D 4 -10.359 19.137 0.118 0.8 16.64 0 C13 VTU 203 AAA 1 HETATM 25 C C14 VTU . . . D 4 -10.774 18.4 -1.001 0.8 21.83 0 C14 VTU 203 AAA 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 25 #