data_8OMZ # _model_server_result.job_id wK0oOJ_aWAdoQYQNJhWrKw _model_server_result.datetime_utc '2024-10-15 11:20:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8omz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":508}' # _entry.id 8OMZ # _exptl.entry_id 8OMZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.424 _cell.angle_gamma 90 _cell.entry_id 8OMZ _cell.length_a 87.14 _cell.length_b 118.11 _cell.length_c 94.93 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OMZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 26 B CYS 22 1_555 B SG CYS 100 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 26 D CYS 22 1_555 D SG CYS 100 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 8OMZ _atom_sites.fract_transf_matrix[1][1] 0.011476 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002111 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 TRS A 1 501 450 TRS TRS . F 4 BNG A 1 502 455 BNG BNG . G 4 BNG A 1 503 456 BNG BNG . H 4 BNG A 1 504 457 BNG BNG . I 4 BNG A 1 505 458 BNG BNG . J 4 BNG A 1 506 459 BNG BNG . K 4 BNG A 1 507 460 BNG BNG . L 5 1PE A 1 508 703 1PE 1PE . M 4 BNG A 1 509 809 BNG BNG . N 6 DMU A 1 510 851 DMU DMU . O 6 DMU B 1 201 470 DMU DMU . P 3 TRS C 1 501 450 TRS TRS . Q 4 BNG C 1 502 455 BNG BNG . R 4 BNG C 1 503 456 BNG BNG . S 4 BNG C 1 504 461 BNG BNG . T 5 1PE C 1 505 702 1PE 1PE . U 4 BNG C 1 506 801 BNG BNG . V 6 DMU D 1 201 471 DMU DMU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . L 5 7.65 5.744 0.922 1 74.22 ? OH2 1PE 508 A 1 HETATM 2 C C12 1PE . . . L 5 7.504 5.797 2.315 1 72.95 ? C12 1PE 508 A 1 HETATM 3 C C22 1PE . . . L 5 8.354 6.935 2.875 1 72.25 ? C22 1PE 508 A 1 HETATM 4 O OH3 1PE . . . L 5 9.707 6.672 2.634 1 71.4 ? OH3 1PE 508 A 1 HETATM 5 C C13 1PE . . . L 5 11.722 5.64 3.413 1 70.22 ? C13 1PE 508 A 1 HETATM 6 C C23 1PE . . . L 5 10.435 6.37 3.79 1 70.45 ? C23 1PE 508 A 1 HETATM 7 O OH4 1PE . . . L 5 12.642 5.734 4.464 1 69.47 ? OH4 1PE 508 A 1 HETATM 8 C C14 1PE . . . L 5 12.467 6.081 6.824 1 69.72 ? C14 1PE 508 A 1 HETATM 9 C C24 1PE . . . L 5 12.214 5.133 5.653 1 69.42 ? C24 1PE 508 A 1 HETATM 10 O OH5 1PE . . . L 5 11.671 5.705 7.912 1 69.79 ? OH5 1PE 508 A 1 HETATM 11 C C15 1PE . . . L 5 10.227 7.604 7.676 1 72.61 ? C15 1PE 508 A 1 HETATM 12 C C25 1PE . . . L 5 11.11 6.78 8.612 1 70.95 ? C25 1PE 508 A 1 HETATM 13 O OH6 1PE . . . L 5 9.239 8.259 8.419 1 73.78 ? OH6 1PE 508 A 1 HETATM 14 C C16 1PE . . . L 5 7.547 7.854 6.771 1 77.83 ? C16 1PE 508 A 1 HETATM 15 C C26 1PE . . . L 5 8.259 8.888 7.642 1 76.44 ? C26 1PE 508 A 1 HETATM 16 O OH7 1PE . . . L 5 6.398 8.426 6.211 1 78.93 ? OH7 1PE 508 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #