data_8ONA
#
_model_server_result.job_id            tJ1wGmkKT3Rti99CP0uX4w 
_model_server_result.datetime_utc      '2024-11-28 15:29:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ona 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":605}' 
#
_entry.id    8ONA 
#
_exptl.entry_id    8ONA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ONA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ONA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 81 A CYS 80 1_555 A SG CYS 197 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 173 A CYS 172 1_555 A SG CYS 180 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 301 A CYS 300 1_555 A SG CYS 406 A CYS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 A SG CYS 319 A CYS 318 1_555 A SG CYS 402 A CYS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 A SG CYS 323 A CYS 322 1_555 A SG CYS 400 A CYS 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 A SG CYS 332 A CYS 331 1_555 A SG CYS 382 A CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 A SG CYS 334 A CYS 333 1_555 A SG CYS 351 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 A SG CYS 361 A CYS 360 1_555 A SG CYS 369 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 C SG CYS 81 B CYS 80 1_555 C SG CYS 197 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf10 C SG CYS 173 B CYS 172 1_555 C SG CYS 180 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf11 C SG CYS 301 B CYS 300 1_555 C SG CYS 406 B CYS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 C SG CYS 319 B CYS 318 1_555 C SG CYS 402 B CYS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf13 C SG CYS 323 B CYS 322 1_555 C SG CYS 400 B CYS 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf14 C SG CYS 332 B CYS 331 1_555 C SG CYS 382 B CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf15 C SG CYS 334 B CYS 333 1_555 C SG CYS 351 B CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf16 C SG CYS 361 B CYS 360 1_555 C SG CYS 369 B CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf17 D SG CYS 81 C CYS 80 1_555 D SG CYS 197 C CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf18 D SG CYS 173 C CYS 172 1_555 D SG CYS 180 C CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf19 D SG CYS 301 C CYS 300 1_555 D SG CYS 406 C CYS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf20 D SG CYS 319 C CYS 318 1_555 D SG CYS 402 C CYS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf21 D SG CYS 323 C CYS 322 1_555 D SG CYS 400 C CYS 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf22 D SG CYS 332 C CYS 331 1_555 D SG CYS 382 C CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf23 D SG CYS 334 C CYS 333 1_555 D SG CYS 351 C CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf24 D SG CYS 361 C CYS 360 1_555 D SG CYS 369 C CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 181 A ASN 180 1_555 G C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 A ND2 ASN 300 A ASN 299 1_555 H C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale3 A ND2 ASN 393 A ASN 392 1_555 I C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale4 A ND2 ASN 445 A ASN 444 1_555 J C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale5 A ND2 ASN 461 A ASN 460 1_555 K C1 NAG . A NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale6 B C PHE 4 D PHE 612 1_555 B N NH2 5 D NH2 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale7 C ND2 ASN 181 B ASN 180 1_555 L C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale8 C ND2 ASN 300 B ASN 299 1_555 M C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale9 C ND2 ASN 393 B ASN 392 1_555 N C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale10 C ND2 ASN 445 B ASN 444 1_555 O C1 NAG . B NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale11 C ND2 ASN 461 B ASN 460 1_555 P C1 NAG . B NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale12 D ND2 ASN 181 C ASN 180 1_555 Q C1 NAG . C NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale13 D ND2 ASN 300 C ASN 299 1_555 R C1 NAG . C NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale14 D ND2 ASN 393 C ASN 392 1_555 S C1 NAG . C NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale15 D ND2 ASN 445 C ASN 444 1_555 T C1 NAG . C NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale16 D ND2 ASN 461 C ASN 460 1_555 U C1 NAG . C NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale17 E C PHE 4 E PHE 612 1_555 E N NH2 5 E NH2 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale18 F C PHE 4 F PHE 612 1_555 F N NH2 5 F NH2 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 235 n n 
C1 O1 NAG sing 236 n n 
C1 O5 NAG sing 237 n n 
C1 H1 NAG sing 238 n n 
C2 C3 NAG sing 239 n n 
C2 N2 NAG sing 240 n n 
C2 H2 NAG sing 241 n n 
C3 C4 NAG sing 242 n n 
C3 O3 NAG sing 243 n n 
C3 H3 NAG sing 244 n n 
C4 C5 NAG sing 245 n n 
C4 O4 NAG sing 246 n n 
C4 H4 NAG sing 247 n n 
C5 C6 NAG sing 248 n n 
C5 O5 NAG sing 249 n n 
C5 H5 NAG sing 250 n n 
C6 O6 NAG sing 251 n n 
C6 H61 NAG sing 252 n n 
C6 H62 NAG sing 253 n n 
C7 C8 NAG sing 254 n n 
C7 N2 NAG sing 255 n n 
C7 O7 NAG doub 256 n n 
C8 H81 NAG sing 257 n n 
C8 H82 NAG sing 258 n n 
C8 H83 NAG sing 259 n n 
N2 HN2 NAG sing 260 n n 
O1 HO1 NAG sing 261 n n 
O3 HO3 NAG sing 262 n n 
O4 HO4 NAG sing 263 n n 
O6 HO6 NAG sing 264 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8ONA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 NAG A 1 601 601 NAG NAG . 
H 3 NAG A 1 602 603 NAG NAG . 
I 3 NAG A 1 603 605 NAG NAG . 
J 3 NAG A 1 604 606 NAG NAG . 
K 3 NAG A 1 605 607 NAG NAG . 
L 3 NAG B 1 601 601 NAG NAG . 
M 3 NAG B 1 602 603 NAG NAG . 
N 3 NAG B 1 603 605 NAG NAG . 
O 3 NAG B 1 604 606 NAG NAG . 
P 3 NAG B 1 605 607 NAG NAG . 
Q 3 NAG C 1 601 601 NAG NAG . 
R 3 NAG C 1 602 603 NAG NAG . 
S 3 NAG C 1 603 605 NAG NAG . 
T 3 NAG C 1 604 606 NAG NAG . 
U 3 NAG C 1 605 607 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . P 3 98.949 106.614 162.585 1 145.19 ? C1 NAG 605 B 1 
HETATM 2 C C2 NAG . . . P 3 99.066 106.306 164.081 1 146.01 ? C2 NAG 605 B 1 
HETATM 3 C C3 NAG . . . P 3 100.523 106.394 164.53 1 145.46 ? C3 NAG 605 B 1 
HETATM 4 C C4 NAG . . . P 3 101.407 105.519 163.652 1 148.13 ? C4 NAG 605 B 1 
HETATM 5 C C5 NAG . . . P 3 101.205 105.883 162.187 1 146.82 ? C5 NAG 605 B 1 
HETATM 6 C C6 NAG . . . P 3 101.962 104.98 161.241 1 142.89 ? C6 NAG 605 B 1 
HETATM 7 C C7 NAG . . . P 3 97.091 106.842 165.445 1 137.77 ? C7 NAG 605 B 1 
HETATM 8 C C8 NAG . . . P 3 96.379 107.905 166.225 1 130.67 ? C8 NAG 605 B 1 
HETATM 9 N N2 NAG . . . P 3 98.239 107.209 164.867 1 141.68 ? N2 NAG 605 B 1 
HETATM 10 O O3 NAG . . . P 3 100.626 105.982 165.888 1 140.53 ? O3 NAG 605 B 1 
HETATM 11 O O4 NAG . . . P 3 102.775 105.705 163.998 1 141.94 ? O4 NAG 605 B 1 
HETATM 12 O O5 NAG . . . P 3 99.818 105.755 161.848 1 149.98 ? O5 NAG 605 B 1 
HETATM 13 O O6 NAG . . . P 3 101.74 105.347 159.887 1 139.21 ? O6 NAG 605 B 1 
HETATM 14 O O7 NAG . . . P 3 96.647 105.703 165.342 1 137.9 ? O7 NAG 605 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           241 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#