data_8ONN # _model_server_result.job_id l5EamMYMhLXnxkESIepZzA _model_server_result.datetime_utc '2024-12-01 15:47:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8onn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 8ONN # _exptl.entry_id 8ONN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 334.219 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]oxypropanoic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.03 _cell.angle_gamma 90 _cell.entry_id 8ONN _cell.length_a 141.102 _cell.length_b 51.335 _cell.length_c 205.289 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ONN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,J,K 1 1 C,D,H,I,L,M 2 1 E,N 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -70.31397 0 192.871769 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C11 H15 N2 O8 P' _chem_comp.formula_weight 334.219 _chem_comp.id OCF _chem_comp.mon_nstd_flag n _chem_comp.name '3-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]oxypropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "PYRIDOXAMINE-5'-PHOSPHATE linked to 3-aminooxypropionic acid" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1P P OCF doub 237 n n O3P P OCF sing 238 n n P O2P OCF sing 239 n n P O4P OCF sing 240 n n O4P C5A OCF sing 241 n n C5A C5 OCF sing 242 n n OG CB OCF sing 243 n n OG N OCF sing 244 n n C5 C6 OCF doub 245 n y C5 C4 OCF sing 246 n y C4A C4 OCF sing 247 n n C4A N OCF doub 248 e n CB CA OCF sing 249 n n C6 N1 OCF sing 250 n y C4 C3 OCF doub 251 n y N1 C2 OCF doub 252 n y C3 C2 OCF sing 253 n y C3 O3 OCF sing 254 n n CA C OCF sing 255 n n C2 C2A OCF sing 256 n n O C OCF doub 257 n n C OXT OCF sing 258 n n C2A H2A1 OCF sing 259 n n C2A H2A2 OCF sing 260 n n C2A H2A3 OCF sing 261 n n O3 HO3 OCF sing 262 n n C6 H6 OCF sing 263 n n C5A H5A1 OCF sing 264 n n C5A H5A2 OCF sing 265 n n O2P HOP2 OCF sing 266 n n O3P HOP3 OCF sing 267 n n CB HB1 OCF sing 268 n n CB HB2 OCF sing 269 n n CA HA1 OCF sing 270 n n CA HA2 OCF sing 271 n n OXT HOXT OCF sing 272 n n C4A H4A OCF sing 273 n n # _atom_sites.entry_id 8ONN _atom_sites.fract_transf_matrix[1][1] 0.007087 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002583 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 OCF A 1 301 301 OCF 00E . G 2 OCF B 1 301 301 OCF 00E . H 2 OCF C 1 301 301 OCF 00E . I 2 OCF D 1 301 301 OCF 00E . J 3 HOH A 1 401 92 HOH HOH . J 3 HOH A 2 402 146 HOH HOH . J 3 HOH A 3 403 85 HOH HOH . J 3 HOH A 4 404 161 HOH HOH . J 3 HOH A 5 405 142 HOH HOH . J 3 HOH A 6 406 119 HOH HOH . J 3 HOH A 7 407 65 HOH HOH . J 3 HOH A 8 408 41 HOH HOH . J 3 HOH A 9 409 177 HOH HOH . J 3 HOH A 10 410 82 HOH HOH . J 3 HOH A 11 411 45 HOH HOH . J 3 HOH A 12 412 144 HOH HOH . J 3 HOH A 13 413 88 HOH HOH . J 3 HOH A 14 414 132 HOH HOH . J 3 HOH A 15 415 98 HOH HOH . J 3 HOH A 16 416 2 HOH HOH . J 3 HOH A 17 417 154 HOH HOH . J 3 HOH A 18 418 38 HOH HOH . J 3 HOH A 19 419 40 HOH HOH . J 3 HOH A 20 420 4 HOH HOH . J 3 HOH A 21 421 48 HOH HOH . J 3 HOH A 22 422 42 HOH HOH . J 3 HOH A 23 423 39 HOH HOH . J 3 HOH A 24 424 102 HOH HOH . J 3 HOH A 25 425 35 HOH HOH . J 3 HOH A 26 426 148 HOH HOH . J 3 HOH A 27 427 17 HOH HOH . J 3 HOH A 28 428 145 HOH HOH . J 3 HOH A 29 429 5 HOH HOH . J 3 HOH A 30 430 55 HOH HOH . J 3 HOH A 31 431 174 HOH HOH . J 3 HOH A 32 432 8 HOH HOH . J 3 HOH A 33 433 103 HOH HOH . J 3 HOH A 34 434 116 HOH HOH . J 3 HOH A 35 435 24 HOH HOH . J 3 HOH A 36 436 91 HOH HOH . J 3 HOH A 37 437 131 HOH HOH . J 3 HOH A 38 438 107 HOH HOH . J 3 HOH A 39 439 171 HOH HOH . J 3 HOH A 40 440 22 HOH HOH . J 3 HOH A 41 441 153 HOH HOH . J 3 HOH A 42 442 130 HOH HOH . J 3 HOH A 43 443 59 HOH HOH . J 3 HOH A 44 444 86 HOH HOH . J 3 HOH A 45 445 137 HOH HOH . J 3 HOH A 46 446 105 HOH HOH . J 3 HOH A 47 447 16 HOH HOH . J 3 HOH A 48 448 156 HOH HOH . J 3 HOH A 49 449 173 HOH HOH . J 3 HOH A 50 450 84 HOH HOH . J 3 HOH A 51 451 133 HOH HOH . J 3 HOH A 52 452 87 HOH HOH . J 3 HOH A 53 453 83 HOH HOH . K 3 HOH B 1 401 128 HOH HOH . K 3 HOH B 2 402 63 HOH HOH . K 3 HOH B 3 403 162 HOH HOH . K 3 HOH B 4 404 120 HOH HOH . K 3 HOH B 5 405 20 HOH HOH . K 3 HOH B 6 406 14 HOH HOH . K 3 HOH B 7 407 129 HOH HOH . K 3 HOH B 8 408 150 HOH HOH . K 3 HOH B 9 409 151 HOH HOH . K 3 HOH B 10 410 160 HOH HOH . K 3 HOH B 11 411 1 HOH HOH . L 3 HOH C 1 401 123 HOH HOH . L 3 HOH C 2 402 157 HOH HOH . L 3 HOH C 3 403 9 HOH HOH . L 3 HOH C 4 404 54 HOH HOH . L 3 HOH C 5 405 36 HOH HOH . L 3 HOH C 6 406 25 HOH HOH . L 3 HOH C 7 407 106 HOH HOH . L 3 HOH C 8 408 163 HOH HOH . L 3 HOH C 9 409 118 HOH HOH . L 3 HOH C 10 410 53 HOH HOH . L 3 HOH C 11 411 165 HOH HOH . L 3 HOH C 12 412 52 HOH HOH . L 3 HOH C 13 413 183 HOH HOH . L 3 HOH C 14 414 60 HOH HOH . L 3 HOH C 15 415 112 HOH HOH . L 3 HOH C 16 416 99 HOH HOH . L 3 HOH C 17 417 66 HOH HOH . L 3 HOH C 18 418 155 HOH HOH . L 3 HOH C 19 419 180 HOH HOH . L 3 HOH C 20 420 167 HOH HOH . L 3 HOH C 21 421 178 HOH HOH . L 3 HOH C 22 422 33 HOH HOH . L 3 HOH C 23 423 31 HOH HOH . L 3 HOH C 24 424 76 HOH HOH . L 3 HOH C 25 425 124 HOH HOH . L 3 HOH C 26 426 149 HOH HOH . L 3 HOH C 27 427 152 HOH HOH . L 3 HOH C 28 428 64 HOH HOH . L 3 HOH C 29 429 108 HOH HOH . L 3 HOH C 30 430 75 HOH HOH . L 3 HOH C 31 431 136 HOH HOH . L 3 HOH C 32 432 101 HOH HOH . L 3 HOH C 33 433 122 HOH HOH . L 3 HOH C 34 434 70 HOH HOH . L 3 HOH C 35 435 164 HOH HOH . L 3 HOH C 36 436 182 HOH HOH . L 3 HOH C 37 437 23 HOH HOH . L 3 HOH C 38 438 110 HOH HOH . L 3 HOH C 39 439 168 HOH HOH . L 3 HOH C 40 440 169 HOH HOH . L 3 HOH C 41 441 37 HOH HOH . L 3 HOH C 42 442 166 HOH HOH . L 3 HOH C 43 443 170 HOH HOH . L 3 HOH C 44 444 104 HOH HOH . M 3 HOH D 1 401 58 HOH HOH . M 3 HOH D 2 402 13 HOH HOH . M 3 HOH D 3 403 111 HOH HOH . M 3 HOH D 4 404 50 HOH HOH . M 3 HOH D 5 405 125 HOH HOH . M 3 HOH D 6 406 77 HOH HOH . M 3 HOH D 7 407 49 HOH HOH . M 3 HOH D 8 408 81 HOH HOH . M 3 HOH D 9 409 21 HOH HOH . M 3 HOH D 10 410 141 HOH HOH . M 3 HOH D 11 411 117 HOH HOH . M 3 HOH D 12 412 28 HOH HOH . M 3 HOH D 13 413 172 HOH HOH . M 3 HOH D 14 414 176 HOH HOH . M 3 HOH D 15 415 7 HOH HOH . M 3 HOH D 16 416 147 HOH HOH . M 3 HOH D 17 417 143 HOH HOH . M 3 HOH D 18 418 138 HOH HOH . M 3 HOH D 19 419 126 HOH HOH . M 3 HOH D 20 420 15 HOH HOH . N 3 HOH E 1 301 79 HOH HOH . N 3 HOH E 2 302 93 HOH HOH . N 3 HOH E 3 303 29 HOH HOH . N 3 HOH E 4 304 10 HOH HOH . N 3 HOH E 5 305 80 HOH HOH . N 3 HOH E 6 306 113 HOH HOH . N 3 HOH E 7 307 158 HOH HOH . N 3 HOH E 8 308 78 HOH HOH . N 3 HOH E 9 309 109 HOH HOH . N 3 HOH E 10 310 57 HOH HOH . N 3 HOH E 11 311 62 HOH HOH . N 3 HOH E 12 312 6 HOH HOH . N 3 HOH E 13 313 100 HOH HOH . N 3 HOH E 14 314 135 HOH HOH . N 3 HOH E 15 315 94 HOH HOH . N 3 HOH E 16 316 89 HOH HOH . N 3 HOH E 17 317 140 HOH HOH . N 3 HOH E 18 318 18 HOH HOH . N 3 HOH E 19 319 114 HOH HOH . N 3 HOH E 20 320 56 HOH HOH . N 3 HOH E 21 321 159 HOH HOH . N 3 HOH E 22 322 96 HOH HOH . N 3 HOH E 23 323 179 HOH HOH . N 3 HOH E 24 324 134 HOH HOH . N 3 HOH E 25 325 175 HOH HOH . N 3 HOH E 26 326 95 HOH HOH . N 3 HOH E 27 327 90 HOH HOH . N 3 HOH E 28 328 46 HOH HOH . N 3 HOH E 29 329 115 HOH HOH . N 3 HOH E 30 330 127 HOH HOH . N 3 HOH E 31 331 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 OCF . . . I 2 -9.788 31.87 57.6 1 33.1 ? N1 OCF 301 D 1 HETATM 2 C C2 OCF . . . I 2 -8.672 31.823 56.835 1 31.91 ? C2 OCF 301 D 1 HETATM 3 C C2A OCF . . . I 2 -7.708 30.669 57.008 1 32.94 ? C2A OCF 301 D 1 HETATM 4 C C3 OCF . . . I 2 -8.511 32.822 55.833 1 32.2 ? C3 OCF 301 D 1 HETATM 5 O O3 OCF . . . I 2 -7.46 32.8 55.063 1 32.56 ? O3 OCF 301 D 1 HETATM 6 C C4 OCF . . . I 2 -9.472 33.876 55.671 1 32.12 ? C4 OCF 301 D 1 HETATM 7 C C4A OCF . . . I 2 -9.225 34.978 54.738 1 32.73 ? C4A OCF 301 D 1 HETATM 8 N N OCF . . . I 2 -8.964 34.817 53.506 1 34.5 ? N OCF 301 D 1 HETATM 9 C C5 OCF . . . I 2 -10.591 33.904 56.528 1 30.54 ? C5 OCF 301 D 1 HETATM 10 C C6 OCF . . . I 2 -10.714 32.867 57.43 1 30.94 ? C6 OCF 301 D 1 HETATM 11 C C5A OCF . . . I 2 -11.665 34.986 56.425 1 31.01 ? C5A OCF 301 D 1 HETATM 12 O O4P OCF . . . I 2 -11.205 36.392 56.526 1 29.9 ? O4P OCF 301 D 1 HETATM 13 P P OCF . . . I 2 -12.128 37.615 55.972 1 29.53 ? P OCF 301 D 1 HETATM 14 O O2P OCF . . . I 2 -13.515 37.298 56.464 1 30.39 -1 O2P OCF 301 D 1 HETATM 15 O O3P OCF . . . I 2 -11.396 38.835 56.52 1 29.28 ? O3P OCF 301 D 1 HETATM 16 O O1P OCF . . . I 2 -12.07 37.611 54.412 1 29.45 -1 O1P OCF 301 D 1 HETATM 17 O OG OCF . . . I 2 -8.995 35.991 52.74 0 0.5 ? OG OCF 301 D 1 HETATM 18 C CB OCF . . . I 2 -9.257 35.689 51.344 0 0.5 ? CB OCF 301 D 1 HETATM 19 C CA OCF . . . I 2 -10.646 36.274 50.796 0 0.5 ? CA OCF 301 D 1 HETATM 20 C C OCF . . . I 2 -11.636 35.273 50.177 0 0.5 ? C OCF 301 D 1 HETATM 21 O OXT OCF . . . I 2 -12.756 35.419 50.372 0 0.5 ? OXT OCF 301 D 1 HETATM 22 O O OCF . . . I 2 -11.264 34.311 49.483 0 0.5 -1 O OCF 301 D 1 # _model_server_stats.io_time_ms 138 _model_server_stats.parse_time_ms 51 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 1100 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 22 #