data_8OO5 # _model_server_result.job_id wIQi_FCa7kSPzYIvJ_itBA _model_server_result.datetime_utc '2024-10-10 08:21:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oo5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1405}' # _entry.id 8OO5 # _exptl.entry_id 8OO5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8OO5 _cell.length_a 81.577 _cell.length_b 81.577 _cell.length_c 234.132 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OO5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8OO5 _atom_sites.fract_transf_matrix[1][1] 0.012258 _atom_sites.fract_transf_matrix[1][2] 0.007077 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004271 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VUF P 1 1401 1401 VUF LI1 . C 2 VUF P 1 1402 1402 VUF LI1 . D 3 EDO P 1 1403 1403 EDO EDO . E 3 EDO P 1 1404 1404 EDO EDO . F 3 EDO P 1 1405 1405 EDO EDO . G 3 EDO P 1 1406 1406 EDO EDO . H 4 HOH P 1 1501 35 HOH HOH . H 4 HOH P 2 1502 56 HOH HOH . H 4 HOH P 3 1503 78 HOH HOH . H 4 HOH P 4 1504 50 HOH HOH . H 4 HOH P 5 1505 1 HOH HOH . H 4 HOH P 6 1506 48 HOH HOH . H 4 HOH P 7 1507 3 HOH HOH . H 4 HOH P 8 1508 15 HOH HOH . H 4 HOH P 9 1509 18 HOH HOH . H 4 HOH P 10 1510 69 HOH HOH . H 4 HOH P 11 1511 77 HOH HOH . H 4 HOH P 12 1512 7 HOH HOH . H 4 HOH P 13 1513 19 HOH HOH . H 4 HOH P 14 1514 13 HOH HOH . H 4 HOH P 15 1515 73 HOH HOH . H 4 HOH P 16 1516 83 HOH HOH . H 4 HOH P 17 1517 59 HOH HOH . H 4 HOH P 18 1518 16 HOH HOH . H 4 HOH P 19 1519 33 HOH HOH . H 4 HOH P 20 1520 70 HOH HOH . H 4 HOH P 21 1521 37 HOH HOH . H 4 HOH P 22 1522 64 HOH HOH . H 4 HOH P 23 1523 76 HOH HOH . H 4 HOH P 24 1524 63 HOH HOH . H 4 HOH P 25 1525 82 HOH HOH . H 4 HOH P 26 1526 32 HOH HOH . H 4 HOH P 27 1527 39 HOH HOH . H 4 HOH P 28 1528 53 HOH HOH . H 4 HOH P 29 1529 85 HOH HOH . H 4 HOH P 30 1530 29 HOH HOH . H 4 HOH P 31 1531 21 HOH HOH . H 4 HOH P 32 1532 20 HOH HOH . H 4 HOH P 33 1533 23 HOH HOH . H 4 HOH P 34 1534 47 HOH HOH . H 4 HOH P 35 1535 36 HOH HOH . H 4 HOH P 36 1536 6 HOH HOH . H 4 HOH P 37 1537 60 HOH HOH . H 4 HOH P 38 1538 8 HOH HOH . H 4 HOH P 39 1539 52 HOH HOH . H 4 HOH P 40 1540 25 HOH HOH . H 4 HOH P 41 1541 22 HOH HOH . H 4 HOH P 42 1542 26 HOH HOH . H 4 HOH P 43 1543 24 HOH HOH . H 4 HOH P 44 1544 28 HOH HOH . H 4 HOH P 45 1545 12 HOH HOH . H 4 HOH P 46 1546 17 HOH HOH . H 4 HOH P 47 1547 34 HOH HOH . H 4 HOH P 48 1548 44 HOH HOH . H 4 HOH P 49 1549 41 HOH HOH . H 4 HOH P 50 1550 49 HOH HOH . H 4 HOH P 51 1551 5 HOH HOH . H 4 HOH P 52 1552 74 HOH HOH . H 4 HOH P 53 1553 62 HOH HOH . H 4 HOH P 54 1554 65 HOH HOH . H 4 HOH P 55 1555 84 HOH HOH . H 4 HOH P 56 1556 38 HOH HOH . H 4 HOH P 57 1557 61 HOH HOH . H 4 HOH P 58 1558 46 HOH HOH . H 4 HOH P 59 1559 75 HOH HOH . H 4 HOH P 60 1560 30 HOH HOH . H 4 HOH P 61 1561 11 HOH HOH . H 4 HOH P 62 1562 71 HOH HOH . H 4 HOH P 63 1563 4 HOH HOH . H 4 HOH P 64 1564 45 HOH HOH . H 4 HOH P 65 1565 14 HOH HOH . H 4 HOH P 66 1566 57 HOH HOH . H 4 HOH P 67 1567 54 HOH HOH . H 4 HOH P 68 1568 2 HOH HOH . H 4 HOH P 69 1569 58 HOH HOH . H 4 HOH P 70 1570 42 HOH HOH . H 4 HOH P 71 1571 40 HOH HOH . H 4 HOH P 72 1572 68 HOH HOH . H 4 HOH P 73 1573 10 HOH HOH . H 4 HOH P 74 1574 51 HOH HOH . H 4 HOH P 75 1575 67 HOH HOH . H 4 HOH P 76 1576 79 HOH HOH . H 4 HOH P 77 1577 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 -20.152 -22.414 -2.995 1 68.65 ? C1 EDO 1405 P 1 HETATM 2 O O1 EDO . . . F 3 -18.965 -22.567 -2.3 1 72.34 ? O1 EDO 1405 P 1 HETATM 3 C C2 EDO . . . F 3 -19.908 -21.966 -4.387 1 76.1 ? C2 EDO 1405 P 1 HETATM 4 O O2 EDO . . . F 3 -20.743 -22.545 -5.42 1 74.71 ? O2 EDO 1405 P 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #