data_8OOG # _model_server_result.job_id SlYsJ3lavgxnO31wdA66gA _model_server_result.datetime_utc '2025-01-10 16:47:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 8OOG # _exptl.entry_id 8OOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OOG _cell.length_a 67.88 _cell.length_b 94.22 _cell.length_c 116.96 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 8OOG _atom_sites.fract_transf_matrix[1][1] 0.014732 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 401 401 SAM SAM . C 3 VUO A 1 402 501 VUO INH . D 4 DMS A 1 403 601 DMS DMS . E 4 DMS A 1 404 701 DMS DMS . F 5 HOH A 1 501 171 HOH HOH . F 5 HOH A 2 502 154 HOH HOH . F 5 HOH A 3 503 82 HOH HOH . F 5 HOH A 4 504 167 HOH HOH . F 5 HOH A 5 505 61 HOH HOH . F 5 HOH A 6 506 133 HOH HOH . F 5 HOH A 7 507 119 HOH HOH . F 5 HOH A 8 508 79 HOH HOH . F 5 HOH A 9 509 149 HOH HOH . F 5 HOH A 10 510 138 HOH HOH . F 5 HOH A 11 511 101 HOH HOH . F 5 HOH A 12 512 52 HOH HOH . F 5 HOH A 13 513 176 HOH HOH . F 5 HOH A 14 514 131 HOH HOH . F 5 HOH A 15 515 139 HOH HOH . F 5 HOH A 16 516 127 HOH HOH . F 5 HOH A 17 517 15 HOH HOH . F 5 HOH A 18 518 106 HOH HOH . F 5 HOH A 19 519 51 HOH HOH . F 5 HOH A 20 520 57 HOH HOH . F 5 HOH A 21 521 95 HOH HOH . F 5 HOH A 22 522 145 HOH HOH . F 5 HOH A 23 523 19 HOH HOH . F 5 HOH A 24 524 143 HOH HOH . F 5 HOH A 25 525 135 HOH HOH . F 5 HOH A 26 526 124 HOH HOH . F 5 HOH A 27 527 50 HOH HOH . F 5 HOH A 28 528 76 HOH HOH . F 5 HOH A 29 529 6 HOH HOH . F 5 HOH A 30 530 103 HOH HOH . F 5 HOH A 31 531 10 HOH HOH . F 5 HOH A 32 532 9 HOH HOH . F 5 HOH A 33 533 88 HOH HOH . F 5 HOH A 34 534 120 HOH HOH . F 5 HOH A 35 535 117 HOH HOH . F 5 HOH A 36 536 107 HOH HOH . F 5 HOH A 37 537 30 HOH HOH . F 5 HOH A 38 538 56 HOH HOH . F 5 HOH A 39 539 150 HOH HOH . F 5 HOH A 40 540 27 HOH HOH . F 5 HOH A 41 541 26 HOH HOH . F 5 HOH A 42 542 72 HOH HOH . F 5 HOH A 43 543 37 HOH HOH . F 5 HOH A 44 544 60 HOH HOH . F 5 HOH A 45 545 59 HOH HOH . F 5 HOH A 46 546 4 HOH HOH . F 5 HOH A 47 547 126 HOH HOH . F 5 HOH A 48 548 92 HOH HOH . F 5 HOH A 49 549 144 HOH HOH . F 5 HOH A 50 550 45 HOH HOH . F 5 HOH A 51 551 39 HOH HOH . F 5 HOH A 52 552 11 HOH HOH . F 5 HOH A 53 553 47 HOH HOH . F 5 HOH A 54 554 44 HOH HOH . F 5 HOH A 55 555 55 HOH HOH . F 5 HOH A 56 556 121 HOH HOH . F 5 HOH A 57 557 105 HOH HOH . F 5 HOH A 58 558 73 HOH HOH . F 5 HOH A 59 559 54 HOH HOH . F 5 HOH A 60 560 132 HOH HOH . F 5 HOH A 61 561 85 HOH HOH . F 5 HOH A 62 562 137 HOH HOH . F 5 HOH A 63 563 25 HOH HOH . F 5 HOH A 64 564 21 HOH HOH . F 5 HOH A 65 565 113 HOH HOH . F 5 HOH A 66 566 146 HOH HOH . F 5 HOH A 67 567 29 HOH HOH . F 5 HOH A 68 568 43 HOH HOH . F 5 HOH A 69 569 159 HOH HOH . F 5 HOH A 70 570 122 HOH HOH . F 5 HOH A 71 571 78 HOH HOH . F 5 HOH A 72 572 147 HOH HOH . F 5 HOH A 73 573 115 HOH HOH . F 5 HOH A 74 574 148 HOH HOH . F 5 HOH A 75 575 172 HOH HOH . F 5 HOH A 76 576 81 HOH HOH . F 5 HOH A 77 577 28 HOH HOH . F 5 HOH A 78 578 64 HOH HOH . F 5 HOH A 79 579 112 HOH HOH . F 5 HOH A 80 580 162 HOH HOH . F 5 HOH A 81 581 35 HOH HOH . F 5 HOH A 82 582 141 HOH HOH . F 5 HOH A 83 583 102 HOH HOH . F 5 HOH A 84 584 110 HOH HOH . F 5 HOH A 85 585 17 HOH HOH . F 5 HOH A 86 586 34 HOH HOH . F 5 HOH A 87 587 8 HOH HOH . F 5 HOH A 88 588 2 HOH HOH . F 5 HOH A 89 589 123 HOH HOH . F 5 HOH A 90 590 16 HOH HOH . F 5 HOH A 91 591 7 HOH HOH . F 5 HOH A 92 592 65 HOH HOH . F 5 HOH A 93 593 77 HOH HOH . F 5 HOH A 94 594 58 HOH HOH . F 5 HOH A 95 595 13 HOH HOH . F 5 HOH A 96 596 84 HOH HOH . F 5 HOH A 97 597 42 HOH HOH . F 5 HOH A 98 598 71 HOH HOH . F 5 HOH A 99 599 155 HOH HOH . F 5 HOH A 100 600 83 HOH HOH . F 5 HOH A 101 601 20 HOH HOH . F 5 HOH A 102 602 70 HOH HOH . F 5 HOH A 103 603 33 HOH HOH . F 5 HOH A 104 604 86 HOH HOH . F 5 HOH A 105 605 142 HOH HOH . F 5 HOH A 106 606 46 HOH HOH . F 5 HOH A 107 607 87 HOH HOH . F 5 HOH A 108 608 128 HOH HOH . F 5 HOH A 109 609 66 HOH HOH . F 5 HOH A 110 610 31 HOH HOH . F 5 HOH A 111 611 174 HOH HOH . F 5 HOH A 112 612 151 HOH HOH . F 5 HOH A 113 613 93 HOH HOH . F 5 HOH A 114 614 97 HOH HOH . F 5 HOH A 115 615 96 HOH HOH . F 5 HOH A 116 616 67 HOH HOH . F 5 HOH A 117 617 14 HOH HOH . F 5 HOH A 118 618 40 HOH HOH . F 5 HOH A 119 619 38 HOH HOH . F 5 HOH A 120 620 41 HOH HOH . F 5 HOH A 121 621 5 HOH HOH . F 5 HOH A 122 622 24 HOH HOH . F 5 HOH A 123 623 118 HOH HOH . F 5 HOH A 124 624 129 HOH HOH . F 5 HOH A 125 625 62 HOH HOH . F 5 HOH A 126 626 108 HOH HOH . F 5 HOH A 127 627 48 HOH HOH . F 5 HOH A 128 628 80 HOH HOH . F 5 HOH A 129 629 69 HOH HOH . F 5 HOH A 130 630 36 HOH HOH . F 5 HOH A 131 631 136 HOH HOH . F 5 HOH A 132 632 18 HOH HOH . F 5 HOH A 133 633 169 HOH HOH . F 5 HOH A 134 634 22 HOH HOH . F 5 HOH A 135 635 158 HOH HOH . F 5 HOH A 136 636 116 HOH HOH . F 5 HOH A 137 637 32 HOH HOH . F 5 HOH A 138 638 100 HOH HOH . F 5 HOH A 139 639 63 HOH HOH . F 5 HOH A 140 640 90 HOH HOH . F 5 HOH A 141 641 75 HOH HOH . F 5 HOH A 142 642 161 HOH HOH . F 5 HOH A 143 643 89 HOH HOH . F 5 HOH A 144 644 109 HOH HOH . F 5 HOH A 145 645 134 HOH HOH . F 5 HOH A 146 646 98 HOH HOH . F 5 HOH A 147 647 68 HOH HOH . F 5 HOH A 148 648 111 HOH HOH . F 5 HOH A 149 649 53 HOH HOH . F 5 HOH A 150 650 74 HOH HOH . F 5 HOH A 151 651 114 HOH HOH . F 5 HOH A 152 652 170 HOH HOH . F 5 HOH A 153 653 23 HOH HOH . F 5 HOH A 154 654 173 HOH HOH . F 5 HOH A 155 655 49 HOH HOH . F 5 HOH A 156 656 99 HOH HOH . F 5 HOH A 157 657 175 HOH HOH . F 5 HOH A 158 658 160 HOH HOH . F 5 HOH A 159 659 12 HOH HOH . F 5 HOH A 160 660 157 HOH HOH . F 5 HOH A 161 661 1 HOH HOH . F 5 HOH A 162 662 153 HOH HOH . F 5 HOH A 163 663 140 HOH HOH . F 5 HOH A 164 664 3 HOH HOH . F 5 HOH A 165 665 166 HOH HOH . F 5 HOH A 166 666 125 HOH HOH . F 5 HOH A 167 667 156 HOH HOH . F 5 HOH A 168 668 168 HOH HOH . F 5 HOH A 169 669 104 HOH HOH . F 5 HOH A 170 670 94 HOH HOH . F 5 HOH A 171 671 164 HOH HOH . F 5 HOH A 172 672 165 HOH HOH . F 5 HOH A 173 673 91 HOH HOH . F 5 HOH A 174 674 152 HOH HOH . F 5 HOH A 175 675 163 HOH HOH . F 5 HOH A 176 676 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 4 27.228 47.407 27.639 1 24.89 ? S DMS 404 A 1 HETATM 2 O O DMS . . . E 4 27.227 48.788 27.18 1 22.12 ? O DMS 404 A 1 HETATM 3 C C1 DMS . . . E 4 25.545 47.163 27.948 1 24.12 ? C1 DMS 404 A 1 HETATM 4 C C2 DMS . . . E 4 27.32 46.286 26.31 1 22.25 ? C2 DMS 404 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #