data_8OOM # _model_server_result.job_id 8LDv1uA9AeN0SG_wHLRkWg _model_server_result.datetime_utc '2024-12-03 04:29:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oom # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8OOM # _exptl.entry_id 8OOM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.368 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2,4-dihydroxy-3,3-dimethyl-N-{3-oxo-3-[(2-sulfanylethyl)amino]propyl}butanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OOM _cell.length_a 72.874 _cell.length_b 96.184 _cell.length_c 86.754 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OOM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 79 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 73 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SAG _struct_conn.ptnr2_label_comp_id PNY _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PNY _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.026 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H22 N2 O4 S' _chem_comp.formula_weight 278.368 _chem_comp.id PNY _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2,4-dihydroxy-3,3-dimethyl-N-{3-oxo-3-[(2-sulfanylethyl)amino]propyl}butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms pantetheine;(R)-2,4-Dihydroxy-N-(3-((2-mercaptoethyl)amino)-3-oxopropyl)-3,3-dimethylbutanamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA OAE PNY sing 266 n n CAA CAF PNY sing 267 n n CAB CAF PNY sing 268 n n OAC CAO PNY doub 269 n n OAD CAP PNY doub 270 n n CAF CAI PNY sing 271 n n CAF CAQ PNY sing 272 n n SAG CAH PNY sing 273 n n CAH CAJ PNY sing 274 n n CAJ NAM PNY sing 275 n n CAK CAL PNY sing 276 n n CAK NAN PNY sing 277 n n CAL CAO PNY sing 278 n n NAM CAO PNY sing 279 n n NAN CAP PNY sing 280 n n CAP CAQ PNY sing 281 n n CAQ OAR PNY sing 282 n n CAA HAA PNY sing 283 n n CAA HAAA PNY sing 284 n n CAB HAB PNY sing 285 n n CAB HABA PNY sing 286 n n CAB HABB PNY sing 287 n n OAE HOAE PNY sing 288 n n SAG HSAG PNY sing 289 n n CAH HAH PNY sing 290 n n CAH HAHA PNY sing 291 n n CAI HAI PNY sing 292 n n CAI HAIA PNY sing 293 n n CAI HAIB PNY sing 294 n n CAJ HAJ PNY sing 295 n n CAJ HAJA PNY sing 296 n n CAK HAK PNY sing 297 n n CAK HAKA PNY sing 298 n n CAL HAL PNY sing 299 n n CAL HALA PNY sing 300 n n NAM HNAM PNY sing 301 n n NAN HNAN PNY sing 302 n n CAQ HAQ PNY sing 303 n n OAR HOAR PNY sing 304 n n # _atom_sites.entry_id 8OOM _atom_sites.fract_transf_matrix[1][1] 0.013722 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PNY A 1 301 1 PNY PAT . C 3 ACT A 1 302 2 ACT ACT . D 3 ACT A 1 303 3 ACT ACT . E 3 ACT A 1 304 4 ACT ACT . F 4 HOH A 1 401 62 HOH HOH . F 4 HOH A 2 402 69 HOH HOH . F 4 HOH A 3 403 66 HOH HOH . F 4 HOH A 4 404 63 HOH HOH . F 4 HOH A 5 405 89 HOH HOH . F 4 HOH A 6 406 58 HOH HOH . F 4 HOH A 7 407 44 HOH HOH . F 4 HOH A 8 408 59 HOH HOH . F 4 HOH A 9 409 2 HOH HOH . F 4 HOH A 10 410 53 HOH HOH . F 4 HOH A 11 411 25 HOH HOH . F 4 HOH A 12 412 18 HOH HOH . F 4 HOH A 13 413 56 HOH HOH . F 4 HOH A 14 414 45 HOH HOH . F 4 HOH A 15 415 78 HOH HOH . F 4 HOH A 16 416 84 HOH HOH . F 4 HOH A 17 417 47 HOH HOH . F 4 HOH A 18 418 77 HOH HOH . F 4 HOH A 19 419 21 HOH HOH . F 4 HOH A 20 420 5 HOH HOH . F 4 HOH A 21 421 46 HOH HOH . F 4 HOH A 22 422 68 HOH HOH . F 4 HOH A 23 423 14 HOH HOH . F 4 HOH A 24 424 38 HOH HOH . F 4 HOH A 25 425 52 HOH HOH . F 4 HOH A 26 426 12 HOH HOH . F 4 HOH A 27 427 26 HOH HOH . F 4 HOH A 28 428 24 HOH HOH . F 4 HOH A 29 429 7 HOH HOH . F 4 HOH A 30 430 76 HOH HOH . F 4 HOH A 31 431 57 HOH HOH . F 4 HOH A 32 432 64 HOH HOH . F 4 HOH A 33 433 22 HOH HOH . F 4 HOH A 34 434 3 HOH HOH . F 4 HOH A 35 435 80 HOH HOH . F 4 HOH A 36 436 4 HOH HOH . F 4 HOH A 37 437 11 HOH HOH . F 4 HOH A 38 438 60 HOH HOH . F 4 HOH A 39 439 9 HOH HOH . F 4 HOH A 40 440 1 HOH HOH . F 4 HOH A 41 441 6 HOH HOH . F 4 HOH A 42 442 27 HOH HOH . F 4 HOH A 43 443 50 HOH HOH . F 4 HOH A 44 444 20 HOH HOH . F 4 HOH A 45 445 31 HOH HOH . F 4 HOH A 46 446 37 HOH HOH . F 4 HOH A 47 447 39 HOH HOH . F 4 HOH A 48 448 55 HOH HOH . F 4 HOH A 49 449 13 HOH HOH . F 4 HOH A 50 450 17 HOH HOH . F 4 HOH A 51 451 40 HOH HOH . F 4 HOH A 52 452 74 HOH HOH . F 4 HOH A 53 453 29 HOH HOH . F 4 HOH A 54 454 67 HOH HOH . F 4 HOH A 55 455 51 HOH HOH . F 4 HOH A 56 456 61 HOH HOH . F 4 HOH A 57 457 19 HOH HOH . F 4 HOH A 58 458 75 HOH HOH . F 4 HOH A 59 459 28 HOH HOH . F 4 HOH A 60 460 70 HOH HOH . F 4 HOH A 61 461 23 HOH HOH . F 4 HOH A 62 462 48 HOH HOH . F 4 HOH A 63 463 8 HOH HOH . F 4 HOH A 64 464 65 HOH HOH . F 4 HOH A 65 465 36 HOH HOH . F 4 HOH A 66 466 34 HOH HOH . F 4 HOH A 67 467 10 HOH HOH . F 4 HOH A 68 468 35 HOH HOH . F 4 HOH A 69 469 33 HOH HOH . F 4 HOH A 70 470 83 HOH HOH . F 4 HOH A 71 471 15 HOH HOH . F 4 HOH A 72 472 49 HOH HOH . F 4 HOH A 73 473 90 HOH HOH . F 4 HOH A 74 474 32 HOH HOH . F 4 HOH A 75 475 71 HOH HOH . F 4 HOH A 76 476 88 HOH HOH . F 4 HOH A 77 477 16 HOH HOH . F 4 HOH A 78 478 73 HOH HOH . F 4 HOH A 79 479 43 HOH HOH . F 4 HOH A 80 480 30 HOH HOH . F 4 HOH A 81 481 41 HOH HOH . F 4 HOH A 82 482 42 HOH HOH . F 4 HOH A 83 483 54 HOH HOH . F 4 HOH A 84 484 79 HOH HOH . F 4 HOH A 85 485 86 HOH HOH . F 4 HOH A 86 486 87 HOH HOH . F 4 HOH A 87 487 81 HOH HOH . F 4 HOH A 88 488 82 HOH HOH . F 4 HOH A 89 489 72 HOH HOH . F 4 HOH A 90 490 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA PNY . . . B 2 -27.904 16.742 24.038 1 58.96 ? CAA PNY 301 A 1 HETATM 2 C CAB PNY . . . B 2 -29.712 15.08 23.55 1 52.8 ? CAB PNY 301 A 1 HETATM 3 O OAC PNY . . . B 2 -21.096 13.643 24.612 1 61.57 ? OAC PNY 301 A 1 HETATM 4 O OAD PNY . . . B 2 -25.754 15.461 25.418 1 44.77 ? OAD PNY 301 A 1 HETATM 5 O OAE PNY . . . B 2 -27.933 16.707 25.447 1 54.25 ? OAE PNY 301 A 1 HETATM 6 C CAF PNY . . . B 2 -28.204 15.335 23.509 1 60.69 ? CAF PNY 301 A 1 HETATM 7 S SAG PNY . . . B 2 -17.23 12.414 27.173 1 40.69 ? SAG PNY 301 A 1 HETATM 8 C CAH PNY . . . B 2 -19.022 12.377 27.449 1 46.04 ? CAH PNY 301 A 1 HETATM 9 C CAI PNY . . . B 2 -27.683 15.216 22.079 1 58.6 ? CAI PNY 301 A 1 HETATM 10 C CAJ PNY . . . B 2 -19.63 11.961 26.13 1 51.46 ? CAJ PNY 301 A 1 HETATM 11 C CAK PNY . . . B 2 -23.715 13.957 24.172 1 55.71 ? CAK PNY 301 A 1 HETATM 12 C CAL PNY . . . B 2 -23.233 13.121 25.363 1 48.53 ? CAL PNY 301 A 1 HETATM 13 N NAM PNY . . . B 2 -21.073 12.053 26.238 1 53.01 ? NAM PNY 301 A 1 HETATM 14 N NAN PNY . . . B 2 -25.124 13.753 23.987 1 41.35 ? NAN PNY 301 A 1 HETATM 15 C CAO PNY . . . B 2 -21.729 12.978 25.365 1 47.53 ? CAO PNY 301 A 1 HETATM 16 C CAP PNY . . . B 2 -26.092 14.584 24.676 1 53.73 ? CAP PNY 301 A 1 HETATM 17 C CAQ PNY . . . B 2 -27.566 14.279 24.42 1 50.53 ? CAQ PNY 301 A 1 HETATM 18 O OAR PNY . . . B 2 -27.667 12.979 23.851 1 42.62 ? OAR PNY 301 A 1 HETATM 19 H HAA PNY . . . B 2 -27.027 17.023 23.736 1 70.71 ? HAA PNY 301 A 1 HETATM 20 H HAAA PNY . . . B 2 -28.576 17.362 23.714 1 70.71 ? HAAA PNY 301 A 1 HETATM 21 H HAB PNY . . . B 2 -30.034 15.193 24.458 1 63.33 ? HAB PNY 301 A 1 HETATM 22 H HABA PNY . . . B 2 -30.162 15.709 22.966 1 63.33 ? HABA PNY 301 A 1 HETATM 23 H HABB PNY . . . B 2 -29.895 14.175 23.253 1 63.33 ? HABB PNY 301 A 1 HETATM 24 H HOAE PNY . . . B 2 -28.592 17.172 25.725 1 65.06 ? HOAE PNY 301 A 1 HETATM 25 H HSAG PNY . . . B 2 -16.992 13.073 26.199 1 48.79 ? HSAG PNY 301 A 1 HETATM 26 H HAH PNY . . . B 2 -19.244 11.736 28.142 1 55.22 ? HAH PNY 301 A 1 HETATM 27 H HAHA PNY . . . B 2 -19.343 13.255 27.708 1 55.22 ? HAHA PNY 301 A 1 HETATM 28 H HAI PNY . . . B 2 -26.963 15.852 21.944 1 70.29 ? HAI PNY 301 A 1 HETATM 29 H HAIA PNY . . . B 2 -27.351 14.317 21.929 1 70.29 ? HAIA PNY 301 A 1 HETATM 30 H HAIB PNY . . . B 2 -28.402 15.404 21.456 1 70.29 ? HAIB PNY 301 A 1 HETATM 31 H HAJ PNY . . . B 2 -19.374 11.048 25.925 1 61.72 ? HAJ PNY 301 A 1 HETATM 32 H HAJA PNY . . . B 2 -19.316 12.548 25.425 1 61.72 ? HAJA PNY 301 A 1 HETATM 33 H HAK PNY . . . B 2 -23.543 14.896 24.344 1 66.81 ? HAK PNY 301 A 1 HETATM 34 H HAKA PNY . . . B 2 -23.24 13.685 23.371 1 66.81 ? HAKA PNY 301 A 1 HETATM 35 H HAL PNY . . . B 2 -23.639 12.241 25.324 1 58.2 ? HAL PNY 301 A 1 HETATM 36 H HALA PNY . . . B 2 -23.517 13.543 26.189 1 58.2 ? HALA PNY 301 A 1 HETATM 37 H HNAM PNY . . . B 2 -21.514 11.574 26.8 1 63.58 ? HNAM PNY 301 A 1 HETATM 38 H HNAN PNY . . . B 2 -25.397 13.13 23.461 1 49.59 ? HNAN PNY 301 A 1 HETATM 39 H HAQ PNY . . . B 2 -28.052 14.305 25.26 1 60.6 ? HAQ PNY 301 A 1 HETATM 40 H HOAR PNY . . . B 2 -27.153 12.895 23.184 1 51.11 ? HOAR PNY 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 40 #