data_8OOQ
#
_model_server_result.job_id            uDchHuqJZb_lUYtg91--uw 
_model_server_result.datetime_utc      '2025-06-25 21:42:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ooq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EA","auth_seq_id":501}' 
#
_entry.id    8OOQ 
#
_exptl.entry_id    8OOQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         89.95 
_cell.angle_beta          89.86 
_cell.angle_gamma         60.05 
_cell.entry_id            8OOQ 
_cell.length_a            131.808 
_cell.length_b            131.927 
_cell.length_c            203.544 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OOQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dodecameric 12 author_and_software_defined_assembly 1 
PISA dodecameric 12 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 1 1 
M,N,O,P,Q,R,S,T,U,V,W,X,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 AA N N 
? 4 DA N N 
? 4 EA N N 
? 4 FA N N 
? 4 HA N N 
? 4 KA N N 
? 4 MA N N 
? 4 OA N N 
? 4 PA N N 
? 4 RA N N 
? 4 UA N N 
? 4 VA N N 
? 4 AB N N 
? 4 DB N N 
? 4 GB N N 
? 4 KB N N 
? 4 NB N N 
? 4 QB N N 
? 4 TB N N 
? 4 XB N N 
? 4 AC N N 
? 4 EC N N 
? 4 JC N N 
? 4 NC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OXT ILE 448 A ILE 448 1_555 Z MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? 
metalc ? metalc2 B OE2 GLU 139 B GLU 139 1_555 CA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? 
metalc ? metalc3 B OE2 GLU 194 B GLU 194 1_555 CA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc4 B OE1 GLU 201 B GLU 201 1_555 CA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc5 J OE2 GLU 139 J GLU 139 1_555 QA MG MG . J MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? 
metalc ? metalc6 J OE2 GLU 194 J GLU 194 1_555 QA MG MG . J MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? 
metalc ? metalc7 J OE1 GLU 201 J GLU 201 1_555 QA MG MG . J MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
metalc ? metalc8 M OE2 GLU 139 P GLU 139 1_555 ZA MG MG . P MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc9 M OE1 GLU 201 P GLU 201 1_555 ZA MG MG . P MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc10 N OE2 GLU 194 Q GLU 194 1_555 BB MG MG . Q MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? 
metalc ? metalc11 P OE1 GLU 137 T GLU 137 1_555 JB MG MG . T MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? 
metalc ? metalc12 P OE2 GLU 139 T GLU 139 1_555 IB MG MG . T MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc13 W OE2 GLU 139 b GLU 139 1_555 IC MG MG . b MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc14 W OE2 GLU 194 b GLU 194 1_555 IC MG MG . b MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? 
metalc ? metalc15 W OE1 GLU 201 b GLU 201 1_555 IC MG MG . b MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? 
metalc ? metalc16 W OD2 ASP 203 b ASP 203 1_555 HC MG MG . b MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 1 n n 
C1 O2 AKG sing 2 n n 
C1 C2 AKG sing 3 n n 
O2 HO2 AKG sing 4 n n 
C2 O5 AKG doub 5 n n 
C2 C3 AKG sing 6 n n 
C3 C4 AKG sing 7 n n 
C3 H31 AKG sing 8 n n 
C3 H32 AKG sing 9 n n 
C4 C5 AKG sing 10 n n 
C4 H41 AKG sing 11 n n 
C4 H42 AKG sing 12 n n 
C5 O3 AKG doub 13 n n 
C5 O4 AKG sing 14 n n 
O4 HO4 AKG sing 15 n n 
#
_atom_sites.entry_id                     8OOQ 
_atom_sites.fract_transf_matrix[1][1]    0.007587 
_atom_sites.fract_transf_matrix[1][2]    -0.004371 
_atom_sites.fract_transf_matrix[1][3]    -0.00002 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008748 
_atom_sites.fract_transf_matrix[2][3]    0.000004 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004913 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Y 2 EDO A 1 501 501 EDO PEG . 
Z 3 MG A 1 502 13 MG MG . 
AA 4 AKG A 1 503 32 AKG AKG . 
BA 3 MG B 1 501 3 MG MG . 
CA 3 MG B 1 502 16 MG MG . 
DA 4 AKG B 1 503 19 AKG AKG . 
EA 4 AKG C 1 501 24 AKG AKG . 
FA 4 AKG D 1 501 13 AKG AKG . 
GA 2 EDO E 1 501 501 EDO PEG . 
HA 4 AKG E 1 502 9 AKG AKG . 
IA 2 EDO F 1 501 501 EDO PEG . 
JA 3 MG F 1 502 4 MG MG . 
KA 4 AKG F 1 503 4 AKG AKG . 
LA 2 EDO G 1 501 501 EDO PEG . 
MA 4 AKG G 1 502 11 AKG AKG . 
NA 3 MG H 1 501 2 MG MG . 
OA 4 AKG H 1 502 16 AKG AKG . 
PA 4 AKG I 1 501 6 AKG AKG . 
QA 3 MG J 1 501 14 MG MG . 
RA 4 AKG J 1 502 1 AKG AKG . 
SA 2 EDO K 1 501 501 EDO PEG . 
TA 3 MG K 1 502 1 MG MG . 
UA 4 AKG K 1 503 21 AKG AKG . 
VA 4 AKG L 1 501 29 AKG AKG . 
WA 2 EDO P 1 501 501 EDO PEG . 
XA 5 PEG P 1 502 601 PEG PEG . 
YA 2 EDO P 1 503 701 EDO PEG . 
ZA 3 MG P 1 504 11 MG MG . 
AB 4 AKG P 1 505 32 AKG AKG . 
BB 3 MG Q 1 501 7 MG MG . 
CB 3 MG Q 1 502 15 MG MG . 
DB 4 AKG Q 1 503 19 AKG AKG . 
EB 2 EDO S 1 601 601 EDO PEG . 
FB 3 MG S 1 602 12 MG MG . 
GB 4 AKG S 1 603 24 AKG AKG . 
HB 3 MG T 1 501 8 MG MG . 
IB 3 MG T 1 502 9 MG MG . 
JB 3 MG T 1 503 10 MG MG . 
KB 4 AKG T 1 504 13 AKG AKG . 
LB 2 EDO U 1 501 501 EDO PEG . 
MB 2 EDO U 1 502 601 EDO PEG . 
NB 4 AKG U 1 503 9 AKG AKG . 
OB 2 EDO V 1 501 501 EDO PEG . 
PB 2 EDO V 1 502 601 EDO PEG . 
QB 4 AKG V 1 503 4 AKG AKG . 
RB 2 EDO X 1 601 601 EDO PEG . 
SB 2 EDO X 1 602 701 EDO PEG . 
TB 4 AKG X 1 603 11 AKG AKG . 
UB 2 EDO Y 1 601 601 EDO PEG . 
VB 2 EDO Y 1 602 501 EDO PEG . 
WB 3 MG Y 1 603 6 MG MG . 
XB 4 AKG Y 1 604 16 AKG AKG . 
YB 2 EDO Z 1 501 501 EDO PEG . 
ZB 5 PEG Z 1 502 601 PEG PEG . 
AC 4 AKG Z 1 503 6 AKG AKG . 
BC 2 EDO a 1 501 501 EDO PEG . 
CC 2 EDO a 1 502 501 EDO PEG . 
DC 2 EDO a 1 503 601 EDO PEG . 
EC 4 AKG a 1 504 1 AKG AKG . 
FC 2 EDO b 1 501 501 EDO PEG . 
GC 2 EDO b 1 502 601 EDO PEG . 
HC 3 MG b 1 503 5 MG MG . 
IC 3 MG b 1 504 17 MG MG . 
JC 4 AKG b 1 505 21 AKG AKG . 
KC 2 EDO c 1 501 501 EDO PEG . 
LC 2 EDO c 1 502 501 EDO PEG . 
MC 2 EDO c 1 503 601 EDO PEG . 
NC 4 AKG c 1 504 29 AKG AKG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . . . EA 4 -14.165 24.989 -32.878 1 61.23 ? C1 AKG 501 C 1 
HETATM 2 O O1 AKG . . . EA 4 -14.077 23.834 -33.35 1 52.89 ? O1 AKG 501 C 1 
HETATM 3 O O2 AKG . . . EA 4 -13.167 25.584 -32.423 1 40.93 ? O2 AKG 501 C 1 
HETATM 4 C C2 AKG . . . EA 4 -15.462 25.664 -32.87 1 68.6 ? C2 AKG 501 C 1 
HETATM 5 O O5 AKG . . . EA 4 -15.518 26.883 -32.94 1 48.07 ? O5 AKG 501 C 1 
HETATM 6 C C3 AKG . . . EA 4 -16.72 24.824 -32.786 1 66.81 ? C3 AKG 501 C 1 
HETATM 7 C C4 AKG . . . EA 4 -17.909 25.588 -32.203 1 49.99 ? C4 AKG 501 C 1 
HETATM 8 C C5 AKG . . . EA 4 -17.707 25.994 -30.757 1 60.76 ? C5 AKG 501 C 1 
HETATM 9 O O3 AKG . . . EA 4 -18.573 26.721 -30.232 1 60.52 ? O3 AKG 501 C 1 
HETATM 10 O O4 AKG . . . EA 4 -16.716 25.594 -30.112 1 73.5 ? O4 AKG 501 C 1 
#
_model_server_stats.io_time_ms              153 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    114 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#