data_8OOQ # _model_server_result.job_id kWBWpT5MuKf0s7fUcBUjKg _model_server_result.datetime_utc '2025-06-25 18:16:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ooq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EB","auth_seq_id":601}' # _entry.id 8OOQ # _exptl.entry_id 8OOQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 25 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.95 _cell.angle_beta 89.86 _cell.angle_gamma 60.05 _cell.entry_id 8OOQ _cell.length_a 131.808 _cell.length_b 131.927 _cell.length_c 203.544 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OOQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dodecameric 12 author_and_software_defined_assembly 1 PISA dodecameric 12 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 1 1 M,N,O,P,Q,R,S,T,U,V,W,X,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 Y N N ? 2 GA N N ? 2 IA N N ? 2 LA N N ? 2 SA N N ? 2 WA N N ? 2 YA N N ? 2 EB N N ? 2 LB N N ? 2 MB N N ? 2 OB N N ? 2 PB N N ? 2 RB N N ? 2 SB N N ? 2 UB N N ? 2 VB N N ? 2 YB N N ? 2 BC N N ? 2 CC N N ? 2 DC N N ? 2 FC N N ? 2 GC N N ? 2 KC N N ? 2 LC N N ? 2 MC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OXT ILE 448 A ILE 448 1_555 Z MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc2 B OE2 GLU 139 B GLU 139 1_555 CA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc3 B OE2 GLU 194 B GLU 194 1_555 CA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc4 B OE1 GLU 201 B GLU 201 1_555 CA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc5 J OE2 GLU 139 J GLU 139 1_555 QA MG MG . J MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc6 J OE2 GLU 194 J GLU 194 1_555 QA MG MG . J MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc7 J OE1 GLU 201 J GLU 201 1_555 QA MG MG . J MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc8 M OE2 GLU 139 P GLU 139 1_555 ZA MG MG . P MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc9 M OE1 GLU 201 P GLU 201 1_555 ZA MG MG . P MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc10 N OE2 GLU 194 Q GLU 194 1_555 BB MG MG . Q MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc11 P OE1 GLU 137 T GLU 137 1_555 JB MG MG . T MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc12 P OE2 GLU 139 T GLU 139 1_555 IB MG MG . T MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc13 W OE2 GLU 139 b GLU 139 1_555 IC MG MG . b MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc14 W OE2 GLU 194 b GLU 194 1_555 IC MG MG . b MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc15 W OE1 GLU 201 b GLU 201 1_555 IC MG MG . b MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc16 W OD2 ASP 203 b ASP 203 1_555 HC MG MG . b MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 98 n n C1 C2 EDO sing 99 n n C1 H11 EDO sing 100 n n C1 H12 EDO sing 101 n n O1 HO1 EDO sing 102 n n C2 O2 EDO sing 103 n n C2 H21 EDO sing 104 n n C2 H22 EDO sing 105 n n O2 HO2 EDO sing 106 n n # _atom_sites.entry_id 8OOQ _atom_sites.fract_transf_matrix[1][1] 0.007587 _atom_sites.fract_transf_matrix[1][2] -0.004371 _atom_sites.fract_transf_matrix[1][3] -0.00002 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008748 _atom_sites.fract_transf_matrix[2][3] 0.000004 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Y 2 EDO A 1 501 501 EDO PEG . Z 3 MG A 1 502 13 MG MG . AA 4 AKG A 1 503 32 AKG AKG . BA 3 MG B 1 501 3 MG MG . CA 3 MG B 1 502 16 MG MG . DA 4 AKG B 1 503 19 AKG AKG . EA 4 AKG C 1 501 24 AKG AKG . FA 4 AKG D 1 501 13 AKG AKG . GA 2 EDO E 1 501 501 EDO PEG . HA 4 AKG E 1 502 9 AKG AKG . IA 2 EDO F 1 501 501 EDO PEG . JA 3 MG F 1 502 4 MG MG . KA 4 AKG F 1 503 4 AKG AKG . LA 2 EDO G 1 501 501 EDO PEG . MA 4 AKG G 1 502 11 AKG AKG . NA 3 MG H 1 501 2 MG MG . OA 4 AKG H 1 502 16 AKG AKG . PA 4 AKG I 1 501 6 AKG AKG . QA 3 MG J 1 501 14 MG MG . RA 4 AKG J 1 502 1 AKG AKG . SA 2 EDO K 1 501 501 EDO PEG . TA 3 MG K 1 502 1 MG MG . UA 4 AKG K 1 503 21 AKG AKG . VA 4 AKG L 1 501 29 AKG AKG . WA 2 EDO P 1 501 501 EDO PEG . XA 5 PEG P 1 502 601 PEG PEG . YA 2 EDO P 1 503 701 EDO PEG . ZA 3 MG P 1 504 11 MG MG . AB 4 AKG P 1 505 32 AKG AKG . BB 3 MG Q 1 501 7 MG MG . CB 3 MG Q 1 502 15 MG MG . DB 4 AKG Q 1 503 19 AKG AKG . EB 2 EDO S 1 601 601 EDO PEG . FB 3 MG S 1 602 12 MG MG . GB 4 AKG S 1 603 24 AKG AKG . HB 3 MG T 1 501 8 MG MG . IB 3 MG T 1 502 9 MG MG . JB 3 MG T 1 503 10 MG MG . KB 4 AKG T 1 504 13 AKG AKG . LB 2 EDO U 1 501 501 EDO PEG . MB 2 EDO U 1 502 601 EDO PEG . NB 4 AKG U 1 503 9 AKG AKG . OB 2 EDO V 1 501 501 EDO PEG . PB 2 EDO V 1 502 601 EDO PEG . QB 4 AKG V 1 503 4 AKG AKG . RB 2 EDO X 1 601 601 EDO PEG . SB 2 EDO X 1 602 701 EDO PEG . TB 4 AKG X 1 603 11 AKG AKG . UB 2 EDO Y 1 601 601 EDO PEG . VB 2 EDO Y 1 602 501 EDO PEG . WB 3 MG Y 1 603 6 MG MG . XB 4 AKG Y 1 604 16 AKG AKG . YB 2 EDO Z 1 501 501 EDO PEG . ZB 5 PEG Z 1 502 601 PEG PEG . AC 4 AKG Z 1 503 6 AKG AKG . BC 2 EDO a 1 501 501 EDO PEG . CC 2 EDO a 1 502 501 EDO PEG . DC 2 EDO a 1 503 601 EDO PEG . EC 4 AKG a 1 504 1 AKG AKG . FC 2 EDO b 1 501 501 EDO PEG . GC 2 EDO b 1 502 601 EDO PEG . HC 3 MG b 1 503 5 MG MG . IC 3 MG b 1 504 17 MG MG . JC 4 AKG b 1 505 21 AKG AKG . KC 2 EDO c 1 501 501 EDO PEG . LC 2 EDO c 1 502 501 EDO PEG . MC 2 EDO c 1 503 601 EDO PEG . NC 4 AKG c 1 504 29 AKG AKG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . EB 2 31.489 -45.524 117.136 1 30.22 ? C1 EDO 601 S 1 HETATM 2 O O1 EDO . . . EB 2 31.576 -46.32 115.973 1 37.14 ? O1 EDO 601 S 1 HETATM 3 C C2 EDO . . . EB 2 30.634 -44.316 116.934 1 28.25 ? C2 EDO 601 S 1 HETATM 4 O O2 EDO . . . EB 2 30.791 -43.828 115.607 1 37.72 ? O2 EDO 601 S 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 112 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #