data_8OOR # _model_server_result.job_id PcO1_bxaCq9_ZHg86N4kCw _model_server_result.datetime_utc '2024-10-19 07:32:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oor # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":501}' # _entry.id 8OOR # _exptl.entry_id 8OOR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OOR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OOR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 L N N ? 7 M N N ? 7 N N N ? 7 O N N ? 7 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 J OD2 ASP 190 J ASP 190 1_555 R MG MG . J MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc2 Q O1G ATP . J ATP 801 1_555 R MG MG . J MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc3 Q O1B ATP . J ATP 801 1_555 R MG MG . J MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc4 Q O3B ATP . J ATP 801 1_555 R MG MG . J MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 8OOR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 7 ADP A 1 501 501 ADP ADP . L 7 ADP B 1 501 501 ADP ADP . M 7 ADP C 1 501 501 ADP ADP . N 7 ADP D 1 501 501 ADP ADP . O 7 ADP E 1 501 501 ADP ADP . P 7 ADP F 1 501 501 ADP ADP . Q 8 ATP J 1 801 801 ATP ATP . R 9 MG J 1 802 802 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . L 7 116.91 123.233 101.579 1 42.94 ? PB ADP 501 B 1 HETATM 2 O O1B ADP . . . L 7 116.775 122.293 100.431 1 44.85 ? O1B ADP 501 B 1 HETATM 3 O O2B ADP . . . L 7 116.368 124.594 101.299 1 46.41 ? O2B ADP 501 B 1 HETATM 4 O O3B ADP . . . L 7 118.237 123.3 102.251 1 42.96 ? O3B ADP 501 B 1 HETATM 5 P PA ADP . . . L 7 116.196 121.656 103.907 1 43.56 ? PA ADP 501 B 1 HETATM 6 O O1A ADP . . . L 7 117.014 120.477 103.531 1 43.88 ? O1A ADP 501 B 1 HETATM 7 O O2A ADP . . . L 7 116.699 122.53 105.006 1 43.98 ? O2A ADP 501 B 1 HETATM 8 O O3A ADP . . . L 7 115.899 122.572 102.629 1 47.12 ? O3A ADP 501 B 1 HETATM 9 O O5' ADP . . . L 7 114.731 121.06 104.19 1 49.82 ? O5' ADP 501 B 1 HETATM 10 C C5' ADP . . . L 7 113.77 121.656 105.053 1 34.26 ? C5' ADP 501 B 1 HETATM 11 C C4' ADP . . . L 7 113.453 120.87 106.327 1 35.78 ? C4' ADP 501 B 1 HETATM 12 O O4' ADP . . . L 7 112.752 119.665 106.038 1 42.6 ? O4' ADP 501 B 1 HETATM 13 C C3' ADP . . . L 7 114.655 120.434 107.119 1 38.63 ? C3' ADP 501 B 1 HETATM 14 O O3' ADP . . . L 7 114.268 120.372 108.484 1 45.35 ? O3' ADP 501 B 1 HETATM 15 C C2' ADP . . . L 7 114.927 119.036 106.649 1 39.04 ? C2' ADP 501 B 1 HETATM 16 O O2' ADP . . . L 7 115.476 118.298 107.725 1 45.97 ? O2' ADP 501 B 1 HETATM 17 C C1' ADP . . . L 7 113.543 118.514 106.344 1 31.22 ? C1' ADP 501 B 1 HETATM 18 N N9 ADP . . . L 7 113.439 117.571 105.214 1 35.65 ? N9 ADP 501 B 1 HETATM 19 C C8 ADP . . . L 7 113.679 117.886 103.946 1 38.59 ? C8 ADP 501 B 1 HETATM 20 N N7 ADP . . . L 7 113.454 116.839 103.141 1 42.76 ? N7 ADP 501 B 1 HETATM 21 C C5 ADP . . . L 7 113.05 115.825 103.895 1 35.46 ? C5 ADP 501 B 1 HETATM 22 C C6 ADP . . . L 7 112.639 114.442 103.656 1 38.95 ? C6 ADP 501 B 1 HETATM 23 N N6 ADP . . . L 7 112.633 113.935 102.41 1 37.52 ? N6 ADP 501 B 1 HETATM 24 N N1 ADP . . . L 7 112.285 113.711 104.721 1 40.2 ? N1 ADP 501 B 1 HETATM 25 C C2 ADP . . . L 7 112.295 114.214 105.952 1 30.93 ? C2 ADP 501 B 1 HETATM 26 N N3 ADP . . . L 7 112.649 115.467 106.23 1 37.12 ? N3 ADP 501 B 1 HETATM 27 C C4 ADP . . . L 7 113.024 116.315 105.261 1 36.88 ? C4 ADP 501 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 61 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 27 #