data_8OOZ # _model_server_result.job_id '_K-nUQ2BTYocb-2MzoIdeQ' _model_server_result.datetime_utc '2025-01-03 03:22:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ooz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PA","auth_seq_id":501}' # _entry.id 8OOZ # _exptl.entry_id 8OOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.89 _cell.angle_gamma 90 _cell.entry_id 8OOZ _cell.length_a 131.548 _cell.length_b 197.399 _cell.length_c 135.171 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 Q N N ? 2 T N N ? 2 Z N N ? 2 CA N N ? 2 FA N N ? 2 IA N N ? 2 NA N N ? 2 PA N N ? 2 RA N N ? 2 VA N N ? 2 YA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 131 A GLU 131 1_555 P MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc2 A OE2 GLU 331 A GLU 331 1_555 P MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc3 B OE1 GLU 131 B GLU 131 1_555 S MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc4 B OE2 GLU 331 B GLU 331 1_555 S MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc5 C OE1 GLU 131 C GLU 131 1_555 Y MG MG . C MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc6 C OE2 GLU 133 C GLU 133 1_555 X MG MG . C MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc7 C OE2 GLU 187 C GLU 187 1_555 X MG MG . C MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc8 C OE1 GLU 194 C GLU 194 1_555 X MG MG . C MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc9 C OE2 GLU 331 C GLU 331 1_555 Y MG MG . C MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc10 D OE2 GLU 133 D GLU 133 1_555 BA MG MG . D MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc11 D OE2 GLU 187 D GLU 187 1_555 BA MG MG . D MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc12 E OE1 GLU 131 E GLU 131 1_555 EA MG MG . E MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc13 E OE2 GLU 331 E GLU 331 1_555 EA MG MG . E MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc14 F OE1 GLU 131 F GLU 131 1_555 HA MG MG . F MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc15 F OE1 GLU 194 F GLU 194 1_555 GA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc16 F OE2 GLU 331 F GLU 331 1_555 HA MG MG . F MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc17 G OE1 GLU 131 G GLU 131 1_555 MA MG MG . G MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc18 G OE2 GLU 331 G GLU 331 1_555 MA MG MG . G MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc19 H OE1 GLU 131 H GLU 131 1_555 OA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc20 H OE2 GLU 331 H GLU 331 1_555 OA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc21 I OE1 GLU 131 I GLU 131 1_555 QA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc22 I OE2 GLU 331 I GLU 331 1_555 QA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc23 J OE1 GLU 131 J GLU 131 1_555 UA MG MG . J MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? metalc ? metalc24 J OE2 GLU 331 J GLU 331 1_555 UA MG MG . J MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc25 K OE1 GLU 131 K GLU 131 1_555 XA MG MG . K MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc26 K OE2 GLU 331 K GLU 331 1_555 XA MG MG . K MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc27 L OE1 GLU 131 L GLU 131 1_555 ZA MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc28 L OE2 GLU 331 L GLU 331 1_555 ZA MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8OOZ _atom_sites.fract_transf_matrix[1][1] 0.007602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00065 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 ATP A 1 501 501 ATP ATP . N 3 FMT A 1 502 502 FMT FMT . O 3 FMT A 1 503 503 FMT FMT . P 4 MG A 1 504 6 MG MG . Q 2 ATP B 1 501 501 ATP ATP . R 3 FMT B 1 502 502 FMT FMT . S 4 MG B 1 503 5 MG MG . T 2 ATP C 1 501 501 ATP ATP . U 3 FMT C 1 502 502 FMT FMT . V 3 FMT C 1 503 503 FMT FMT . W 3 FMT C 1 504 504 FMT FMT . X 4 MG C 1 505 2 MG MG . Y 4 MG C 1 506 9 MG MG . Z 2 ATP D 1 501 501 ATP ATP . AA 3 FMT D 1 502 502 FMT FMT . BA 4 MG D 1 503 7 MG MG . CA 2 ATP E 1 501 501 ATP ATP . DA 3 FMT E 1 502 502 FMT FMT . EA 4 MG E 1 503 10 MG MG . FA 2 ATP F 1 501 501 ATP ATP . GA 4 MG F 1 502 4 MG MG . HA 4 MG F 1 503 11 MG MG . IA 2 ATP G 1 501 501 ATP ATP . JA 3 FMT G 1 502 502 FMT FMT . KA 5 GOL G 1 503 503 GOL GOL . LA 3 FMT G 1 504 504 FMT FMT . MA 4 MG G 1 505 3 MG MG . NA 2 ATP H 1 501 501 ATP ATP . OA 4 MG H 1 502 12 MG MG . PA 2 ATP I 1 501 501 ATP ATP . QA 4 MG I 1 502 13 MG MG . RA 2 ATP J 1 501 501 ATP ATP . SA 3 FMT J 1 502 502 FMT FMT . TA 3 FMT J 1 503 503 FMT FMT . UA 4 MG J 1 504 14 MG MG . VA 2 ATP K 1 501 501 ATP ATP . WA 3 FMT K 1 502 502 FMT FMT . XA 4 MG K 1 503 15 MG MG . YA 2 ATP L 1 501 501 ATP ATP . ZA 4 MG L 1 502 8 MG MG . AB 6 HOH A 1 601 27 HOH HOH . AB 6 HOH A 2 602 36 HOH HOH . AB 6 HOH A 3 603 14 HOH HOH . AB 6 HOH A 4 604 15 HOH HOH . BB 6 HOH B 1 601 21 HOH HOH . BB 6 HOH B 2 602 22 HOH HOH . BB 6 HOH B 3 603 20 HOH HOH . CB 6 HOH C 1 601 30 HOH HOH . CB 6 HOH C 2 602 2 HOH HOH . CB 6 HOH C 3 603 5 HOH HOH . DB 6 HOH D 1 601 29 HOH HOH . DB 6 HOH D 2 602 32 HOH HOH . DB 6 HOH D 3 603 12 HOH HOH . DB 6 HOH D 4 604 33 HOH HOH . DB 6 HOH D 5 605 11 HOH HOH . DB 6 HOH D 6 606 8 HOH HOH . DB 6 HOH D 7 607 24 HOH HOH . EB 6 HOH E 1 601 13 HOH HOH . EB 6 HOH E 2 602 31 HOH HOH . EB 6 HOH E 3 603 23 HOH HOH . EB 6 HOH E 4 604 4 HOH HOH . FB 6 HOH F 1 601 35 HOH HOH . GB 6 HOH G 1 601 28 HOH HOH . HB 6 HOH H 1 601 16 HOH HOH . HB 6 HOH H 2 602 10 HOH HOH . IB 6 HOH J 1 601 19 HOH HOH . IB 6 HOH J 2 602 26 HOH HOH . JB 6 HOH L 1 601 37 HOH HOH . JB 6 HOH L 2 602 17 HOH HOH . JB 6 HOH L 3 603 18 HOH HOH . JB 6 HOH L 4 604 25 HOH HOH . JB 6 HOH L 5 605 34 HOH HOH . JB 6 HOH L 6 606 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . PA 2 -9.104 -41.774 30.282 1 149.29 ? PG ATP 501 I 1 HETATM 2 O O1G ATP . . . PA 2 -9.819 -42.767 31.162 1 126.13 ? O1G ATP 501 I 1 HETATM 3 O O2G ATP . . . PA 2 -8.123 -40.969 31.099 1 119.27 ? O2G ATP 501 I 1 HETATM 4 O O3G ATP . . . PA 2 -8.394 -42.499 29.165 1 129.95 ? O3G ATP 501 I 1 HETATM 5 P PB ATP . . . PA 2 -11.463 -41.377 28.867 1 145.61 ? PB ATP 501 I 1 HETATM 6 O O1B ATP . . . PA 2 -11 -42.089 27.621 1 121.5 ? O1B ATP 501 I 1 HETATM 7 O O2B ATP . . . PA 2 -12.198 -42.327 29.781 1 119.53 ? O2B ATP 501 I 1 HETATM 8 O O3B ATP . . . PA 2 -10.187 -40.778 29.637 1 136.2 ? O3B ATP 501 I 1 HETATM 9 P PA ATP . . . PA 2 -11.835 -38.709 28.204 1 134.64 ? PA ATP 501 I 1 HETATM 10 O O1A ATP . . . PA 2 -12.889 -37.833 27.571 1 101.07 ? O1A ATP 501 I 1 HETATM 11 O O2A ATP . . . PA 2 -10.633 -38.834 27.3 1 111.37 ? O2A ATP 501 I 1 HETATM 12 O O3A ATP . . . PA 2 -12.445 -40.173 28.457 1 133.83 ? O3A ATP 501 I 1 HETATM 13 O O5' ATP . . . PA 2 -11.372 -38.068 29.605 1 118.98 ? O5' ATP 501 I 1 HETATM 14 C C5' ATP . . . PA 2 -10.594 -36.875 29.624 1 95.24 ? C5' ATP 501 I 1 HETATM 15 C C4' ATP . . . PA 2 -10.041 -36.64 31.024 1 86.4 ? C4' ATP 501 I 1 HETATM 16 O O4' ATP . . . PA 2 -11.093 -36.757 31.984 1 86.79 ? O4' ATP 501 I 1 HETATM 17 C C3' ATP . . . PA 2 -8.981 -37.67 31.372 1 92.81 ? C3' ATP 501 I 1 HETATM 18 O O3' ATP . . . PA 2 -7.723 -37.031 31.597 1 89.58 ? O3' ATP 501 I 1 HETATM 19 C C2' ATP . . . PA 2 -9.462 -38.368 32.624 1 95.44 ? C2' ATP 501 I 1 HETATM 20 O O2' ATP . . . PA 2 -8.488 -38.289 33.665 1 100.37 ? O2' ATP 501 I 1 HETATM 21 C C1' ATP . . . PA 2 -10.734 -37.653 33.037 1 94.34 ? C1' ATP 501 I 1 HETATM 22 N N9 ATP . . . PA 2 -11.806 -38.651 33.255 1 92.01 ? N9 ATP 501 I 1 HETATM 23 C C8 ATP . . . PA 2 -12.365 -39.428 32.319 1 94.06 ? C8 ATP 501 I 1 HETATM 24 N N7 ATP . . . PA 2 -13.302 -40.212 32.896 1 84.97 ? N7 ATP 501 I 1 HETATM 25 C C5 ATP . . . PA 2 -13.319 -39.915 34.209 1 79.52 ? C5 ATP 501 I 1 HETATM 26 C C6 ATP . . . PA 2 -14.096 -40.402 35.372 1 78.31 ? C6 ATP 501 I 1 HETATM 27 N N6 ATP . . . PA 2 -15.038 -41.363 35.228 1 81.27 ? N6 ATP 501 I 1 HETATM 28 N N1 ATP . . . PA 2 -13.836 -39.859 36.578 1 74.67 ? N1 ATP 501 I 1 HETATM 29 C C2 ATP . . . PA 2 -12.904 -38.906 36.716 1 76.68 ? C2 ATP 501 I 1 HETATM 30 N N3 ATP . . . PA 2 -12.186 -38.447 35.682 1 75.29 ? N3 ATP 501 I 1 HETATM 31 C C4 ATP . . . PA 2 -12.371 -38.928 34.43 1 80.87 ? C4 ATP 501 I 1 # _model_server_stats.io_time_ms 86 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #