data_8OOZ # _model_server_result.job_id aVv1v9hNy_2fLH-Ou19X2A _model_server_result.datetime_utc '2025-01-03 03:38:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ooz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":503}' # _entry.id 8OOZ # _exptl.entry_id 8OOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.89 _cell.angle_gamma 90 _cell.entry_id 8OOZ _cell.length_a 131.548 _cell.length_b 197.399 _cell.length_c 135.171 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 P N N ? 4 S N N ? 4 X N N ? 4 Y N N ? 4 BA N N ? 4 EA N N ? 4 GA N N ? 4 HA N N ? 4 MA N N ? 4 OA N N ? 4 QA N N ? 4 UA N N ? 4 XA N N ? 4 ZA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 131 A GLU 131 1_555 P MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc2 A OE2 GLU 331 A GLU 331 1_555 P MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc3 B OE1 GLU 131 B GLU 131 1_555 S MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc4 B OE2 GLU 331 B GLU 331 1_555 S MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc5 C OE1 GLU 131 C GLU 131 1_555 Y MG MG . C MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc6 C OE2 GLU 133 C GLU 133 1_555 X MG MG . C MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc7 C OE2 GLU 187 C GLU 187 1_555 X MG MG . C MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc8 C OE1 GLU 194 C GLU 194 1_555 X MG MG . C MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc9 C OE2 GLU 331 C GLU 331 1_555 Y MG MG . C MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc10 D OE2 GLU 133 D GLU 133 1_555 BA MG MG . D MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc11 D OE2 GLU 187 D GLU 187 1_555 BA MG MG . D MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc12 E OE1 GLU 131 E GLU 131 1_555 EA MG MG . E MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc13 E OE2 GLU 331 E GLU 331 1_555 EA MG MG . E MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc14 F OE1 GLU 131 F GLU 131 1_555 HA MG MG . F MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc15 F OE1 GLU 194 F GLU 194 1_555 GA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc16 F OE2 GLU 331 F GLU 331 1_555 HA MG MG . F MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc17 G OE1 GLU 131 G GLU 131 1_555 MA MG MG . G MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc18 G OE2 GLU 331 G GLU 331 1_555 MA MG MG . G MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc19 H OE1 GLU 131 H GLU 131 1_555 OA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc20 H OE2 GLU 331 H GLU 331 1_555 OA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc21 I OE1 GLU 131 I GLU 131 1_555 QA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc22 I OE2 GLU 331 I GLU 331 1_555 QA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc23 J OE1 GLU 131 J GLU 131 1_555 UA MG MG . J MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? metalc ? metalc24 J OE2 GLU 331 J GLU 331 1_555 UA MG MG . J MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc25 K OE1 GLU 131 K GLU 131 1_555 XA MG MG . K MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc26 K OE2 GLU 331 K GLU 331 1_555 XA MG MG . K MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc27 L OE1 GLU 131 L GLU 131 1_555 ZA MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc28 L OE2 GLU 331 L GLU 331 1_555 ZA MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8OOZ _atom_sites.fract_transf_matrix[1][1] 0.007602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00065 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 ATP A 1 501 501 ATP ATP . N 3 FMT A 1 502 502 FMT FMT . O 3 FMT A 1 503 503 FMT FMT . P 4 MG A 1 504 6 MG MG . Q 2 ATP B 1 501 501 ATP ATP . R 3 FMT B 1 502 502 FMT FMT . S 4 MG B 1 503 5 MG MG . T 2 ATP C 1 501 501 ATP ATP . U 3 FMT C 1 502 502 FMT FMT . V 3 FMT C 1 503 503 FMT FMT . W 3 FMT C 1 504 504 FMT FMT . X 4 MG C 1 505 2 MG MG . Y 4 MG C 1 506 9 MG MG . Z 2 ATP D 1 501 501 ATP ATP . AA 3 FMT D 1 502 502 FMT FMT . BA 4 MG D 1 503 7 MG MG . CA 2 ATP E 1 501 501 ATP ATP . DA 3 FMT E 1 502 502 FMT FMT . EA 4 MG E 1 503 10 MG MG . FA 2 ATP F 1 501 501 ATP ATP . GA 4 MG F 1 502 4 MG MG . HA 4 MG F 1 503 11 MG MG . IA 2 ATP G 1 501 501 ATP ATP . JA 3 FMT G 1 502 502 FMT FMT . KA 5 GOL G 1 503 503 GOL GOL . LA 3 FMT G 1 504 504 FMT FMT . MA 4 MG G 1 505 3 MG MG . NA 2 ATP H 1 501 501 ATP ATP . OA 4 MG H 1 502 12 MG MG . PA 2 ATP I 1 501 501 ATP ATP . QA 4 MG I 1 502 13 MG MG . RA 2 ATP J 1 501 501 ATP ATP . SA 3 FMT J 1 502 502 FMT FMT . TA 3 FMT J 1 503 503 FMT FMT . UA 4 MG J 1 504 14 MG MG . VA 2 ATP K 1 501 501 ATP ATP . WA 3 FMT K 1 502 502 FMT FMT . XA 4 MG K 1 503 15 MG MG . YA 2 ATP L 1 501 501 ATP ATP . ZA 4 MG L 1 502 8 MG MG . AB 6 HOH A 1 601 27 HOH HOH . AB 6 HOH A 2 602 36 HOH HOH . AB 6 HOH A 3 603 14 HOH HOH . AB 6 HOH A 4 604 15 HOH HOH . BB 6 HOH B 1 601 21 HOH HOH . BB 6 HOH B 2 602 22 HOH HOH . BB 6 HOH B 3 603 20 HOH HOH . CB 6 HOH C 1 601 30 HOH HOH . CB 6 HOH C 2 602 2 HOH HOH . CB 6 HOH C 3 603 5 HOH HOH . DB 6 HOH D 1 601 29 HOH HOH . DB 6 HOH D 2 602 32 HOH HOH . DB 6 HOH D 3 603 12 HOH HOH . DB 6 HOH D 4 604 33 HOH HOH . DB 6 HOH D 5 605 11 HOH HOH . DB 6 HOH D 6 606 8 HOH HOH . DB 6 HOH D 7 607 24 HOH HOH . EB 6 HOH E 1 601 13 HOH HOH . EB 6 HOH E 2 602 31 HOH HOH . EB 6 HOH E 3 603 23 HOH HOH . EB 6 HOH E 4 604 4 HOH HOH . FB 6 HOH F 1 601 35 HOH HOH . GB 6 HOH G 1 601 28 HOH HOH . HB 6 HOH H 1 601 16 HOH HOH . HB 6 HOH H 2 602 10 HOH HOH . IB 6 HOH J 1 601 19 HOH HOH . IB 6 HOH J 2 602 26 HOH HOH . JB 6 HOH L 1 601 37 HOH HOH . JB 6 HOH L 2 602 17 HOH HOH . JB 6 HOH L 3 603 18 HOH HOH . JB 6 HOH L 4 604 25 HOH HOH . JB 6 HOH L 5 605 34 HOH HOH . JB 6 HOH L 6 606 7 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id EA _atom_site.label_entity_id 4 _atom_site.Cartn_x 55.303 _atom_site.Cartn_y -13.932 _atom_site.Cartn_z -15.624 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 66.14 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 503 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 261 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #