data_8OP9
#
_model_server_result.job_id            jeN37KuCVJhcw6gf0iyAAQ 
_model_server_result.datetime_utc      '2024-10-19 12:28:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8op9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":604}' 
#
_entry.id    8OP9 
#
_exptl.entry_id    8OP9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8OP9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OP9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 O N N 
? 3 P N N 
? 3 W N N 
? 3 X N N 
? 3 CA N N 
? 3 DA N N 
? 3 JA N N 
? 3 KA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 198 A CYS 198 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 198 B CYS 198 1_555 B SG CYS 212 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 C SG CYS 198 C CYS 198 1_555 C SG CYS 212 C CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 D SG CYS 198 D CYS 198 1_555 D SG CYS 212 D CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 E SG CYS 198 E CYS 198 1_555 E SG CYS 212 E CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 140 A ASN 140 1_555 G C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale2 A ND2 ASN 234 A ASN 234 1_555 H C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.54 ? 
covale ? covale3 B ND2 ASN 140 B ASN 140 1_555 O C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale4 B ND2 ASN 234 B ASN 234 1_555 P C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.54 ? 
covale ? covale5 C ND2 ASN 140 C ASN 140 1_555 W C1 NAG . C NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale6 C ND2 ASN 234 C ASN 234 1_555 X C1 NAG . C NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.541 ? 
covale ? covale7 D ND2 ASN 140 D ASN 140 1_555 CA C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale8 D ND2 ASN 234 D ASN 234 1_555 DA C1 NAG . D NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.541 ? 
covale ? covale9 E ND2 ASN 140 E ASN 140 1_555 JA C1 NAG . E NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale10 E ND2 ASN 234 E ASN 234 1_555 KA C1 NAG . E NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.54 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 271 n n 
C1 O1 NAG sing 272 n n 
C1 O5 NAG sing 273 n n 
C1 H1 NAG sing 274 n n 
C2 C3 NAG sing 275 n n 
C2 N2 NAG sing 276 n n 
C2 H2 NAG sing 277 n n 
C3 C4 NAG sing 278 n n 
C3 O3 NAG sing 279 n n 
C3 H3 NAG sing 280 n n 
C4 C5 NAG sing 281 n n 
C4 O4 NAG sing 282 n n 
C4 H4 NAG sing 283 n n 
C5 C6 NAG sing 284 n n 
C5 O5 NAG sing 285 n n 
C5 H5 NAG sing 286 n n 
C6 O6 NAG sing 287 n n 
C6 H61 NAG sing 288 n n 
C6 H62 NAG sing 289 n n 
C7 C8 NAG sing 290 n n 
C7 N2 NAG sing 291 n n 
C7 O7 NAG doub 292 n n 
C8 H81 NAG sing 293 n n 
C8 H82 NAG sing 294 n n 
C8 H83 NAG sing 295 n n 
N2 HN2 NAG sing 296 n n 
O1 HO1 NAG sing 297 n n 
O3 HO3 NAG sing 298 n n 
O4 HO4 NAG sing 299 n n 
O6 HO6 NAG sing 300 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8OP9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 ABU A 1 601 601 ABU ABU . 
G 3 NAG A 1 602 602 NAG NAG . 
H 3 NAG A 1 603 603 NAG NAG . 
I 4 HEX A 1 604 701 HEX HEX . 
J 4 HEX A 1 605 702 HEX HEX . 
K 4 HEX A 1 606 703 HEX HEX . 
L 4 HEX A 1 607 704 HEX HEX . 
M 2 ABU A 1 608 601 ABU ABU . 
N 5 CL A 1 609 1 CL CL . 
O 3 NAG B 1 501 602 NAG NAG . 
P 3 NAG B 1 502 603 NAG NAG . 
Q 4 HEX B 1 503 701 HEX HEX . 
R 4 HEX B 1 504 702 HEX HEX . 
S 4 HEX B 1 505 703 HEX HEX . 
T 4 HEX B 1 506 704 HEX HEX . 
U 2 ABU C 1 601 601 ABU ABU . 
V 2 ABU C 1 602 601 ABU ABU . 
W 3 NAG C 1 603 602 NAG NAG . 
X 3 NAG C 1 604 603 NAG NAG . 
Y 4 HEX C 1 605 701 HEX HEX . 
Z 4 HEX C 1 606 702 HEX HEX . 
AA 4 HEX C 1 607 703 HEX HEX . 
BA 4 HEX C 1 608 704 HEX HEX . 
CA 3 NAG D 1 501 602 NAG NAG . 
DA 3 NAG D 1 502 603 NAG NAG . 
EA 4 HEX D 1 503 701 HEX HEX . 
FA 4 HEX D 1 504 702 HEX HEX . 
GA 4 HEX D 1 505 703 HEX HEX . 
HA 4 HEX D 1 506 704 HEX HEX . 
IA 2 ABU E 1 601 601 ABU ABU . 
JA 3 NAG E 1 602 602 NAG NAG . 
KA 3 NAG E 1 603 603 NAG NAG . 
LA 4 HEX E 1 604 701 HEX HEX . 
MA 4 HEX E 1 605 702 HEX HEX . 
NA 4 HEX E 1 606 703 HEX HEX . 
OA 4 HEX E 1 607 704 HEX HEX . 
PA 6 HOH A 1 701 802 HOH HOH . 
PA 6 HOH A 2 702 801 HOH HOH . 
QA 6 HOH B 1 601 802 HOH HOH . 
QA 6 HOH B 2 602 801 HOH HOH . 
RA 6 HOH C 1 701 802 HOH HOH . 
RA 6 HOH C 2 702 801 HOH HOH . 
SA 6 HOH D 1 601 802 HOH HOH . 
SA 6 HOH D 2 602 801 HOH HOH . 
TA 6 HOH E 1 701 802 HOH HOH . 
TA 6 HOH E 2 702 801 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . X 3 148.295 179.04 187.178 1 64.2 ? C1 NAG 604 C 1 
HETATM 2 C C2 NAG . . . X 3 147.283 179.463 186.119 1 64.2 ? C2 NAG 604 C 1 
HETATM 3 C C3 NAG . . . X 3 147.381 180.964 185.869 1 64.2 ? C3 NAG 604 C 1 
HETATM 4 C C4 NAG . . . X 3 147.249 181.73 187.179 1 64.2 ? C4 NAG 604 C 1 
HETATM 5 C C5 NAG . . . X 3 148.26 181.212 188.198 1 64.2 ? C5 NAG 604 C 1 
HETATM 6 C C6 NAG . . . X 3 148.106 181.844 189.561 1 64.2 ? C6 NAG 604 C 1 
HETATM 7 C C7 NAG . . . X 3 146.617 177.813 184.43 1 64.2 ? C7 NAG 604 C 1 
HETATM 8 C C8 NAG . . . X 3 146.983 177.144 183.139 1 64.2 ? C8 NAG 604 C 1 
HETATM 9 N N2 NAG . . . X 3 147.483 178.724 184.883 1 64.2 ? N2 NAG 604 C 1 
HETATM 10 O O3 NAG . . . X 3 146.356 181.363 184.967 1 64.2 ? O3 NAG 604 C 1 
HETATM 11 O O4 NAG . . . X 3 147.474 183.117 186.959 1 64.2 ? O4 NAG 604 C 1 
HETATM 12 O O5 NAG . . . X 3 148.088 179.797 188.374 1 64.2 ? O5 NAG 604 C 1 
HETATM 13 O O6 NAG . . . X 3 147.111 181.18 190.33 1 64.2 ? O6 NAG 604 C 1 
HETATM 14 O O7 NAG . . . X 3 145.585 177.539 185.033 1 64.2 ? O7 NAG 604 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#