data_8OPU # _model_server_result.job_id dTzB7SaLZ05RbDReKaIs3g _model_server_result.datetime_utc '2024-11-09 02:18:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8opu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":807}' # _entry.id 8OPU # _exptl.entry_id 8OPU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.612 _cell.angle_gamma 90 _cell.entry_id 8OPU _cell.length_a 248.757 _cell.length_b 135.081 _cell.length_c 119.741 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OPU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 T N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 158 n n C1 C2 GOL sing 159 n n C1 H11 GOL sing 160 n n C1 H12 GOL sing 161 n n O1 HO1 GOL sing 162 n n C2 O2 GOL sing 163 n n C2 C3 GOL sing 164 n n C2 H2 GOL sing 165 n n O2 HO2 GOL sing 166 n n C3 O3 GOL sing 167 n n C3 H31 GOL sing 168 n n C3 H32 GOL sing 169 n n O3 HO3 GOL sing 170 n n # _atom_sites.entry_id 8OPU _atom_sites.fract_transf_matrix[1][1] 0.00402 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001512 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 801 3 SO4 SO4 . F 3 SO4 A 1 802 6 SO4 SO4 . G 3 SO4 A 1 803 8 SO4 SO4 . H 3 SO4 A 1 804 22 SO4 SO4 . I 3 SO4 A 1 805 26 SO4 SO4 . J 4 08D A 1 806 8 08D 08D . K 5 GOL A 1 807 3 GOL GOL . L 3 SO4 B 1 801 4 SO4 SO4 . M 3 SO4 B 1 802 9 SO4 SO4 . N 3 SO4 B 1 803 15 SO4 SO4 . O 3 SO4 B 1 804 18 SO4 SO4 . P 3 SO4 B 1 805 20 SO4 SO4 . Q 3 SO4 B 1 806 25 SO4 SO4 . R 4 08D B 1 807 1 08D 08D . S 4 08D B 1 808 9 08D 08D . T 5 GOL B 1 809 2 GOL GOL . U 3 SO4 C 1 501 1 SO4 SO4 . V 3 SO4 C 1 502 11 SO4 SO4 . W 3 SO4 C 1 503 13 SO4 SO4 . X 3 SO4 C 1 504 16 SO4 SO4 . Y 3 SO4 C 1 505 17 SO4 SO4 . Z 3 SO4 C 1 506 23 SO4 SO4 . AA 4 08D C 1 507 7 08D 08D . BA 3 SO4 D 1 501 2 SO4 SO4 . CA 3 SO4 D 1 502 5 SO4 SO4 . DA 3 SO4 D 1 503 7 SO4 SO4 . EA 3 SO4 D 1 504 10 SO4 SO4 . FA 3 SO4 D 1 505 14 SO4 SO4 . GA 3 SO4 D 1 506 21 SO4 SO4 . HA 3 SO4 D 1 507 24 SO4 SO4 . IA 4 08D D 1 508 6 08D 08D . JA 6 HOH A 1 901 122 HOH HOH . JA 6 HOH A 2 902 72 HOH HOH . JA 6 HOH A 3 903 110 HOH HOH . JA 6 HOH A 4 904 51 HOH HOH . JA 6 HOH A 5 905 22 HOH HOH . JA 6 HOH A 6 906 57 HOH HOH . JA 6 HOH A 7 907 20 HOH HOH . JA 6 HOH A 8 908 125 HOH HOH . JA 6 HOH A 9 909 14 HOH HOH . JA 6 HOH A 10 910 79 HOH HOH . JA 6 HOH A 11 911 9 HOH HOH . JA 6 HOH A 12 912 43 HOH HOH . JA 6 HOH A 13 913 46 HOH HOH . JA 6 HOH A 14 914 88 HOH HOH . JA 6 HOH A 15 915 17 HOH HOH . JA 6 HOH A 16 916 123 HOH HOH . JA 6 HOH A 17 917 71 HOH HOH . JA 6 HOH A 18 918 13 HOH HOH . JA 6 HOH A 19 919 124 HOH HOH . JA 6 HOH A 20 920 35 HOH HOH . JA 6 HOH A 21 921 37 HOH HOH . JA 6 HOH A 22 922 119 HOH HOH . KA 6 HOH B 1 901 60 HOH HOH . KA 6 HOH B 2 902 83 HOH HOH . KA 6 HOH B 3 903 23 HOH HOH . KA 6 HOH B 4 904 65 HOH HOH . KA 6 HOH B 5 905 54 HOH HOH . KA 6 HOH B 6 906 45 HOH HOH . KA 6 HOH B 7 907 63 HOH HOH . KA 6 HOH B 8 908 90 HOH HOH . KA 6 HOH B 9 909 25 HOH HOH . KA 6 HOH B 10 910 76 HOH HOH . KA 6 HOH B 11 911 19 HOH HOH . KA 6 HOH B 12 912 106 HOH HOH . KA 6 HOH B 13 913 34 HOH HOH . KA 6 HOH B 14 914 36 HOH HOH . KA 6 HOH B 15 915 68 HOH HOH . KA 6 HOH B 16 916 96 HOH HOH . KA 6 HOH B 17 917 104 HOH HOH . KA 6 HOH B 18 918 107 HOH HOH . LA 6 HOH C 1 601 32 HOH HOH . LA 6 HOH C 2 602 24 HOH HOH . LA 6 HOH C 3 603 3 HOH HOH . LA 6 HOH C 4 604 21 HOH HOH . LA 6 HOH C 5 605 59 HOH HOH . LA 6 HOH C 6 606 102 HOH HOH . LA 6 HOH C 7 607 97 HOH HOH . LA 6 HOH C 8 608 121 HOH HOH . LA 6 HOH C 9 609 28 HOH HOH . LA 6 HOH C 10 610 113 HOH HOH . LA 6 HOH C 11 611 27 HOH HOH . MA 6 HOH D 1 601 16 HOH HOH . MA 6 HOH D 2 602 7 HOH HOH . MA 6 HOH D 3 603 66 HOH HOH . MA 6 HOH D 4 604 4 HOH HOH . MA 6 HOH D 5 605 48 HOH HOH . MA 6 HOH D 6 606 58 HOH HOH . MA 6 HOH D 7 607 86 HOH HOH . MA 6 HOH D 8 608 18 HOH HOH . MA 6 HOH D 9 609 99 HOH HOH . MA 6 HOH D 10 610 15 HOH HOH . MA 6 HOH D 11 611 10 HOH HOH . MA 6 HOH D 12 612 89 HOH HOH . MA 6 HOH D 13 613 91 HOH HOH . MA 6 HOH D 14 614 75 HOH HOH . MA 6 HOH D 15 615 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 5 -58.625 43.684 -37.517 1 68.86 ? C1 GOL 807 A 1 HETATM 2 O O1 GOL . . . K 5 -57.568 44.233 -36.777 1 62.38 ? O1 GOL 807 A 1 HETATM 3 C C2 GOL . . . K 5 -59.022 42.366 -36.821 1 76.61 ? C2 GOL 807 A 1 HETATM 4 O O2 GOL . . . K 5 -59.144 42.515 -35.449 1 76.12 ? O2 GOL 807 A 1 HETATM 5 C C3 GOL . . . K 5 -60.338 41.925 -37.5 1 75.06 ? C3 GOL 807 A 1 HETATM 6 O O3 GOL . . . K 5 -60.095 40.683 -38.104 1 62.71 ? O3 GOL 807 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #