data_8OPV # _model_server_result.job_id vqPe0UV1VqdtBX_OLJ_HnQ _model_server_result.datetime_utc '2024-11-15 06:52:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8opv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":807}' # _entry.id 8OPV # _exptl.entry_id 8OPV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.556 _cell.angle_gamma 90 _cell.entry_id 8OPV _cell.length_a 249.689 _cell.length_b 134.68 _cell.length_c 119.48 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OPV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8OPV _atom_sites.fract_transf_matrix[1][1] 0.004005 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001502 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 801 4 SO4 SO4 . F 3 SO4 A 1 802 9 SO4 SO4 . G 3 SO4 A 1 803 12 SO4 SO4 . H 3 SO4 A 1 804 21 SO4 SO4 . I 4 STL A 1 805 1 STL STL . J 4 STL A 1 806 2 STL STL . K 5 GOL A 1 807 1 GOL GOL . L 3 SO4 B 1 801 3 SO4 SO4 . M 3 SO4 B 1 802 16 SO4 SO4 . N 3 SO4 B 1 803 17 SO4 SO4 . O 3 SO4 B 1 804 20 SO4 SO4 . P 4 STL B 1 805 3 STL STL . Q 4 STL B 1 806 4 STL STL . R 3 SO4 C 1 501 1 SO4 SO4 . S 3 SO4 C 1 502 6 SO4 SO4 . T 3 SO4 C 1 503 11 SO4 SO4 . U 3 SO4 C 1 504 13 SO4 SO4 . V 3 SO4 C 1 505 14 SO4 SO4 . W 3 SO4 C 1 506 22 SO4 SO4 . X 3 SO4 D 1 501 2 SO4 SO4 . Y 3 SO4 D 1 502 5 SO4 SO4 . Z 3 SO4 D 1 503 7 SO4 SO4 . AA 3 SO4 D 1 504 8 SO4 SO4 . BA 3 SO4 D 1 505 10 SO4 SO4 . CA 3 SO4 D 1 506 15 SO4 SO4 . DA 6 HOH A 1 901 122 HOH HOH . DA 6 HOH A 2 902 102 HOH HOH . DA 6 HOH A 3 903 18 HOH HOH . DA 6 HOH A 4 904 8 HOH HOH . DA 6 HOH A 5 905 34 HOH HOH . DA 6 HOH A 6 906 42 HOH HOH . DA 6 HOH A 7 907 41 HOH HOH . DA 6 HOH A 8 908 136 HOH HOH . DA 6 HOH A 9 909 161 HOH HOH . DA 6 HOH A 10 910 25 HOH HOH . DA 6 HOH A 11 911 131 HOH HOH . DA 6 HOH A 12 912 190 HOH HOH . DA 6 HOH A 13 913 181 HOH HOH . DA 6 HOH A 14 914 15 HOH HOH . DA 6 HOH A 15 915 79 HOH HOH . DA 6 HOH A 16 916 198 HOH HOH . DA 6 HOH A 17 917 67 HOH HOH . DA 6 HOH A 18 918 58 HOH HOH . DA 6 HOH A 19 919 92 HOH HOH . DA 6 HOH A 20 920 144 HOH HOH . DA 6 HOH A 21 921 163 HOH HOH . DA 6 HOH A 22 922 182 HOH HOH . DA 6 HOH A 23 923 208 HOH HOH . DA 6 HOH A 24 924 36 HOH HOH . DA 6 HOH A 25 925 205 HOH HOH . DA 6 HOH A 26 926 117 HOH HOH . DA 6 HOH A 27 927 53 HOH HOH . DA 6 HOH A 28 928 213 HOH HOH . DA 6 HOH A 29 929 214 HOH HOH . DA 6 HOH A 30 930 32 HOH HOH . DA 6 HOH A 31 931 68 HOH HOH . DA 6 HOH A 32 932 124 HOH HOH . DA 6 HOH A 33 933 187 HOH HOH . DA 6 HOH A 34 934 206 HOH HOH . DA 6 HOH A 35 935 196 HOH HOH . EA 6 HOH B 1 901 170 HOH HOH . EA 6 HOH B 2 902 94 HOH HOH . EA 6 HOH B 3 903 24 HOH HOH . EA 6 HOH B 4 904 135 HOH HOH . EA 6 HOH B 5 905 39 HOH HOH . EA 6 HOH B 6 906 203 HOH HOH . EA 6 HOH B 7 907 140 HOH HOH . EA 6 HOH B 8 908 149 HOH HOH . EA 6 HOH B 9 909 55 HOH HOH . EA 6 HOH B 10 910 7 HOH HOH . EA 6 HOH B 11 911 167 HOH HOH . EA 6 HOH B 12 912 104 HOH HOH . EA 6 HOH B 13 913 16 HOH HOH . EA 6 HOH B 14 914 155 HOH HOH . EA 6 HOH B 15 915 188 HOH HOH . EA 6 HOH B 16 916 166 HOH HOH . EA 6 HOH B 17 917 4 HOH HOH . EA 6 HOH B 18 918 126 HOH HOH . EA 6 HOH B 19 919 197 HOH HOH . EA 6 HOH B 20 920 21 HOH HOH . EA 6 HOH B 21 921 95 HOH HOH . EA 6 HOH B 22 922 48 HOH HOH . EA 6 HOH B 23 923 106 HOH HOH . EA 6 HOH B 24 924 186 HOH HOH . EA 6 HOH B 25 925 13 HOH HOH . EA 6 HOH B 26 926 107 HOH HOH . EA 6 HOH B 27 927 143 HOH HOH . EA 6 HOH B 28 928 129 HOH HOH . EA 6 HOH B 29 929 215 HOH HOH . EA 6 HOH B 30 930 113 HOH HOH . EA 6 HOH B 31 931 202 HOH HOH . EA 6 HOH B 32 932 87 HOH HOH . EA 6 HOH B 33 933 201 HOH HOH . EA 6 HOH B 34 934 5 HOH HOH . FA 6 HOH C 1 601 23 HOH HOH . FA 6 HOH C 2 602 99 HOH HOH . FA 6 HOH C 3 603 12 HOH HOH . FA 6 HOH C 4 604 169 HOH HOH . FA 6 HOH C 5 605 72 HOH HOH . FA 6 HOH C 6 606 3 HOH HOH . FA 6 HOH C 7 607 47 HOH HOH . FA 6 HOH C 8 608 98 HOH HOH . FA 6 HOH C 9 609 22 HOH HOH . FA 6 HOH C 10 610 132 HOH HOH . FA 6 HOH C 11 611 114 HOH HOH . FA 6 HOH C 12 612 148 HOH HOH . FA 6 HOH C 13 613 153 HOH HOH . FA 6 HOH C 14 614 19 HOH HOH . FA 6 HOH C 15 615 111 HOH HOH . FA 6 HOH C 16 616 156 HOH HOH . FA 6 HOH C 17 617 64 HOH HOH . FA 6 HOH C 18 618 40 HOH HOH . FA 6 HOH C 19 619 180 HOH HOH . FA 6 HOH C 20 620 38 HOH HOH . FA 6 HOH C 21 621 80 HOH HOH . FA 6 HOH C 22 622 157 HOH HOH . FA 6 HOH C 23 623 133 HOH HOH . FA 6 HOH C 24 624 37 HOH HOH . FA 6 HOH C 25 625 49 HOH HOH . FA 6 HOH C 26 626 209 HOH HOH . FA 6 HOH C 27 627 54 HOH HOH . FA 6 HOH C 28 628 184 HOH HOH . FA 6 HOH C 29 629 207 HOH HOH . FA 6 HOH C 30 630 110 HOH HOH . FA 6 HOH C 31 631 211 HOH HOH . FA 6 HOH C 32 632 162 HOH HOH . GA 6 HOH D 1 601 151 HOH HOH . GA 6 HOH D 2 602 27 HOH HOH . GA 6 HOH D 3 603 185 HOH HOH . GA 6 HOH D 4 604 6 HOH HOH . GA 6 HOH D 5 605 10 HOH HOH . GA 6 HOH D 6 606 204 HOH HOH . GA 6 HOH D 7 607 51 HOH HOH . GA 6 HOH D 8 608 172 HOH HOH . GA 6 HOH D 9 609 138 HOH HOH . GA 6 HOH D 10 610 142 HOH HOH . GA 6 HOH D 11 611 159 HOH HOH . GA 6 HOH D 12 612 152 HOH HOH . GA 6 HOH D 13 613 28 HOH HOH . GA 6 HOH D 14 614 158 HOH HOH . GA 6 HOH D 15 615 141 HOH HOH . GA 6 HOH D 16 616 194 HOH HOH . GA 6 HOH D 17 617 74 HOH HOH . GA 6 HOH D 18 618 93 HOH HOH . GA 6 HOH D 19 619 118 HOH HOH . GA 6 HOH D 20 620 171 HOH HOH . GA 6 HOH D 21 621 168 HOH HOH . GA 6 HOH D 22 622 173 HOH HOH . GA 6 HOH D 23 623 101 HOH HOH . GA 6 HOH D 24 624 35 HOH HOH . GA 6 HOH D 25 625 14 HOH HOH . GA 6 HOH D 26 626 50 HOH HOH . GA 6 HOH D 27 627 90 HOH HOH . GA 6 HOH D 28 628 212 HOH HOH . GA 6 HOH D 29 629 200 HOH HOH . GA 6 HOH D 30 630 109 HOH HOH . GA 6 HOH D 31 631 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 5 -50.512 13.256 -55.549 1 93.33 ? C1 GOL 807 A 1 HETATM 2 O O1 GOL . . . K 5 -51.473 13.863 -54.741 1 83.39 ? O1 GOL 807 A 1 HETATM 3 C C2 GOL . . . K 5 -49.186 14.04 -55.355 1 102.16 ? C2 GOL 807 A 1 HETATM 4 O O2 GOL . . . K 5 -48.188 13.255 -54.795 1 96.9 ? O2 GOL 807 A 1 HETATM 5 C C3 GOL . . . K 5 -48.807 14.546 -56.767 1 94.87 ? C3 GOL 807 A 1 HETATM 6 O O3 GOL . . . K 5 -47.421 14.701 -56.781 1 87.43 ? O3 GOL 807 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #