data_8OPX # _model_server_result.job_id SRn6f1y_pm8YyPSNK2FLqQ _model_server_result.datetime_utc '2024-11-26 03:49:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8opx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":501}' # _entry.id 8OPX # _exptl.entry_id 8OPX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 24 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.565 _cell.angle_gamma 90 _cell.entry_id 8OPX _cell.length_a 248.41 _cell.length_b 135.164 _cell.length_c 119.158 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OPX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 Z N N ? 4 AA N N ? 4 BA N N ? 4 CA N N ? 4 DA N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O1 _pdbx_entity_branch_link.leaving_atom_id_2 HO1 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E GLC 1 G 1 GLC C 501 XXX 3 n E GLC 2 G 2 GLC C 501 XXX 3 n F GLC 1 H 1 GLC D 501 XXX 3 n F GLC 2 H 2 GLC D 501 XXX # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C1 GLC . G GLC 1 1_555 E O1 GLC . G GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale2 F C1 GLC . H GLC 1 1_555 F O1 GLC . H GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 314 n n S O2 SO4 doub 315 n n S O3 SO4 sing 316 n n S O4 SO4 sing 317 n n # _atom_sites.entry_id 8OPX _atom_sites.fract_transf_matrix[1][1] 0.004026 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00151 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007398 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 SO4 B 1 801 1 SO4 SO4 . H 4 SO4 B 1 802 6 SO4 SO4 . I 4 SO4 B 1 803 8 SO4 SO4 . J 4 SO4 B 1 804 10 SO4 SO4 . K 4 SO4 B 1 805 18 SO4 SO4 . L 4 SO4 B 1 806 20 SO4 SO4 . M 4 SO4 C 1 501 4 SO4 SO4 . N 4 SO4 C 1 502 11 SO4 SO4 . O 4 SO4 C 1 503 14 SO4 SO4 . P 4 SO4 C 1 504 16 SO4 SO4 . Q 4 SO4 C 1 505 19 SO4 SO4 . R 4 SO4 C 1 506 21 SO4 SO4 . S 4 SO4 C 1 507 22 SO4 SO4 . T 4 SO4 A 1 801 3 SO4 SO4 . U 4 SO4 A 1 802 5 SO4 SO4 . V 4 SO4 A 1 803 12 SO4 SO4 . W 4 SO4 A 1 804 13 SO4 SO4 . X 4 SO4 A 1 805 24 SO4 SO4 . Y 4 SO4 D 1 501 2 SO4 SO4 . Z 4 SO4 D 1 502 7 SO4 SO4 . AA 4 SO4 D 1 503 9 SO4 SO4 . BA 4 SO4 D 1 504 15 SO4 SO4 . CA 4 SO4 D 1 505 17 SO4 SO4 . DA 4 SO4 D 1 506 23 SO4 SO4 . EA 5 HOH B 1 901 9 HOH HOH . EA 5 HOH B 2 902 41 HOH HOH . EA 5 HOH B 3 903 22 HOH HOH . EA 5 HOH B 4 904 33 HOH HOH . EA 5 HOH B 5 905 21 HOH HOH . EA 5 HOH B 6 906 35 HOH HOH . EA 5 HOH B 7 907 48 HOH HOH . EA 5 HOH B 8 908 6 HOH HOH . EA 5 HOH B 9 909 27 HOH HOH . EA 5 HOH B 10 910 14 HOH HOH . EA 5 HOH B 11 911 36 HOH HOH . EA 5 HOH B 12 912 42 HOH HOH . EA 5 HOH B 13 913 45 HOH HOH . EA 5 HOH B 14 914 37 HOH HOH . FA 5 HOH C 1 601 16 HOH HOH . FA 5 HOH C 2 602 17 HOH HOH . FA 5 HOH C 3 603 2 HOH HOH . FA 5 HOH C 4 604 15 HOH HOH . FA 5 HOH C 5 605 4 HOH HOH . FA 5 HOH C 6 606 5 HOH HOH . FA 5 HOH C 7 607 32 HOH HOH . FA 5 HOH C 8 608 34 HOH HOH . FA 5 HOH C 9 609 40 HOH HOH . GA 5 HOH A 1 901 3 HOH HOH . GA 5 HOH A 2 902 30 HOH HOH . GA 5 HOH A 3 903 26 HOH HOH . GA 5 HOH A 4 904 24 HOH HOH . GA 5 HOH A 5 905 1 HOH HOH . GA 5 HOH A 6 906 19 HOH HOH . GA 5 HOH A 7 907 44 HOH HOH . GA 5 HOH A 8 908 18 HOH HOH . GA 5 HOH A 9 909 20 HOH HOH . GA 5 HOH A 10 910 31 HOH HOH . GA 5 HOH A 11 911 10 HOH HOH . GA 5 HOH A 12 912 29 HOH HOH . GA 5 HOH A 13 913 39 HOH HOH . HA 5 HOH D 1 601 28 HOH HOH . HA 5 HOH D 2 602 38 HOH HOH . HA 5 HOH D 3 603 12 HOH HOH . HA 5 HOH D 4 604 7 HOH HOH . HA 5 HOH D 5 605 47 HOH HOH . HA 5 HOH D 6 606 25 HOH HOH . HA 5 HOH D 7 607 13 HOH HOH . HA 5 HOH D 8 608 8 HOH HOH . HA 5 HOH D 9 609 43 HOH HOH . HA 5 HOH D 10 610 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . M 4 69.992 4.673 72.307 1 79.68 ? S SO4 501 C 1 HETATM 2 O O1 SO4 . . . M 4 69.413 4.699 70.97 1 92.49 ? O1 SO4 501 C 1 HETATM 3 O O2 SO4 . . . M 4 68.916 4.6 73.289 1 96.4 ? O2 SO4 501 C 1 HETATM 4 O O3 SO4 . . . M 4 70.867 3.513 72.448 1 89.91 ? O3 SO4 501 C 1 HETATM 5 O O4 SO4 . . . M 4 70.758 5.897 72.517 1 86.96 ? O4 SO4 501 C 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #