data_8OPY
#
_model_server_result.job_id            YzYf2-VkCk-vRhA5kV3Qjg 
_model_server_result.datetime_utc      '2024-11-19 07:29:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8opy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":502}' 
#
_entry.id    8OPY 
#
_exptl.entry_id    8OPY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              250.125 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6,7-DINITROQUINOXALINE-2,3-DIONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.817 
_cell.angle_gamma         90 
_cell.entry_id            8OPY 
_cell.length_a            249.825 
_cell.length_b            134.532 
_cell.length_c            118.838 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OPY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 Y N N 
? 5 Z N N 
#
_chem_comp.formula           'C8 H2 N4 O6' 
_chem_comp.formula_weight    250.125 
_chem_comp.id                DNQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6,7-DINITROQUINOXALINE-2,3-DIONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DNQX 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 DNQ doub 83 n n 
O2 C2 DNQ doub 84 n n 
C1 C2 DNQ sing 85 n n 
C1 N1 DNQ sing 86 n n 
C2 N2 DNQ sing 87 n n 
N1 C3 DNQ doub 88 n n 
N2 C4 DNQ doub 89 n n 
C3 C4 DNQ sing 90 n y 
C3 C5 DNQ sing 91 n y 
C4 C6 DNQ sing 92 n y 
C5 C7 DNQ doub 93 n y 
C5 H51 DNQ sing 94 n n 
C6 C8 DNQ doub 95 n y 
C6 H61 DNQ sing 96 n n 
C7 C8 DNQ sing 97 n y 
C7 N3 DNQ sing 98 n n 
C8 N4 DNQ sing 99 n n 
N3 O3 DNQ sing 100 n n 
N3 O5 DNQ doub 101 n n 
N4 O4 DNQ sing 102 n n 
N4 O6 DNQ doub 103 n n 
#
_atom_sites.entry_id                     8OPY 
_atom_sites.fract_transf_matrix[1][1]    0.004003 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001522 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007433 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009002 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 801 801 GOL GOL . 
F 3 GOL A 1 802 901 GOL GOL . 
G 4 SO4 A 1 803 4 SO4 SO4 . 
H 4 SO4 A 1 804 11 SO4 SO4 . 
I 4 SO4 A 1 805 12 SO4 SO4 . 
J 4 SO4 A 1 806 17 SO4 SO4 . 
K 4 SO4 A 1 807 21 SO4 SO4 . 
L 3 GOL B 1 801 801 GOL GOL . 
M 4 SO4 B 1 802 5 SO4 SO4 . 
N 4 SO4 B 1 803 6 SO4 SO4 . 
O 4 SO4 B 1 804 7 SO4 SO4 . 
P 4 SO4 B 1 805 16 SO4 SO4 . 
Q 4 SO4 B 1 806 18 SO4 SO4 . 
R 4 SO4 B 1 807 19 SO4 SO4 . 
S 4 SO4 B 1 808 20 SO4 SO4 . 
T 4 SO4 C 1 501 1 SO4 SO4 . 
U 4 SO4 C 1 502 9 SO4 SO4 . 
V 4 SO4 C 1 503 10 SO4 SO4 . 
W 4 SO4 C 1 504 13 SO4 SO4 . 
X 4 SO4 C 1 505 14 SO4 SO4 . 
Y 5 DNQ D 1 501 501 DNQ XXX . 
Z 5 DNQ D 1 502 502 DNQ XXX . 
AA 4 SO4 D 1 503 2 SO4 SO4 . 
BA 4 SO4 D 1 504 3 SO4 SO4 . 
CA 4 SO4 D 1 505 8 SO4 SO4 . 
DA 4 SO4 D 1 506 15 SO4 SO4 . 
EA 6 HOH A 1 901 41 HOH HOH . 
EA 6 HOH A 2 902 136 HOH HOH . 
EA 6 HOH A 3 903 45 HOH HOH . 
EA 6 HOH A 4 904 113 HOH HOH . 
EA 6 HOH A 5 905 66 HOH HOH . 
EA 6 HOH A 6 906 64 HOH HOH . 
EA 6 HOH A 7 907 19 HOH HOH . 
EA 6 HOH A 8 908 92 HOH HOH . 
EA 6 HOH A 9 909 103 HOH HOH . 
EA 6 HOH A 10 910 47 HOH HOH . 
EA 6 HOH A 11 911 10 HOH HOH . 
EA 6 HOH A 12 912 102 HOH HOH . 
EA 6 HOH A 13 913 139 HOH HOH . 
EA 6 HOH A 14 914 90 HOH HOH . 
EA 6 HOH A 15 915 79 HOH HOH . 
EA 6 HOH A 16 916 99 HOH HOH . 
EA 6 HOH A 17 917 4 HOH HOH . 
EA 6 HOH A 18 918 105 HOH HOH . 
EA 6 HOH A 19 919 112 HOH HOH . 
EA 6 HOH A 20 920 86 HOH HOH . 
EA 6 HOH A 21 921 63 HOH HOH . 
EA 6 HOH A 22 922 126 HOH HOH . 
EA 6 HOH A 23 923 85 HOH HOH . 
EA 6 HOH A 24 924 101 HOH HOH . 
EA 6 HOH A 25 925 106 HOH HOH . 
EA 6 HOH A 26 926 107 HOH HOH . 
EA 6 HOH A 27 927 118 HOH HOH . 
EA 6 HOH A 28 928 6 HOH HOH . 
EA 6 HOH A 29 929 27 HOH HOH . 
FA 6 HOH B 1 901 134 HOH HOH . 
FA 6 HOH B 2 902 38 HOH HOH . 
FA 6 HOH B 3 903 97 HOH HOH . 
FA 6 HOH B 4 904 123 HOH HOH . 
FA 6 HOH B 5 905 76 HOH HOH . 
FA 6 HOH B 6 906 74 HOH HOH . 
FA 6 HOH B 7 907 35 HOH HOH . 
FA 6 HOH B 8 908 87 HOH HOH . 
FA 6 HOH B 9 909 15 HOH HOH . 
FA 6 HOH B 10 910 32 HOH HOH . 
FA 6 HOH B 11 911 73 HOH HOH . 
FA 6 HOH B 12 912 31 HOH HOH . 
FA 6 HOH B 13 913 143 HOH HOH . 
FA 6 HOH B 14 914 24 HOH HOH . 
FA 6 HOH B 15 915 116 HOH HOH . 
FA 6 HOH B 16 916 46 HOH HOH . 
FA 6 HOH B 17 917 48 HOH HOH . 
FA 6 HOH B 18 918 142 HOH HOH . 
FA 6 HOH B 19 919 55 HOH HOH . 
FA 6 HOH B 20 920 71 HOH HOH . 
FA 6 HOH B 21 921 96 HOH HOH . 
FA 6 HOH B 22 922 129 HOH HOH . 
FA 6 HOH B 23 923 60 HOH HOH . 
FA 6 HOH B 24 924 125 HOH HOH . 
FA 6 HOH B 25 925 98 HOH HOH . 
FA 6 HOH B 26 926 26 HOH HOH . 
FA 6 HOH B 27 927 43 HOH HOH . 
FA 6 HOH B 28 928 52 HOH HOH . 
FA 6 HOH B 29 929 62 HOH HOH . 
FA 6 HOH B 30 930 49 HOH HOH . 
FA 6 HOH B 31 931 72 HOH HOH . 
FA 6 HOH B 32 932 81 HOH HOH . 
FA 6 HOH B 33 933 42 HOH HOH . 
FA 6 HOH B 34 934 68 HOH HOH . 
GA 6 HOH C 1 601 20 HOH HOH . 
GA 6 HOH C 2 602 50 HOH HOH . 
GA 6 HOH C 3 603 138 HOH HOH . 
GA 6 HOH C 4 604 18 HOH HOH . 
GA 6 HOH C 5 605 69 HOH HOH . 
GA 6 HOH C 6 606 16 HOH HOH . 
GA 6 HOH C 7 607 25 HOH HOH . 
GA 6 HOH C 8 608 67 HOH HOH . 
GA 6 HOH C 9 609 115 HOH HOH . 
GA 6 HOH C 10 610 122 HOH HOH . 
GA 6 HOH C 11 611 9 HOH HOH . 
GA 6 HOH C 12 612 58 HOH HOH . 
GA 6 HOH C 13 613 40 HOH HOH . 
GA 6 HOH C 14 614 65 HOH HOH . 
GA 6 HOH C 15 615 132 HOH HOH . 
GA 6 HOH C 16 616 44 HOH HOH . 
GA 6 HOH C 17 617 8 HOH HOH . 
GA 6 HOH C 18 618 1 HOH HOH . 
GA 6 HOH C 19 619 91 HOH HOH . 
GA 6 HOH C 20 620 120 HOH HOH . 
GA 6 HOH C 21 621 77 HOH HOH . 
GA 6 HOH C 22 622 57 HOH HOH . 
GA 6 HOH C 23 623 93 HOH HOH . 
GA 6 HOH C 24 624 23 HOH HOH . 
GA 6 HOH C 25 625 51 HOH HOH . 
GA 6 HOH C 26 626 75 HOH HOH . 
GA 6 HOH C 27 627 111 HOH HOH . 
GA 6 HOH C 28 628 36 HOH HOH . 
GA 6 HOH C 29 629 140 HOH HOH . 
GA 6 HOH C 30 630 11 HOH HOH . 
GA 6 HOH C 31 631 119 HOH HOH . 
GA 6 HOH C 32 632 59 HOH HOH . 
GA 6 HOH C 33 633 39 HOH HOH . 
GA 6 HOH C 34 634 95 HOH HOH . 
GA 6 HOH C 35 635 94 HOH HOH . 
GA 6 HOH C 36 636 137 HOH HOH . 
GA 6 HOH C 37 637 88 HOH HOH . 
GA 6 HOH C 38 638 82 HOH HOH . 
GA 6 HOH C 39 639 14 HOH HOH . 
GA 6 HOH C 40 640 128 HOH HOH . 
GA 6 HOH C 41 641 78 HOH HOH . 
HA 6 HOH D 1 601 21 HOH HOH . 
HA 6 HOH D 2 602 34 HOH HOH . 
HA 6 HOH D 3 603 117 HOH HOH . 
HA 6 HOH D 4 604 12 HOH HOH . 
HA 6 HOH D 5 605 131 HOH HOH . 
HA 6 HOH D 6 606 80 HOH HOH . 
HA 6 HOH D 7 607 2 HOH HOH . 
HA 6 HOH D 8 608 135 HOH HOH . 
HA 6 HOH D 9 609 28 HOH HOH . 
HA 6 HOH D 10 610 17 HOH HOH . 
HA 6 HOH D 11 611 13 HOH HOH . 
HA 6 HOH D 12 612 56 HOH HOH . 
HA 6 HOH D 13 613 29 HOH HOH . 
HA 6 HOH D 14 614 130 HOH HOH . 
HA 6 HOH D 15 615 7 HOH HOH . 
HA 6 HOH D 16 616 22 HOH HOH . 
HA 6 HOH D 17 617 141 HOH HOH . 
HA 6 HOH D 18 618 70 HOH HOH . 
HA 6 HOH D 19 619 37 HOH HOH . 
HA 6 HOH D 20 620 104 HOH HOH . 
HA 6 HOH D 21 621 84 HOH HOH . 
HA 6 HOH D 22 622 127 HOH HOH . 
HA 6 HOH D 23 623 110 HOH HOH . 
HA 6 HOH D 24 624 109 HOH HOH . 
HA 6 HOH D 25 625 83 HOH HOH . 
HA 6 HOH D 26 626 53 HOH HOH . 
HA 6 HOH D 27 627 33 HOH HOH . 
HA 6 HOH D 28 628 100 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 DNQ . B . Z 5 1.358 16.972 -0.486 0.25 99.13 ? O1 DNQ 502 D 1 
HETATM 2 O O2 DNQ . B . Z 5 -1.271 16.97 0.569 0.25 99.38 ? O2 DNQ 502 D 1 
HETATM 3 C C1 DNQ . B . Z 5 0.742 15.915 -0.258 0.25 101.98 ? C1 DNQ 502 D 1 
HETATM 4 C C2 DNQ . B . Z 5 -0.662 15.913 0.32 0.25 102.25 ? C2 DNQ 502 D 1 
HETATM 5 N N1 DNQ . B . Z 5 1.388 14.668 -0.545 0.25 101.63 ? N1 DNQ 502 D 1 
HETATM 6 N N2 DNQ . B . Z 5 -1.316 14.665 0.58 0.25 102.02 ? N2 DNQ 502 D 1 
HETATM 7 C C3 DNQ . B . Z 5 0.699 13.51 -0.275 0.25 102.7 ? C3 DNQ 502 D 1 
HETATM 8 C C4 DNQ . B . Z 5 -0.636 13.508 0.285 0.25 102.32 ? C4 DNQ 502 D 1 
HETATM 9 C C5 DNQ . B . Z 5 1.321 12.294 -0.56 0.25 101.94 ? C5 DNQ 502 D 1 
HETATM 10 C C6 DNQ . B . Z 5 -1.267 12.291 0.542 0.25 101.99 ? C6 DNQ 502 D 1 
HETATM 11 C C7 DNQ . B . Z 5 0.66 11.112 -0.301 0.25 103.4 ? C7 DNQ 502 D 1 
HETATM 12 C C8 DNQ . B . Z 5 -0.615 11.111 0.255 0.25 103.38 ? C8 DNQ 502 D 1 
HETATM 13 N N3 DNQ . B . Z 5 1.353 9.876 -0.667 0.25 101.9 ? N3 DNQ 502 D 1 
HETATM 14 N N4 DNQ . B . Z 5 -1.32 9.872 0.589 0.25 101.11 ? N4 DNQ 502 D 1 
HETATM 15 O O3 DNQ . B . Z 5 2.453 9.664 -0.184 0.25 99.83 ? O3 DNQ 502 D 1 
HETATM 16 O O4 DNQ . B . Z 5 -0.714 9.01 1.207 0.25 103.48 -1 O4 DNQ 502 D 1 
HETATM 17 O O5 DNQ . B . Z 5 0.804 9.115 -1.448 0.25 103.21 -1 O5 DNQ 502 D 1 
HETATM 18 O O6 DNQ . B . Z 5 -2.485 9.758 0.242 0.25 100.11 ? O6 DNQ 502 D 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#