data_8OQ6
#
_model_server_result.job_id            WucjH2DPyvirVcd2cx7UHg 
_model_server_result.datetime_utc      '2024-10-19 15:25:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8oq6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":502}' 
#
_entry.id    8OQ6 
#
_exptl.entry_id    8OQ6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8OQ6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8OQ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 R N N 
? 2 S N N 
? 2 AA N N 
? 2 BA N N 
? 2 JA N N 
? 2 KA N N 
? 2 SA N N 
? 2 TA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 198 A CYS 198 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 198 B CYS 198 1_555 B SG CYS 212 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 C SG CYS 198 C CYS 198 1_555 C SG CYS 212 C CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 D SG CYS 198 D CYS 198 1_555 D SG CYS 212 D CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 E SG CYS 198 E CYS 198 1_555 E SG CYS 212 E CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 140 A ASN 140 1_555 F C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? 
covale ? covale2 A ND2 ASN 234 A ASN 234 1_555 G C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? 
covale ? covale3 B ND2 ASN 140 B ASN 140 1_555 R C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? 
covale ? covale4 B ND2 ASN 234 B ASN 234 1_555 S C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? 
covale ? covale5 C ND2 ASN 140 C ASN 140 1_555 AA C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? 
covale ? covale6 C ND2 ASN 234 C ASN 234 1_555 BA C1 NAG . C NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? 
covale ? covale7 D ND2 ASN 140 D ASN 140 1_555 JA C1 NAG . D NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? 
covale ? covale8 D ND2 ASN 234 D ASN 234 1_555 KA C1 NAG . D NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? 
covale ? covale9 E ND2 ASN 140 E ASN 140 1_555 SA C1 NAG . E NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? 
covale ? covale10 E ND2 ASN 234 E ASN 234 1_555 TA C1 NAG . E NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 332 n n 
C1 O1 NAG sing 333 n n 
C1 O5 NAG sing 334 n n 
C1 H1 NAG sing 335 n n 
C2 C3 NAG sing 336 n n 
C2 N2 NAG sing 337 n n 
C2 H2 NAG sing 338 n n 
C3 C4 NAG sing 339 n n 
C3 O3 NAG sing 340 n n 
C3 H3 NAG sing 341 n n 
C4 C5 NAG sing 342 n n 
C4 O4 NAG sing 343 n n 
C4 H4 NAG sing 344 n n 
C5 C6 NAG sing 345 n n 
C5 O5 NAG sing 346 n n 
C5 H5 NAG sing 347 n n 
C6 O6 NAG sing 348 n n 
C6 H61 NAG sing 349 n n 
C6 H62 NAG sing 350 n n 
C7 C8 NAG sing 351 n n 
C7 N2 NAG sing 352 n n 
C7 O7 NAG doub 353 n n 
C8 H81 NAG sing 354 n n 
C8 H82 NAG sing 355 n n 
C8 H83 NAG sing 356 n n 
N2 HN2 NAG sing 357 n n 
O1 HO1 NAG sing 358 n n 
O3 HO3 NAG sing 359 n n 
O4 HO4 NAG sing 360 n n 
O6 HO6 NAG sing 361 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8OQ6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NAG A 1 501 602 NAG NAG . 
G 2 NAG A 1 502 603 NAG NAG . 
H 3 OCT A 1 503 701 OCT OCT . 
I 4 D10 A 1 504 703 D10 D10 . 
J 4 D10 A 1 505 704 D10 D10 . 
K 5 7P9 A 1 506 705 7P9 PCW . 
L 5 7P9 A 1 507 706 7P9 PCW . 
M 3 OCT A 1 508 707 OCT OCT . 
N 4 D10 A 1 509 702 D10 D10 . 
O 6 CL A 1 510 1 CL CL . 
P 6 CL A 1 511 2 CL CL . 
Q 4 D10 B 1 501 702 D10 D10 . 
R 2 NAG B 1 502 602 NAG NAG . 
S 2 NAG B 1 503 603 NAG NAG . 
T 3 OCT B 1 504 701 OCT OCT . 
U 4 D10 B 1 505 703 D10 D10 . 
V 4 D10 B 1 506 704 D10 D10 . 
W 5 7P9 B 1 507 705 7P9 PCW . 
X 5 7P9 B 1 508 706 7P9 PCW . 
Y 3 OCT B 1 509 707 OCT OCT . 
Z 4 D10 C 1 501 702 D10 D10 . 
AA 2 NAG C 1 502 602 NAG NAG . 
BA 2 NAG C 1 503 603 NAG NAG . 
CA 3 OCT C 1 504 701 OCT OCT . 
DA 4 D10 C 1 505 703 D10 D10 . 
EA 4 D10 C 1 506 704 D10 D10 . 
FA 5 7P9 C 1 507 705 7P9 PCW . 
GA 5 7P9 C 1 508 706 7P9 PCW . 
HA 3 OCT C 1 509 707 OCT OCT . 
IA 4 D10 D 1 501 702 D10 D10 . 
JA 2 NAG D 1 502 602 NAG NAG . 
KA 2 NAG D 1 503 603 NAG NAG . 
LA 3 OCT D 1 504 701 OCT OCT . 
MA 4 D10 D 1 505 703 D10 D10 . 
NA 4 D10 D 1 506 704 D10 D10 . 
OA 5 7P9 D 1 507 705 7P9 PCW . 
PA 5 7P9 D 1 508 706 7P9 PCW . 
QA 3 OCT D 1 509 707 OCT OCT . 
RA 4 D10 E 1 501 702 D10 D10 . 
SA 2 NAG E 1 502 602 NAG NAG . 
TA 2 NAG E 1 503 603 NAG NAG . 
UA 3 OCT E 1 504 701 OCT OCT . 
VA 4 D10 E 1 505 703 D10 D10 . 
WA 4 D10 E 1 506 704 D10 D10 . 
XA 5 7P9 E 1 507 705 7P9 PCW . 
YA 5 7P9 E 1 508 706 7P9 PCW . 
ZA 3 OCT E 1 509 707 OCT OCT . 
AB 7 HOH A 1 601 810 HOH HOH . 
AB 7 HOH A 2 602 806 HOH HOH . 
AB 7 HOH A 3 603 811 HOH HOH . 
AB 7 HOH A 4 604 805 HOH HOH . 
AB 7 HOH A 5 605 813 HOH HOH . 
AB 7 HOH A 6 606 815 HOH HOH . 
AB 7 HOH A 7 607 812 HOH HOH . 
AB 7 HOH A 8 608 807 HOH HOH . 
AB 7 HOH A 9 609 802 HOH HOH . 
AB 7 HOH A 10 610 804 HOH HOH . 
AB 7 HOH A 11 611 808 HOH HOH . 
AB 7 HOH A 12 612 803 HOH HOH . 
AB 7 HOH A 13 613 814 HOH HOH . 
AB 7 HOH A 14 614 801 HOH HOH . 
AB 7 HOH A 15 615 809 HOH HOH . 
BB 7 HOH B 1 601 810 HOH HOH . 
BB 7 HOH B 2 602 806 HOH HOH . 
BB 7 HOH B 3 603 811 HOH HOH . 
BB 7 HOH B 4 604 805 HOH HOH . 
BB 7 HOH B 5 605 813 HOH HOH . 
BB 7 HOH B 6 606 807 HOH HOH . 
BB 7 HOH B 7 607 815 HOH HOH . 
BB 7 HOH B 8 608 812 HOH HOH . 
BB 7 HOH B 9 609 804 HOH HOH . 
BB 7 HOH B 10 610 802 HOH HOH . 
BB 7 HOH B 11 611 808 HOH HOH . 
BB 7 HOH B 12 612 803 HOH HOH . 
BB 7 HOH B 13 613 814 HOH HOH . 
BB 7 HOH B 14 614 801 HOH HOH . 
BB 7 HOH B 15 615 809 HOH HOH . 
CB 7 HOH C 1 601 810 HOH HOH . 
CB 7 HOH C 2 602 806 HOH HOH . 
CB 7 HOH C 3 603 811 HOH HOH . 
CB 7 HOH C 4 604 805 HOH HOH . 
CB 7 HOH C 5 605 813 HOH HOH . 
CB 7 HOH C 6 606 802 HOH HOH . 
CB 7 HOH C 7 607 815 HOH HOH . 
CB 7 HOH C 8 608 812 HOH HOH . 
CB 7 HOH C 9 609 807 HOH HOH . 
CB 7 HOH C 10 610 804 HOH HOH . 
CB 7 HOH C 11 611 808 HOH HOH . 
CB 7 HOH C 12 612 803 HOH HOH . 
CB 7 HOH C 13 613 814 HOH HOH . 
CB 7 HOH C 14 614 801 HOH HOH . 
CB 7 HOH C 15 615 809 HOH HOH . 
DB 7 HOH D 1 601 806 HOH HOH . 
DB 7 HOH D 2 602 810 HOH HOH . 
DB 7 HOH D 3 603 811 HOH HOH . 
DB 7 HOH D 4 604 805 HOH HOH . 
DB 7 HOH D 5 605 807 HOH HOH . 
DB 7 HOH D 6 606 813 HOH HOH . 
DB 7 HOH D 7 607 802 HOH HOH . 
DB 7 HOH D 8 608 815 HOH HOH . 
DB 7 HOH D 9 609 812 HOH HOH . 
DB 7 HOH D 10 610 804 HOH HOH . 
DB 7 HOH D 11 611 808 HOH HOH . 
DB 7 HOH D 12 612 803 HOH HOH . 
DB 7 HOH D 13 613 814 HOH HOH . 
DB 7 HOH D 14 614 801 HOH HOH . 
DB 7 HOH D 15 615 809 HOH HOH . 
EB 7 HOH E 1 601 810 HOH HOH . 
EB 7 HOH E 2 602 806 HOH HOH . 
EB 7 HOH E 3 603 811 HOH HOH . 
EB 7 HOH E 4 604 805 HOH HOH . 
EB 7 HOH E 5 605 813 HOH HOH . 
EB 7 HOH E 6 606 807 HOH HOH . 
EB 7 HOH E 7 607 815 HOH HOH . 
EB 7 HOH E 8 608 812 HOH HOH . 
EB 7 HOH E 9 609 802 HOH HOH . 
EB 7 HOH E 10 610 804 HOH HOH . 
EB 7 HOH E 11 611 803 HOH HOH . 
EB 7 HOH E 12 612 808 HOH HOH . 
EB 7 HOH E 13 613 814 HOH HOH . 
EB 7 HOH E 14 614 801 HOH HOH . 
EB 7 HOH E 15 615 809 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . AA 2 138.223 98.163 66.152 1 103.59 ? C1 NAG 502 C 1 
HETATM 2 C C2 NAG . . . AA 2 136.785 97.873 65.725 1 103.59 ? C2 NAG 502 C 1 
HETATM 3 C C3 NAG . . . AA 2 136.77 96.983 64.484 1 103.59 ? C3 NAG 502 C 1 
HETATM 4 C C4 NAG . . . AA 2 137.623 97.593 63.381 1 103.59 ? C4 NAG 502 C 1 
HETATM 5 C C5 NAG . . . AA 2 139.025 97.889 63.904 1 103.59 ? C5 NAG 502 C 1 
HETATM 6 C C6 NAG . . . AA 2 139.896 98.602 62.895 1 103.59 ? C6 NAG 502 C 1 
HETATM 7 C C7 NAG . . . AA 2 135.229 97.937 67.624 1 103.59 ? C7 NAG 502 C 1 
HETATM 8 C C8 NAG . . . AA 2 134.536 97.135 68.684 1 103.59 ? C8 NAG 502 C 1 
HETATM 9 N N2 NAG . . . AA 2 136.036 97.253 66.807 1 103.59 ? N2 NAG 502 C 1 
HETATM 10 O O3 NAG . . . AA 2 135.431 96.824 64.032 1 103.59 ? O3 NAG 502 C 1 
HETATM 11 O O4 NAG . . . AA 2 137.712 96.693 62.282 1 103.59 ? O4 NAG 502 C 1 
HETATM 12 O O5 NAG . . . AA 2 138.944 98.741 65.056 1 103.59 ? O5 NAG 502 C 1 
HETATM 13 O O6 NAG . . . AA 2 141.264 98.572 63.277 1 103.59 ? O6 NAG 502 C 1 
HETATM 14 O O7 NAG . . . AA 2 135.066 99.148 67.512 1 103.59 ? O7 NAG 502 C 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           366 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#