data_8OQ6 # _model_server_result.job_id Ofc3WoyEOuKHW3W0GK7O5Q _model_server_result.datetime_utc '2024-11-29 16:56:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8oq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"SA","auth_seq_id":502}' # _entry.id 8OQ6 # _exptl.entry_id 8OQ6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8OQ6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8OQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 R N N ? 2 S N N ? 2 AA N N ? 2 BA N N ? 2 JA N N ? 2 KA N N ? 2 SA N N ? 2 TA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 198 A CYS 198 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 198 B CYS 198 1_555 B SG CYS 212 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 198 C CYS 198 1_555 C SG CYS 212 C CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 D SG CYS 198 D CYS 198 1_555 D SG CYS 212 D CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 E SG CYS 198 E CYS 198 1_555 E SG CYS 212 E CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 140 A ASN 140 1_555 F C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale2 A ND2 ASN 234 A ASN 234 1_555 G C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale3 B ND2 ASN 140 B ASN 140 1_555 R C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale4 B ND2 ASN 234 B ASN 234 1_555 S C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale5 C ND2 ASN 140 C ASN 140 1_555 AA C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale6 C ND2 ASN 234 C ASN 234 1_555 BA C1 NAG . C NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? covale ? covale7 D ND2 ASN 140 D ASN 140 1_555 JA C1 NAG . D NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale8 D ND2 ASN 234 D ASN 234 1_555 KA C1 NAG . D NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale9 E ND2 ASN 140 E ASN 140 1_555 SA C1 NAG . E NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale10 E ND2 ASN 234 E ASN 234 1_555 TA C1 NAG . E NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 332 n n C1 O1 NAG sing 333 n n C1 O5 NAG sing 334 n n C1 H1 NAG sing 335 n n C2 C3 NAG sing 336 n n C2 N2 NAG sing 337 n n C2 H2 NAG sing 338 n n C3 C4 NAG sing 339 n n C3 O3 NAG sing 340 n n C3 H3 NAG sing 341 n n C4 C5 NAG sing 342 n n C4 O4 NAG sing 343 n n C4 H4 NAG sing 344 n n C5 C6 NAG sing 345 n n C5 O5 NAG sing 346 n n C5 H5 NAG sing 347 n n C6 O6 NAG sing 348 n n C6 H61 NAG sing 349 n n C6 H62 NAG sing 350 n n C7 C8 NAG sing 351 n n C7 N2 NAG sing 352 n n C7 O7 NAG doub 353 n n C8 H81 NAG sing 354 n n C8 H82 NAG sing 355 n n C8 H83 NAG sing 356 n n N2 HN2 NAG sing 357 n n O1 HO1 NAG sing 358 n n O3 HO3 NAG sing 359 n n O4 HO4 NAG sing 360 n n O6 HO6 NAG sing 361 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8OQ6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NAG A 1 501 602 NAG NAG . G 2 NAG A 1 502 603 NAG NAG . H 3 OCT A 1 503 701 OCT OCT . I 4 D10 A 1 504 703 D10 D10 . J 4 D10 A 1 505 704 D10 D10 . K 5 7P9 A 1 506 705 7P9 PCW . L 5 7P9 A 1 507 706 7P9 PCW . M 3 OCT A 1 508 707 OCT OCT . N 4 D10 A 1 509 702 D10 D10 . O 6 CL A 1 510 1 CL CL . P 6 CL A 1 511 2 CL CL . Q 4 D10 B 1 501 702 D10 D10 . R 2 NAG B 1 502 602 NAG NAG . S 2 NAG B 1 503 603 NAG NAG . T 3 OCT B 1 504 701 OCT OCT . U 4 D10 B 1 505 703 D10 D10 . V 4 D10 B 1 506 704 D10 D10 . W 5 7P9 B 1 507 705 7P9 PCW . X 5 7P9 B 1 508 706 7P9 PCW . Y 3 OCT B 1 509 707 OCT OCT . Z 4 D10 C 1 501 702 D10 D10 . AA 2 NAG C 1 502 602 NAG NAG . BA 2 NAG C 1 503 603 NAG NAG . CA 3 OCT C 1 504 701 OCT OCT . DA 4 D10 C 1 505 703 D10 D10 . EA 4 D10 C 1 506 704 D10 D10 . FA 5 7P9 C 1 507 705 7P9 PCW . GA 5 7P9 C 1 508 706 7P9 PCW . HA 3 OCT C 1 509 707 OCT OCT . IA 4 D10 D 1 501 702 D10 D10 . JA 2 NAG D 1 502 602 NAG NAG . KA 2 NAG D 1 503 603 NAG NAG . LA 3 OCT D 1 504 701 OCT OCT . MA 4 D10 D 1 505 703 D10 D10 . NA 4 D10 D 1 506 704 D10 D10 . OA 5 7P9 D 1 507 705 7P9 PCW . PA 5 7P9 D 1 508 706 7P9 PCW . QA 3 OCT D 1 509 707 OCT OCT . RA 4 D10 E 1 501 702 D10 D10 . SA 2 NAG E 1 502 602 NAG NAG . TA 2 NAG E 1 503 603 NAG NAG . UA 3 OCT E 1 504 701 OCT OCT . VA 4 D10 E 1 505 703 D10 D10 . WA 4 D10 E 1 506 704 D10 D10 . XA 5 7P9 E 1 507 705 7P9 PCW . YA 5 7P9 E 1 508 706 7P9 PCW . ZA 3 OCT E 1 509 707 OCT OCT . AB 7 HOH A 1 601 810 HOH HOH . AB 7 HOH A 2 602 806 HOH HOH . AB 7 HOH A 3 603 811 HOH HOH . AB 7 HOH A 4 604 805 HOH HOH . AB 7 HOH A 5 605 813 HOH HOH . AB 7 HOH A 6 606 815 HOH HOH . AB 7 HOH A 7 607 812 HOH HOH . AB 7 HOH A 8 608 807 HOH HOH . AB 7 HOH A 9 609 802 HOH HOH . AB 7 HOH A 10 610 804 HOH HOH . AB 7 HOH A 11 611 808 HOH HOH . AB 7 HOH A 12 612 803 HOH HOH . AB 7 HOH A 13 613 814 HOH HOH . AB 7 HOH A 14 614 801 HOH HOH . AB 7 HOH A 15 615 809 HOH HOH . BB 7 HOH B 1 601 810 HOH HOH . BB 7 HOH B 2 602 806 HOH HOH . BB 7 HOH B 3 603 811 HOH HOH . BB 7 HOH B 4 604 805 HOH HOH . BB 7 HOH B 5 605 813 HOH HOH . BB 7 HOH B 6 606 807 HOH HOH . BB 7 HOH B 7 607 815 HOH HOH . BB 7 HOH B 8 608 812 HOH HOH . BB 7 HOH B 9 609 804 HOH HOH . BB 7 HOH B 10 610 802 HOH HOH . BB 7 HOH B 11 611 808 HOH HOH . BB 7 HOH B 12 612 803 HOH HOH . BB 7 HOH B 13 613 814 HOH HOH . BB 7 HOH B 14 614 801 HOH HOH . BB 7 HOH B 15 615 809 HOH HOH . CB 7 HOH C 1 601 810 HOH HOH . CB 7 HOH C 2 602 806 HOH HOH . CB 7 HOH C 3 603 811 HOH HOH . CB 7 HOH C 4 604 805 HOH HOH . CB 7 HOH C 5 605 813 HOH HOH . CB 7 HOH C 6 606 802 HOH HOH . CB 7 HOH C 7 607 815 HOH HOH . CB 7 HOH C 8 608 812 HOH HOH . CB 7 HOH C 9 609 807 HOH HOH . CB 7 HOH C 10 610 804 HOH HOH . CB 7 HOH C 11 611 808 HOH HOH . CB 7 HOH C 12 612 803 HOH HOH . CB 7 HOH C 13 613 814 HOH HOH . CB 7 HOH C 14 614 801 HOH HOH . CB 7 HOH C 15 615 809 HOH HOH . DB 7 HOH D 1 601 806 HOH HOH . DB 7 HOH D 2 602 810 HOH HOH . DB 7 HOH D 3 603 811 HOH HOH . DB 7 HOH D 4 604 805 HOH HOH . DB 7 HOH D 5 605 807 HOH HOH . DB 7 HOH D 6 606 813 HOH HOH . DB 7 HOH D 7 607 802 HOH HOH . DB 7 HOH D 8 608 815 HOH HOH . DB 7 HOH D 9 609 812 HOH HOH . DB 7 HOH D 10 610 804 HOH HOH . DB 7 HOH D 11 611 808 HOH HOH . DB 7 HOH D 12 612 803 HOH HOH . DB 7 HOH D 13 613 814 HOH HOH . DB 7 HOH D 14 614 801 HOH HOH . DB 7 HOH D 15 615 809 HOH HOH . EB 7 HOH E 1 601 810 HOH HOH . EB 7 HOH E 2 602 806 HOH HOH . EB 7 HOH E 3 603 811 HOH HOH . EB 7 HOH E 4 604 805 HOH HOH . EB 7 HOH E 5 605 813 HOH HOH . EB 7 HOH E 6 606 807 HOH HOH . EB 7 HOH E 7 607 815 HOH HOH . EB 7 HOH E 8 608 812 HOH HOH . EB 7 HOH E 9 609 802 HOH HOH . EB 7 HOH E 10 610 804 HOH HOH . EB 7 HOH E 11 611 803 HOH HOH . EB 7 HOH E 12 612 808 HOH HOH . EB 7 HOH E 13 613 814 HOH HOH . EB 7 HOH E 14 614 801 HOH HOH . EB 7 HOH E 15 615 809 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . SA 2 116.091 173.493 66.086 1 103.59 ? C1 NAG 502 E 1 HETATM 2 C C2 NAG . . . SA 2 117.072 174.582 65.654 1 103.59 ? C2 NAG 502 E 1 HETATM 3 C C3 NAG . . . SA 2 116.552 175.301 64.411 1 103.59 ? C3 NAG 502 E 1 HETATM 4 C C4 NAG . . . SA 2 116.231 174.299 63.312 1 103.59 ? C4 NAG 502 E 1 HETATM 5 C C5 NAG . . . SA 2 115.282 173.226 63.839 1 103.59 ? C5 NAG 502 E 1 HETATM 6 C C6 NAG . . . SA 2 115.008 172.131 62.834 1 103.59 ? C6 NAG 502 E 1 HETATM 7 C C7 NAG . . . SA 2 118.36 175.466 67.549 1 103.59 ? C7 NAG 502 E 1 HETATM 8 C C8 NAG . . . SA 2 118.439 176.527 68.605 1 103.59 ? C8 NAG 502 E 1 HETATM 9 N N2 NAG . . . SA 2 117.304 175.53 66.732 1 103.59 ? N2 NAG 502 E 1 HETATM 10 O O3 NAG . . . SA 2 117.532 176.226 63.955 1 103.59 ? O3 NAG 502 E 1 HETATM 11 O O4 NAG . . . SA 2 115.622 174.963 62.21 1 103.59 ? O4 NAG 502 E 1 HETATM 12 O O5 NAG . . . SA 2 115.855 172.595 64.993 1 103.59 ? O5 NAG 502 E 1 HETATM 13 O O6 NAG . . . SA 2 113.892 171.341 63.22 1 103.59 ? O6 NAG 502 E 1 HETATM 14 O O7 NAG . . . SA 2 119.214 174.59 67.44 1 103.59 ? O7 NAG 502 E 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 70 _model_server_stats.query_time_ms 477 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #